Rmu_co8303311.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8303311.1
OG0000194
Physical Location & Seq
Forward (+)
91 .. 900
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8303311.1_g000001.1.cds

Sequence Viewer

Length: 810 bp
atgatgcatatcattgatgtgtattgtgttgcctcgggtcagcttgtgaatcataataagtctactctatactgtacacccaacatgactgatgcagatgttcttgatctttccgggattcttggtgtcccagcaactatcaatcctgggagatatcttggtctccctattatttggggtagatcgaaaatagcttccctctcctttatcaaagctaagttggctgacaagatccagaattggaaactttgcactttgtcatttgctgggagggaaactcttattaaatcagtggcccaagctgttcccaccttccccatgcattgttttaagtttccagtcactatttgcaaggagcttgatgctatgttggctaatttttggtggggtcagaagaaggatgagaacaaaatccattggaggagctgggattttcttggccagtctaaagaaaggggtggcttgggctttagaaatctcagtgagttcaatacctcgctcctagctaagcaagtttggagacttcactccgatcctacttctttttgtgctcagattctaaaaggtatttattatccacactccgatatcctaaatgctggaaagggttcacgcgcatcatgggcgtggagtagcctcttagatggtaaaagtttaattgttgatggggcacgatggcaggttgggaatggggagatgattaatatatgggctgacaagtggatttcttcgtccacccatggtttcttgcagcctctacttcctgtgaatagctctagaccacatttggtgaaggacctaattgattgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

270

Amino Acids

30.33

Weight (kDa)

9.2

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 62
AccII CGCG 1 cut(s) 615
AclWI GGATC 2 cut(s) 226, 527
AcoI YGGCCR 1 cut(s) 439
AfaI GTAC 1 cut(s) 76
AgsI TTSAA 1 cut(s) 490
AjnI CCWGG 1 cut(s) 145
AluBI AGCT 8 cut(s) 43, 194, 215, 302, 358, 426, 506, 774
AluI AGCT 8 cut(s) 43, 194, 215, 302, 358, 426, 506, 774
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 2 cut(s) 167, 514
AlwI GGATC 2 cut(s) 226, 527
Ama87I CYCGRG 1 cut(s) 34
AoxI GGCC 2 cut(s) 294, 439
ApeKI GCWGC 1 cut(s) 751
AseI ATTAAT 1 cut(s) 702
Asp700I GAANNNNTTC 1 cut(s) 607
AspLEI GCGC 1 cut(s) 617
AspS9I GGNCC 2 cut(s) 295, 796
AsuC2I CCSGG 1 cut(s) 115
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 34
AvaII GGWCC 1 cut(s) 796
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 763
BccI CCATC 3 cut(s) 638, 659, 669
BciT130I CCWGG 1 cut(s) 147
BcnI CCSGG 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 167, 514
BfaI CTAG 2 cut(s) 503, 777
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 1 cut(s) 752
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 1 cut(s) 753
Bme1390I CCNGG 2 cut(s) 115, 147
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 34
BmgT120I GGNCC 2 cut(s) 295, 796
BmrFI CCNGG 2 cut(s) 115, 147
BmsI GCATC 3 cut(s) 82, 352, 626
BplI GAGNNNNNCTC 2 cut(s) 262, 294
Bpu1102I GCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 115
BsaBI GATNNNNATC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 167
BsaJI CCNNGG 3 cut(s) 33, 146, 739
Bse1I ACTGG 2 cut(s) 338, 442
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 3 cut(s) 33, 146, 739
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 8
BseMII CTCAG 2 cut(s) 493, 566
BseNI ACTGG 2 cut(s) 338, 442
BseRI GAGGAG 1 cut(s) 436
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 1 cut(s) 763
BseYI CCCAGC 3 cut(s) 130, 266, 426
Bsh1236I CGCG 1 cut(s) 615
BshFI GGCC 2 cut(s) 296, 441
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 167, 514
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 296, 441
Bso31I GGTCTC 1 cut(s) 167
BsoBI CYCGRG 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 553, 673
Bsp1407I TGTACA 1 cut(s) 74
Bsp143I GATC 4 cut(s) 106, 182, 231, 532
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 739
BspANI GGCC 2 cut(s) 296, 441
BspCNI CTCAG 2 cut(s) 492, 565
BspFNI CGCG 1 cut(s) 615
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 2 cut(s) 226, 527
BspTNI GGTCTC 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 74
BsrI ACTGG 2 cut(s) 338, 442
BssECI CCNNGG 3 cut(s) 33, 146, 739
BssMI GATC 4 cut(s) 106, 182, 231, 532
BssT1I CCWWGG 1 cut(s) 739
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 74
BstDEI CTNAG 5 cut(s) 216, 479, 507, 552, 640
BstDSI CCRYGG 1 cut(s) 739
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 1 cut(s) 615
BstHHI GCGC 1 cut(s) 617
BstKTI GATC 4 cut(s) 109, 185, 234, 535
BstMAI GTCTC 2 cut(s) 167, 514
BstMBI GATC 4 cut(s) 106, 182, 231, 532
BstMWI GCNNNNNNNGC 3 cut(s) 221, 371, 623
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 2 cut(s) 113, 145
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 1 cut(s) 615
BstV1I GCAGC 1 cut(s) 763
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
BsuRI GGCC 2 cut(s) 296, 441
BtgI CCRYGG 1 cut(s) 739
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 2 cut(s) 297, 487
BveI ACCTGC 1 cut(s) 670
CfoI GCGC 1 cut(s) 617
Cfr13I GGNCC 2 cut(s) 295, 796
Csp6I GTAC 1 cut(s) 75
CviAII CATG 4 cut(s) 85, 319, 621, 740
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 5 cut(s) 216, 479, 507, 552, 640
DpnI GATC 4 cut(s) 108, 184, 233, 534
DpnII GATC 4 cut(s) 106, 182, 231, 532
EaeI YGGCCR 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 739
Eco31I GGTCTC 1 cut(s) 167
Eco32I GATATC 2 cut(s) 155, 589
Eco47I GGWCC 1 cut(s) 796
Eco88I CYCGRG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 796
EcoRII CCWGG 1 cut(s) 145
EcoRV GATATC 2 cut(s) 155, 589
EcoT14I CCWWGG 1 cut(s) 739
EcoT22I ATGCAT 2 cut(s) 9, 324
ErhI CCWWGG 1 cut(s) 739
FaeI CATG 4 cut(s) 88, 322, 624, 743
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 84, 318, 620, 739
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 1 cut(s) 752
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 1 cut(s) 752
FspBI CTAG 2 cut(s) 503, 777
GlaI GCGC 1 cut(s) 616
GluI GCNGC 1 cut(s) 752
GsaI CCCAGC 3 cut(s) 134, 270, 430
HaeIII GGCC 2 cut(s) 296, 441
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 617
Hin1II CATG 4 cut(s) 88, 322, 624, 743
Hin6I GCGC 1 cut(s) 615
HinP1I GCGC 1 cut(s) 615
HinfI GANTC 3 cut(s) 49, 118, 556
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 4 cut(s) 63, 77, 611, 735
Hpy188I TCNGA 4 cut(s) 393, 532, 555, 586
Hpy188III TCNNGA 3 cut(s) 104, 235, 777
Hpy8I GTNNAC 4 cut(s) 63, 77, 611, 735
HpyAV CCTTC 3 cut(s) 322, 391, 787
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4V TGCA 6 cut(s) 7, 95, 252, 322, 351, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 371, 623
HpyF3I CTNAG 5 cut(s) 216, 479, 507, 552, 640
Hsp92II CATG 4 cut(s) 88, 322, 624, 743
HspAI GCGC 1 cut(s) 615
Kzo9I GATC 4 cut(s) 106, 182, 231, 532
LmnI GCTCC 3 cut(s) 355, 423, 504
Lsp1109I GCAGC 1 cut(s) 763
LweI GCATC 3 cut(s) 82, 352, 626
MaeI CTAG 2 cut(s) 503, 777
MaeIII GTNAC 1 cut(s) 340
MalI GATC 4 cut(s) 108, 184, 233, 534
MboI GATC 4 cut(s) 106, 182, 231, 532
MboII GAAGA 2 cut(s) 406, 720
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 553, 673
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 4 cut(s) 238, 376, 657, 801
MluNI TGGCCA 1 cut(s) 441
MnlI CCTC 7 cut(s) 43, 209, 264, 414, 505, 647, 765
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 2 cut(s) 9, 324
MroXI GAANNNNTTC 1 cut(s) 607
MscI TGGCCA 1 cut(s) 441
MseI TTAA 4 cut(s) 285, 330, 656, 702
MslI CAYNNNNRTG 2 cut(s) 17, 625
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 115, 147
MvaI CCWGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 615
MwoI GCNNNNNNNGC 3 cut(s) 221, 371, 623
NciI CCSGG 1 cut(s) 115
NcoI CCATGG 1 cut(s) 739
NdeII GATC 4 cut(s) 106, 182, 231, 532
NlaIII CATG 4 cut(s) 88, 322, 624, 743
NmuCI GTSAC 1 cut(s) 340
NsiI ATGCAT 2 cut(s) 9, 324
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 49, 118, 556
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 1 cut(s) 753
PpuMI RGGWCCY 1 cut(s) 796
PshBI ATTAAT 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 1 cut(s) 145
PspFI CCCAGC 3 cut(s) 130, 266, 426
PspGI CCWGG 1 cut(s) 145
PspPI GGNCC 2 cut(s) 295, 796
PspPPI RGGWCCY 1 cut(s) 796
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
RseI CAYNNNNRTG 2 cut(s) 17, 625
SaqAI TTAA 4 cut(s) 285, 330, 656, 702
SatI GCNGC 1 cut(s) 752
Sau3AI GATC 4 cut(s) 106, 182, 231, 532
Sau96I GGNCC 2 cut(s) 295, 796
ScrFI CCNGG 2 cut(s) 115, 147
SduI GDGCHC 2 cut(s) 553, 673
SfaNI GCATC 3 cut(s) 82, 352, 626
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 2 cut(s) 17, 625
Sse9I AATT 4 cut(s) 238, 376, 657, 801
SspMI CTAG 2 cut(s) 503, 777
StyD4I CCNGG 2 cut(s) 113, 145
StyI CCWWGG 1 cut(s) 739
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 185
TasI AATT 4 cut(s) 238, 376, 657, 801
TatI WGTACW 1 cut(s) 74
TfiI GAWTC 3 cut(s) 49, 118, 556
Tru1I TTAA 4 cut(s) 285, 330, 656, 702
Tru9I TTAA 4 cut(s) 285, 330, 656, 702
TscAI CASTG 2 cut(s) 297, 487
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 1 cut(s) 340
TspRI CASTG 2 cut(s) 297, 487
VpaK11BI GGWCC 1 cut(s) 796
VspI ATTAAT 1 cut(s) 702
XbaI TCTAGA 1 cut(s) 776
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 2 cut(s) 503, 777
Zsp2I ATGCAT 2 cut(s) 9, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.