Rmu_co8282095.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8282095.1
OG0000194
Physical Location & Seq
Forward (+)
193 .. 849
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8282095.1_g000001.1.cds

Sequence Viewer

Length: 657 bp
atggctggtagagaaattctgattaaatcagtggctatggcaatccctgcttatcctatggcttgttttaagtttcctaaagtgatatgtgatgagatcaattctgcacttggaaatttctggtggggctctagtcaaacggggaacaaactgcattggaaaagttggaattatcttggactacctaaatctgatggtgggattggtttccgggacctacagcattttaatcttgccctcctatccaagcaatgctggtgccttataaatgaacctgagtctttatgggctagggttctaaaagccaggtactatccgaactgcagttttcttgaggctagcaagggttaccgagcctcttggagttggtctagtttactagaggctagagacactatgatcaagggtactagttggcaagtcatctctggctcttccattaacatatggaaggataattggctccctctccccattatggagttatcaaaactactaggattacacatgttgctgcccctgtttttttttggtctctcattgactgggatacccactcttgggttctggatagcattatacatctcattcagccttctgagatcattaaagtcctctcgattcctattggagatggggagggccatgatcgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

218

Amino Acids

24.8

Weight (kDa)

9.46

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 15, 115
AfaI GTAC 2 cut(s) 311, 409
AfiI CCNNNNNNNGG 3 cut(s) 478, 560, 561
AflIII ACRYGT 1 cut(s) 507
AhlI ACTAGT 1 cut(s) 410
AjnI CCWGG 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 384, 539
AoxI GGCC 1 cut(s) 642
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 2 cut(s) 15, 115
AspS9I GGNCC 2 cut(s) 214, 642
AsuC2I CCSGG 1 cut(s) 212
AsuNHI GCTAGC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 214
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 501
BccI CCATC 2 cut(s) 188, 628
BciT130I CCWGG 1 cut(s) 307
BciVI GTATCC 1 cut(s) 543
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 384, 539
BcuI ACTAGT 1 cut(s) 410
BfaI CTAG 8 cut(s) 132, 291, 339, 372, 380, 387, 411, 497
BfmI CTRYAG 2 cut(s) 218, 322
BfuI GTATCC 1 cut(s) 543
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme1390I CCNGG 2 cut(s) 212, 307
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 214, 642
BmiI GGNNCC 3 cut(s) 215, 260, 464
BmrFI CCNGG 2 cut(s) 212, 307
BmrI ACTGGG 1 cut(s) 555
BmtI GCTAGC 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 353
BpuMI CCSGG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 539
Bsc4I CCNNNNNNNGG 3 cut(s) 478, 560, 561
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 257
BseBI CCWGG 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 478, 560, 561
BseMI GCAATG 1 cut(s) 257
BseMII CTCAG 2 cut(s) 267, 590
BseNI ACTGG 1 cut(s) 550
BseXI GCAGC 1 cut(s) 501
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 644
BshNI GGYRCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 3 cut(s) 478, 560, 561
BsmAI GTCTC 2 cut(s) 384, 539
BsmFI GGGAC 1 cut(s) 227
BsnI GGCC 1 cut(s) 644
Bso31I GGTCTC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 131
Bsp143I GATC 4 cut(s) 96, 399, 602, 648
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 2 cut(s) 268, 591
BspLI GGNNCC 3 cut(s) 215, 260, 464
BspMAI CTGCAG 1 cut(s) 326
BspOI GCTAGC 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 257
BsrI ACTGG 1 cut(s) 550
BssMI GATC 4 cut(s) 96, 399, 602, 648
Bst2UI CCWGG 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 439
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 2 cut(s) 276, 599
BstEII GGTNACC 1 cut(s) 347
BstKTI GATC 4 cut(s) 99, 402, 605, 651
BstMAI GTCTC 2 cut(s) 384, 539
BstMBI GATC 4 cut(s) 96, 399, 602, 648
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 511
BstPI GGTNACC 1 cut(s) 347
BstSCI CCNGG 2 cut(s) 210, 305
BstSFI CTRYAG 2 cut(s) 218, 322
BstV1I GCAGC 1 cut(s) 501
BsuI GTATCC 1 cut(s) 543
BsuRI GGCC 1 cut(s) 644
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 214, 642
Csp6I GTAC 2 cut(s) 310, 408
CviAII CATG 2 cut(s) 508, 646
CviQI GTAC 2 cut(s) 310, 408
DdeI CTNAG 2 cut(s) 276, 599
DpnI GATC 4 cut(s) 98, 401, 604, 650
DpnII GATC 4 cut(s) 96, 399, 602, 648
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 214
Eco91I GGTNACC 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 214
EcoO65I GGTNACC 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 131
FaeI CATG 2 cut(s) 511, 649
FaqI GGGAC 1 cut(s) 227
FatI CATG 2 cut(s) 507, 645
FauNDI CATATG 1 cut(s) 446
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 8 cut(s) 132, 291, 339, 372, 380, 387, 411, 497
GluI GCNGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 644
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 511, 649
HinfI GANTC 2 cut(s) 278, 621
HpaII CCGG 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 5 cut(s) 21, 193, 318, 600, 656
Hpy188III TCNNGA 3 cut(s) 332, 568, 618
Hpy8I GTNNAC 1 cut(s) 377
HpyAV CCTTC 2 cut(s) 445, 605
HpyCH4V TGCA 3 cut(s) 107, 154, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 276, 599
Hsp92II CATG 2 cut(s) 511, 649
Ksp22I TGATCA 1 cut(s) 399
Kzo9I GATC 4 cut(s) 96, 399, 602, 648
LguI GCTCTTC 1 cut(s) 439
LmnI GCTCC 1 cut(s) 468
Lsp1109I GCAGC 1 cut(s) 501
MaeI CTAG 8 cut(s) 132, 291, 339, 372, 380, 387, 411, 497
MaeIII GTNAC 1 cut(s) 347
MalI GATC 4 cut(s) 98, 401, 604, 650
MboI GATC 4 cut(s) 96, 399, 602, 648
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 1 cut(s) 131
MluCI AATT 5 cut(s) 15, 100, 115, 169, 457
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 7 cut(s) 248, 328, 367, 376, 477, 625, 633
MseI TTAA 5 cut(s) 24, 69, 228, 441, 608
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 212, 307
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 1 cut(s) 47
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 446
NdeII GATC 4 cut(s) 96, 399, 602, 648
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 2 cut(s) 511, 649
NlaIV GGNNCC 3 cut(s) 215, 260, 464
NspI RCATGY 1 cut(s) 511
PciI ACATGT 1 cut(s) 507
PciSI GCTCTTC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 621
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 1 cut(s) 516
PleI GAGTC 1 cut(s) 286
PpsI GAGTC 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 214
PscI ACATGT 1 cut(s) 507
PsiI TTATAA 1 cut(s) 266
Psp5II RGGWCCY 1 cut(s) 214
Psp6I CCWGG 1 cut(s) 305
PspEI GGTNACC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 3 cut(s) 215, 260, 464
PspPI GGNCC 2 cut(s) 214, 642
PspPPI RGGWCCY 1 cut(s) 214
PstI CTGCAG 1 cut(s) 326
RsaI GTAC 2 cut(s) 311, 409
RsaNI GTAC 2 cut(s) 310, 408
SapI GCTCTTC 1 cut(s) 439
SaqAI TTAA 5 cut(s) 24, 69, 228, 441, 608
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 4 cut(s) 96, 399, 602, 648
Sau96I GGNCC 2 cut(s) 214, 642
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 212, 307
SduI GDGCHC 1 cut(s) 131
SetI ASST 4 cut(s) 187, 219, 277, 311
SfcI CTRYAG 2 cut(s) 218, 322
SinI GGWCC 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 410
Sse9I AATT 5 cut(s) 15, 100, 115, 169, 457
SspMI CTAG 8 cut(s) 132, 291, 339, 372, 380, 387, 411, 497
StyD4I CCNGG 2 cut(s) 210, 305
TaqI TCGA 1 cut(s) 619
TasI AATT 5 cut(s) 15, 100, 115, 169, 457
TfiI GAWTC 1 cut(s) 621
Tru1I TTAA 5 cut(s) 24, 69, 228, 441, 608
Tru9I TTAA 5 cut(s) 24, 69, 228, 441, 608
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 514
TspDTI ATGAA 1 cut(s) 285
TspRI CASTG 1 cut(s) 36
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 15, 115
XceI RCATGY 1 cut(s) 511
XspI CTAG 8 cut(s) 132, 291, 339, 372, 380, 387, 411, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.