pycom02g19910

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0000194
Physical Location & Seq
Forward (+)
18016788 .. 18017318
531 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g19910.1

Sequence Viewer

Length: 531 bp
ATGAAAAACTGCCGGAATTTGAGACACCTGCTGGACAATTTTTGTGTGGCGTCGGGGCAGAAGGTAAATTTGGAGAAATCTAATGTATATTTTGGGGCTAACGTTCCGAAGGTGAATGCTGATCAGATGGGGAACGCTCTTGGTATGACAGTTGTAATCAATCCGGGAACATATTTGGGGGTCCCTGCCATTTGGGGTCGGTCGAAAAAGCGTGGTCTTGCCTATGTGAAAGGAAGAGTAATGGAAAAGCTACAAGGGTGGAAACAAAATACTCTTTCCCGTGCCGGTAAAGAGGTTTTAATTAAGGCTGTTATCCAAGCTATCCCGGCATACCCAATGTGCATTTTCAAATTCCCAGCCGCTGTTTGTAAGGAATTGGATGCGTTGGTGGCTGGGTTCTGGTGGGGATGTAAGGAGGGAGCCCACAAGATTCAATGGGTTTCAAAGGAGGTTTTGGGTTTGCCCAAAGATATGGGTGGTTTAGGCTTCAGAAATTTTCAGGAATTTAATGATGCTCTGCTTGCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

177

Amino Acids

19.46

Weight (kDa)

9.73

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 36
AciI CCGC 1 cut(s) 360
AclI AACGTT 1 cut(s) 102
AcsI RAATTY 5 cut(s) 16, 67, 350, 493, 503
AcuI CTGAAG 1 cut(s) 472
AcyI GRCGYC 1 cut(s) 50
AgsI TTSAA 3 cut(s) 349, 434, 444
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 250, 320
AluI AGCT 2 cut(s) 250, 320
Alw26I GTCTC 1 cut(s) 16
AlwNI CAGNNNCTG 1 cut(s) 362
ApoI RAATTY 5 cut(s) 16, 67, 350, 493, 503
AspS9I GGNCC 1 cut(s) 181
AsuC2I CCSGG 2 cut(s) 165, 326
AsuHPI GGTGA 1 cut(s) 124
AvaII GGWCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 424
BccI CCATC 1 cut(s) 121
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 2 cut(s) 165, 326
BcoDI GTCTC 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 36
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 165, 326
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 3 cut(s) 182, 183, 421
BmrFI CCNGG 2 cut(s) 165, 326
BmsI GCATC 2 cut(s) 370, 502
BpuMI CCSGG 2 cut(s) 165, 326
BsaHI GRCGYC 1 cut(s) 50
Bse118I RCCGGY 1 cut(s) 284
BseGI GGATG 2 cut(s) 385, 413
BseYI CCCAGC 2 cut(s) 355, 392
Bsh1285I CGRYCG 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 203
BsiSI CCGG 4 cut(s) 13, 164, 285, 326
BslFI GGGAC 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 121
BspACI CCGC 1 cut(s) 360
BspLI GGNNCC 3 cut(s) 182, 183, 421
BspMI ACCTGC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 284
BssMI GATC 1 cut(s) 121
BssNI GRCGYC 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 522
BstF5I GGATG 2 cut(s) 385, 413
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 1 cut(s) 121
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 326, 389, 521
BstSCI CCNGG 2 cut(s) 163, 324
BstXI CCANNNNNNTGG 1 cut(s) 472
BtsCI GGATG 2 cut(s) 385, 413
BveI ACCTGC 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 1 cut(s) 39
CviJI RGCY 8 cut(s) 98, 250, 308, 320, 359, 392, 422, 486
CviKI_1 RGCY 8 cut(s) 98, 250, 308, 320, 359, 392, 422, 486
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 472
EcoO109I RGGNCCY 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 424
FaiI YATR 6 cut(s) 88, 146, 172, 225, 331, 473
FaqI GGGAC 1 cut(s) 167
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 2 cut(s) 392, 420
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 1 cut(s) 360
GluI GCNGC 1 cut(s) 360
GsaI CCCAGC 2 cut(s) 359, 396
HapII CCGG 4 cut(s) 13, 164, 285, 326
HgaI GACGC 1 cut(s) 39
Hin1I GRCGYC 1 cut(s) 50
HinfI GANTC 1 cut(s) 430
HpaII CCGG 4 cut(s) 13, 164, 285, 326
HphI GGTGA 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 108, 126, 491
Hpy188III TCNNGA 1 cut(s) 500
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 55, 103
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 3 cut(s) 326, 389, 521
HpySE526I ACGT 1 cut(s) 102
Hsp92I GRCGYC 1 cut(s) 50
KflI GGGWCCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 419
LweI GCATC 2 cut(s) 370, 502
MaeII ACGT 1 cut(s) 102
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 8 cut(s) 16, 37, 67, 300, 350, 374, 493, 503
MnlI CCTC 3 cut(s) 286, 409, 442
MseI TTAA 3 cut(s) 299, 303, 507
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 4 cut(s) 13, 164, 285, 326
MspR9I CCNGG 2 cut(s) 165, 326
Mva1269I GAATGC 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 326, 389, 521
NciI CCSGG 2 cut(s) 165, 326
NdeII GATC 1 cut(s) 121
NlaIV GGNNCC 3 cut(s) 182, 183, 421
PacI TTAATTAA 1 cut(s) 303
PaqCI CACCTGC 1 cut(s) 36
PctI GAATGC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 163
PkrI GCNGC 1 cut(s) 361
PpuMI RGGWCCY 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 102
Psp5II RGGWCCY 1 cut(s) 181
PspFI CCCAGC 2 cut(s) 355, 392
PspN4I GGNNCC 3 cut(s) 182, 183, 421
PspPI GGNCC 1 cut(s) 181
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 362
SaqAI TTAA 3 cut(s) 299, 303, 507
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 2 cut(s) 165, 326
SduI GDGCHC 1 cut(s) 424
SetI ASST 8 cut(s) 30, 66, 105, 114, 252, 297, 322, 453
SfaNI GCATC 2 cut(s) 370, 502
SinI GGWCC 1 cut(s) 181
Sse9I AATT 8 cut(s) 16, 37, 67, 300, 350, 374, 493, 503
SsiI CCGC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 163, 324
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 203
TaqII GACCGA 1 cut(s) 189
TasI AATT 8 cut(s) 16, 37, 67, 300, 350, 374, 493, 503
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 299, 303, 507
Tru9I TTAA 3 cut(s) 299, 303, 507
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 5 cut(s) 16, 67, 350, 493, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.