Rorug03G0104900

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000194
Physical Location & Seq
Forward (+)
8306579 .. 8307433
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0104900.1

Sequence Viewer

Length: 543 bp
ATGTCCTTTTCTGTGCCTATGCCTTCGGCTGGACCAAGCCCTACACCCCTTTCGAACCCTATAACTGTGGTTAGCTCACAGTTCCTGGCATCCTACCCCGTGGATCTGTACATTTCTGAGAAGCTGATCACCATTAAGGAAGGTGCCTTCGCTGTCACCAATGTTGATGGCGAAGTCATGTTCACTATTATTTCGATACATAGGAGATGGAAAGTATATAGAGGAGATAGCTCGAGCAGAAAAGATCTACTTTTCAGTGCCAAGAAGTCAGGGCTAGTCCAATTTAAGACTGAACTAGATGTGTTCTTGGCTACTAACACAAAGGAAGACCAGCATGATTTCAAGGTCAAGGGAAGCTTTAGGGATAAAGCATGTGTTAATGATATAGGAGTGAAGTGTAATTCCAATCCTAATATTGAAGTGGAACACAACAACAATCCTATCATAAGCCAACAAGCAACACCTGCCATCAAGTGTGCTCACAACATTATCAAGACACAGTCTCAAGACACAGTCTGGGCTACAAAGCAGAATTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

180

Amino Acids

19.93

Weight (kDa)

8.4

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOR PF04525 65 - 126 1.2e-11 LURP-one-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 143
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 532
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 343, 419
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 4 cut(s) 75, 124, 231, 357
AluI AGCT 4 cut(s) 75, 124, 231, 357
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 507
AlwI GGATC 1 cut(s) 111
AlwNI CAGNNNCTG 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 232
ApoI RAATTY 1 cut(s) 532
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 2 cut(s) 121, 148
AsuII TTCGAA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 232
AvaII GGWCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 143
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 481
BccI CCATC 3 cut(s) 161, 201, 476
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 507
BfaI CTAG 2 cut(s) 275, 296
BfuAI ACCTGC 1 cut(s) 472
BglII AGATCT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 98
BpiI GAAGAC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 489
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 29
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 2 cut(s) 108, 528
BseRI GAGGAG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 232
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 232
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 103, 126, 244
BspCNI CTCAG 2 cut(s) 109, 529
BspLI GGNNCC 1 cut(s) 145
BspMI ACCTGC 1 cut(s) 472
BspPI GGATC 1 cut(s) 111
BspT104I TTCGAA 1 cut(s) 53
BspT107I GGYRCC 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 3 cut(s) 103, 126, 244
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 4 cut(s) 67, 81, 501, 514
BstAPI GCANNNNNTGC 1 cut(s) 464
BstAUI TGTACA 1 cut(s) 108
BstBI TTCGAA 1 cut(s) 53
BstDEI CTNAG 2 cut(s) 117, 537
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 89
BstKTI GATC 3 cut(s) 106, 129, 247
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 3 cut(s) 103, 126, 244
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 84
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 103, 244
BstYI RGATCY 2 cut(s) 103, 244
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 89
BtsIMutI CAGTG 1 cut(s) 262
BveI ACCTGC 1 cut(s) 472
CaiI CAGNNNCTG 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 109
CviAII CATG 3 cut(s) 178, 335, 372
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 117, 537
DpnI GATC 3 cut(s) 105, 128, 246
DpnII GATC 3 cut(s) 103, 126, 244
Eco47I GGWCC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 3 cut(s) 181, 338, 375
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 341, 373
FatI CATG 3 cut(s) 177, 334, 371
FbaI TGATCA 1 cut(s) 126
FokI GGATG 1 cut(s) 76
FspBI CTAG 2 cut(s) 275, 296
Hin1II CATG 3 cut(s) 181, 338, 375
HindIII AAGCTT 1 cut(s) 355
HphI GGTGA 2 cut(s) 121, 148
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 118, 538
Hpy188III TCNNGA 2 cut(s) 493, 506
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 3 cut(s) 33, 134, 157
HpyCH4III ACNGT 4 cut(s) 67, 81, 501, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 117, 537
Hsp92II CATG 3 cut(s) 181, 338, 375
Ksp22I TGATCA 1 cut(s) 126
Kzo9I GATC 3 cut(s) 103, 126, 244
LpnPI CCDG 7 cut(s) 15, 71, 98, 255, 344, 477, 502
LweI GCATC 1 cut(s) 98
MaeI CTAG 2 cut(s) 275, 296
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 105, 128, 246
MboI GATC 3 cut(s) 103, 126, 244
MboII GAAGA 1 cut(s) 338
MflI RGATCY 2 cut(s) 103, 244
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 3 cut(s) 281, 400, 532
MnlI CCTC 1 cut(s) 215
MseI TTAA 3 cut(s) 135, 285, 378
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 464
NdeII GATC 3 cut(s) 103, 126, 244
NlaIII CATG 3 cut(s) 181, 338, 375
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 375
NspV TTCGAA 1 cut(s) 53
PaeR7I CTCGAG 1 cut(s) 232
PaqCI CACCTGC 1 cut(s) 472
PflFI GACNNNGTC 2 cut(s) 499, 512
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 32
PspXI VCTCGAGB 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 103, 244
PsyI GACNNNGTC 2 cut(s) 499, 512
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 3 cut(s) 135, 285, 378
Sau3AI GATC 3 cut(s) 103, 126, 244
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 481
SetI ASST 7 cut(s) 77, 126, 145, 233, 348, 359, 466
SfaNI GCATC 1 cut(s) 98
Sfr274I CTCGAG 1 cut(s) 232
SfuI TTCGAA 1 cut(s) 53
SinI GGWCC 1 cut(s) 32
SlaI CTCGAG 1 cut(s) 232
SmlI CTYRAG 2 cut(s) 232, 504
SmoI CTYRAG 2 cut(s) 232, 504
Sse9I AATT 3 cut(s) 281, 400, 532
SspI AATATT 1 cut(s) 415
SspMI CTAG 2 cut(s) 275, 296
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 4 cut(s) 67, 81, 501, 514
TaqI TCGA 3 cut(s) 53, 194, 233
TasI AATT 3 cut(s) 281, 400, 532
TatI WGTACW 1 cut(s) 108
Tru1I TTAA 3 cut(s) 135, 285, 378
Tru9I TTAA 3 cut(s) 135, 285, 378
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 154
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 2 cut(s) 499, 512
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 532
XceI RCATGY 1 cut(s) 375
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 2 cut(s) 275, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.