RchiOBHm_Chr7g0219141

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000194
Physical Location & Seq
Forward (+)
37394307 .. 37394678
372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19614

Sequence Viewer

Length: 372 bp
ATGTATAATTATGGGATTATATATATCGATTTTCTTGTGTGTAAAATTAGGGGCGTGACAGGTAAGGTGAATTGGTTGAGTTGGGAAAAGCTTGGATTGCCTAAGGAGGAGGGCGGTATGGGTTTCAGGTGTCTGCGAGATTTCAATTTAGCCCTCCTTGCCAAAGTAGGGTGGAGAATTATTCAACAACCTGAAGCTTTATGGGTTCAAGTGCTCAAGGGATTATATTTTCCTGATTGTGATTTCTTGTCAGCTTCTAAAGGCCCCAGAGCTTCGTGGGCTTGGAGTAGCATTCTGGAGGGAAGAAATTTATTAACTGATCATGCTTTGTGGCAAGTACTCAATAGGGAGTCCATTAGTACTTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

123

Amino Acids

14.19

Weight (kDa)

8.49

Isoelectric Point (pI)

21.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 307
AcuI CTGAAG 1 cut(s) 213
AfaI GTAC 2 cut(s) 339, 361
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 3 cut(s) 145, 185, 209
AluBI AGCT 4 cut(s) 91, 197, 254, 272
AluI AGCT 4 cut(s) 91, 197, 254, 272
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 102
Bbv12I GWGCWC 1 cut(s) 216
BclI TGATCA 1 cut(s) 319
BmcAI AGTACT 2 cut(s) 339, 361
BmgT120I GGNCC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 200
Bsa29I ATCGAT 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse21I CCTNAGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 27
BsiHKAI GWGCWC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 168
BsmI GAATGC 1 cut(s) 291
BsnI GGCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 264
BspDI ATCGAT 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 265
BssMI GATC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 102
BstKTI GATC 1 cut(s) 322
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 3 cut(s) 97, 158, 278
Bsu15I ATCGAT 1 cut(s) 27
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 263
ClaI ATCGAT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 338, 360
CviAII CATG 1 cut(s) 323
CviJI RGCY 7 cut(s) 91, 152, 197, 254, 264, 272, 281
CviKI_1 RGCY 7 cut(s) 91, 152, 197, 254, 264, 272, 281
CviQI GTAC 2 cut(s) 338, 360
DdeI CTNAG 1 cut(s) 102
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 213
Eco81I CCTNAGG 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 263
FaeI CATG 1 cut(s) 326
FaiI YATR 9 cut(s) 6, 12, 20, 22, 24, 119, 202, 226, 324
FatI CATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 319
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 264
Hin1II CATG 1 cut(s) 326
HindIII AAGCTT 2 cut(s) 89, 195
HinfI GANTC 1 cut(s) 350
HphI GGTGA 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 233, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 158, 278
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 1 cut(s) 326
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 45, 112, 204, 246, 280, 281
MaeIII GTNAC 1 cut(s) 55
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 1 cut(s) 315
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 7, 45, 70, 145, 177, 307
MlyI GAGTC 1 cut(s) 359
MnlI CCTC 4 cut(s) 100, 103, 164, 292
MseI TTAA 1 cut(s) 314
Mva1269I GAATGC 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 97, 158, 278
NdeII GATC 1 cut(s) 319
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 265
NmuCI GTSAC 1 cut(s) 55
PctI GAATGC 1 cut(s) 291
PleI GAGTC 1 cut(s) 358
PpsI GAGTC 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 1 cut(s) 263
RsaI GTAC 2 cut(s) 339, 361
RsaNI GTAC 2 cut(s) 338, 360
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 263
ScaI AGTACT 2 cut(s) 339, 361
SchI GAGTC 1 cut(s) 359
SduI GDGCHC 1 cut(s) 216
SetI ASST 8 cut(s) 64, 69, 93, 131, 193, 199, 256, 274
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 6 cut(s) 7, 45, 70, 145, 177, 307
SsiI CCGC 1 cut(s) 114
TaqI TCGA 1 cut(s) 27
TasI AATT 6 cut(s) 7, 45, 70, 145, 177, 307
TatI WGTACW 2 cut(s) 337, 359
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
XapI RAATTY 1 cut(s) 307
ZrmI AGTACT 2 cut(s) 339, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.