Rmu_co8140276.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8140276.1
OG0000194
Physical Location & Seq
Forward (+)
90 .. 638
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8140276.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
atgaaggctaccacgacaaactgtcaatctttgtgtacaatcattgatgcttattgtgtagcctcggggcagtcggtcaactatgacaaatcctcaattttcttctcagctaatactccttcagaaatgcaagatgatattgctgcggtgcttaacatacctatttcgaaggaacctggcatttaccttggtctgccaacccactggggaaattccaaaaagaaggcttcggcctatatcagggatagaattaagaagaagttgaatggatggaaagcagacgtattatcccaagctggcacagaagttttaatagaagcagtggcaatggcagtcccaacctacccgatgtctattttcttgatgcctagcactctttgtaaggcgataaactctgatattgctaacttttggtggggatcaaatgaaaataaagggaaaatccactggaaagcatgggattctatctgtaaaagcaaggtggatggtggtctaggcttcaaggagctggtgacgtataataaaactttcttggcgaagcaatgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

182

Amino Acids

20.06

Weight (kDa)

8.97

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 146
AclWI GGATC 1 cut(s) 427
AcsI RAATTY 1 cut(s) 211
AcuI CTGAAG 1 cut(s) 105
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 265, 502
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 3 cut(s) 110, 296, 508
AluI AGCT 3 cut(s) 110, 296, 508
AlwI GGATC 1 cut(s) 427
Ama87I CYCGRG 1 cut(s) 64
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 523
AsuII TTCGAA 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 64
BbvI GCAGC 1 cut(s) 130
BccI CCATC 2 cut(s) 264, 479
BciT130I CCWGG 1 cut(s) 177
BfaI CTAG 3 cut(s) 369, 494, 547
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 177
BmeRI GACNNNNNGTC 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 37, 354
BmuI ACTGGG 1 cut(s) 214
Bpu14I TTCGAA 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 63, 187
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 2 cut(s) 209, 452
Bse3DI GCAATG 2 cut(s) 333, 548
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 63, 187
BseGI GGATG 2 cut(s) 275, 490
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 2 cut(s) 333, 548
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 2 cut(s) 209, 452
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 320
BsnI GGCC 1 cut(s) 233
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 167
Bsp1407I TGTACA 1 cut(s) 35
Bsp143I GATC 1 cut(s) 419
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 174
BspPI GGATC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 167
BsrDI GCAATG 2 cut(s) 333, 548
BsrGI TGTACA 1 cut(s) 35
BsrI ACTGG 2 cut(s) 209, 452
BssECI CCNNGG 2 cut(s) 63, 187
BssMI GATC 1 cut(s) 419
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 35
BstBI TTCGAA 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 1 cut(s) 106
BstENI CCTNNNNNAGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 275, 490
BstKTI GATC 1 cut(s) 422
BstMBI GATC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 130
BstXI CCANNNNNNTGG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 275, 490
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 3 cut(s) 202, 327, 445
Cac8I GCNNGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 36
CviAII CATG 1 cut(s) 456
CviJI RGCY 8 cut(s) 8, 62, 110, 227, 233, 296, 498, 508
CviKI_1 RGCY 8 cut(s) 8, 62, 110, 227, 233, 296, 498, 508
CviQI GTAC 1 cut(s) 36
DdeI CTNAG 1 cut(s) 106
DpnI GATC 1 cut(s) 421
DpnII GATC 1 cut(s) 419
DriI GACNNNNNGTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 64
EcoNI CCTNNNNNAGG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 459
FaiI YATR 5 cut(s) 84, 158, 237, 457, 519
FaqI GGGAC 1 cut(s) 320
FatI CATG 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 2 cut(s) 282, 497
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 3 cut(s) 369, 494, 547
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 233
Hin1II CATG 1 cut(s) 459
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 1 cut(s) 461
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 2 cut(s) 36, 79
Hpy188I TCNGA 2 cut(s) 124, 397
Hpy188III TCNNGA 1 cut(s) 361
Hpy8I GTNNAC 2 cut(s) 36, 79
HpyAV CCTTC 3 cut(s) 129, 163, 217
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 2 cut(s) 282, 515
HpyCH4V TGCA 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 106
HpySE526I ACGT 2 cut(s) 282, 515
Hsp92II CATG 1 cut(s) 459
Kzo9I GATC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 505
LpnPI CCDG 7 cut(s) 162, 189, 190, 226, 282, 433, 494
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 2 cut(s) 37, 354
MaeI CTAG 3 cut(s) 369, 494, 547
MaeII ACGT 2 cut(s) 282, 515
MaeIII GTNAC 1 cut(s) 511
MalI GATC 1 cut(s) 421
MboI GATC 1 cut(s) 419
MboII GAAGA 2 cut(s) 94, 268
MluCI AATT 3 cut(s) 96, 211, 249
MnlI CCTC 2 cut(s) 73, 103
MseI TTAA 3 cut(s) 153, 252, 311
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
NdeII GATC 1 cut(s) 419
NlaIII CATG 1 cut(s) 459
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 1 cut(s) 511
NspV TTCGAA 1 cut(s) 167
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 174
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 153, 252, 311
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 419
ScrFI CCNGG 1 cut(s) 177
SfaNI GCATC 2 cut(s) 37, 354
SfuI TTCGAA 1 cut(s) 167
Sse9I AATT 3 cut(s) 96, 211, 249
SsiI CCGC 1 cut(s) 146
SspMI CTAG 3 cut(s) 369, 494, 547
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 2 cut(s) 285, 518
TaqI TCGA 1 cut(s) 167
TaqII GACCGA 1 cut(s) 64
TasI AATT 3 cut(s) 96, 211, 249
TatI WGTACW 1 cut(s) 35
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 153, 252, 311
Tru9I TTAA 3 cut(s) 153, 252, 311
TscAI CASTG 3 cut(s) 209, 327, 452
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 2 cut(s) 17, 441
TspRI CASTG 3 cut(s) 209, 327, 452
XagI CCTNNNNNAGG 1 cut(s) 238
XapI RAATTY 1 cut(s) 211
XspI CTAG 3 cut(s) 369, 494, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.