Rh7DG149500

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000194
Physical Location & Seq
Forward (+)
12883918 .. 12884277
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG149500.1

Sequence Viewer

Length: 360 bp
ATGAGTGAAGATCAGAAGGGTGAGATTATTCGGATGTTGGGGGTGCCAATTGTGATGTTCCATGAAAGATATTTAGGACTACCTACAATAGCAGGAAAAAATAAGAAGGAAATGTTTAAGAAGATTAATGAAAGATTGGAGTCTCACTTGCAAGGATGGCAATCAATGCTCTTGTCTAAAGCAGGGAAGACAGTTCTTATTAAAGCTATGGGGCAGGCAATCCCTTCCCTTCCTACTCTATGTCAGTCTTTCGACTCCCTAAAGGAGTTTATCGTTCTTATCAAAGCAAAGTGGCCAAGTACTGGTGGGGAAAAGGAGGAAACAAGAGGGGAATACATTGGTGTACCGCGGAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

119

Amino Acids

13.43

Weight (kDa)

9.59

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 349
AciI CCGC 2 cut(s) 347, 349
AcoI YGGCCR 1 cut(s) 293
AfaI GTAC 2 cut(s) 301, 345
AfiI CCNNNNNNNGG 1 cut(s) 302
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 147
AoxI GGCC 1 cut(s) 293
AseI ATTAAT 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 32
AvaII GGWCC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 295
BanI GGYRCC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 194
BccI CCATC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 358
BmcAI AGTACT 1 cut(s) 301
Bme18I GGWCC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 45
BpiI GAAGAC 1 cut(s) 194
BsaBI GATNNNNATC 1 cut(s) 160
BsaJI CCNNGG 1 cut(s) 347
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 39, 161
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 147
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 2 cut(s) 347, 349
BspANI GGCC 1 cut(s) 295
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 1 cut(s) 10
Bst4CI ACNGT 1 cut(s) 193
BstAPI GCANNNNNTGC 1 cut(s) 166
BstC8I GCNNGC 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 39, 161
BstFNI CGCG 1 cut(s) 349
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 2 cut(s) 157, 166
BstUI CGCG 1 cut(s) 349
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 347
BtsCI GGATG 2 cut(s) 39, 161
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 354
Cfr42I CCGCGG 1 cut(s) 350
Csp6I GTAC 2 cut(s) 300, 344
CviAII CATG 1 cut(s) 62
CviJI RGCY 2 cut(s) 206, 295
CviKI_1 RGCY 2 cut(s) 206, 295
CviQI GTAC 2 cut(s) 300, 344
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 293
Eco47I GGWCC 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 354
FaeI CATG 1 cut(s) 65
FaiI YATR 3 cut(s) 63, 209, 241
FatI CATG 1 cut(s) 61
FokI GGATG 2 cut(s) 46, 168
FspBI CTAG 1 cut(s) 358
HaeIII GGCC 1 cut(s) 295
Hin1II CATG 1 cut(s) 65
HinfI GANTC 2 cut(s) 140, 254
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 344
Hpy188I TCNGA 2 cut(s) 15, 33
Hpy8I GTNNAC 1 cut(s) 344
HpyAV CCTTC 4 cut(s) 10, 100, 234, 239
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 166
Hsp92II CATG 1 cut(s) 65
KspI CCGCGG 1 cut(s) 350
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 78, 168, 200, 288
MaeI CTAG 1 cut(s) 358
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 20, 133, 199
MfeI CAATTG 1 cut(s) 48
MlsI TGGCCA 1 cut(s) 295
MluCI AATT 1 cut(s) 48
MluNI TGGCCA 1 cut(s) 295
MlyI GAGTC 2 cut(s) 149, 248
MnlI CCTC 3 cut(s) 310, 320, 345
Mox20I TGGCCA 1 cut(s) 295
MscI TGGCCA 1 cut(s) 295
MseI TTAA 3 cut(s) 117, 126, 201
Msp20I TGGCCA 1 cut(s) 295
MspA1I CMGCKG 1 cut(s) 349
MunI CAATTG 1 cut(s) 48
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 157, 166
NdeII GATC 1 cut(s) 10
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 302
PleI GAGTC 2 cut(s) 148, 248
PpsI GAGTC 2 cut(s) 148, 248
PpuMI RGGWCCY 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 126
Psp5II RGGWCCY 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 354
PspPPI RGGWCCY 1 cut(s) 354
RsaI GTAC 2 cut(s) 301, 345
RsaNI GTAC 2 cut(s) 300, 344
SacII CCGCGG 1 cut(s) 350
SaqAI TTAA 3 cut(s) 117, 126, 201
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 354
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 2 cut(s) 149, 248
SetI ASST 3 cut(s) 85, 208, 356
Sfr303I CCGCGG 1 cut(s) 350
SgrBI CCGCGG 1 cut(s) 350
SinI GGWCC 1 cut(s) 354
Sse9I AATT 1 cut(s) 48
SsiI CCGC 2 cut(s) 347, 349
SspMI CTAG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 252
TasI AATT 1 cut(s) 48
TatI WGTACW 1 cut(s) 299
Tru1I TTAA 3 cut(s) 117, 126, 201
Tru9I TTAA 3 cut(s) 117, 126, 201
TspDTI ATGAA 2 cut(s) 78, 144
Van91I CCANNNNNTGG 1 cut(s) 302
VpaK11BI GGWCC 1 cut(s) 354
VspI ATTAAT 1 cut(s) 126
XspI CTAG 1 cut(s) 358
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.