Prupe.2G049100_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000194
Physical Location & Seq
Forward (+)
5643172 .. 5644717
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G049100.1

Sequence Viewer

Length: 1038 bp
ATGAGATTGTCAAAAGTGCATTGGATCAGTTGGCCTACTTTGGGGCTTCCGAAGAAACAGGGAGGCATGGGATTTAGAGACTTTAATGATTTCAATTTGGCCTTGCTAGCCAGACAATGTTGGAGATTAATCACGGAGCCAAATTCCCAATGGGCTCAACTCTTGAAGGCTCGTTATTTCCAGAAATGCAATTTTTTGGAGGCAAAGAAATGCGGTTGTGCTTCTTGGGCTTGGGCAAGCTTGCTGGAGGGAAGAAAGATCATTCTTCAGGGAGCTCGATGGCAAATTCTAAATTGTAGACAAGCAAAGCTTTGGATGGACTGTTGGATTCCCTCCCTTCACAACGGTAAACTCCACCCCCACTTACAGAACTCGCTCGACCCTAACACTCGGATTAGTCTAGCCTGGGGAAAAAAAGGCAAATTTTCAGTGCGGTCCGGGTACCATTCCATCCATGCCCTACAGGTTGAGACCACGGCCAGAAACGCCTCCACCTCATCACGGATTGACCCCTTGGTGTGGAAAAATATTTGGAAAGCTGAGGTTCCTCCAAAGATAAAGAATTTTCTATGGCGTGCGACTCATGGTAGACTGCCTACGACGTTCGCTCTCCACAAACGCAAAATTGCTGGCACCCGAAGGAATCACCAGAAAGCCCATGTTATTAAAGTTAACTTTGATGCTACTTGGTCGGCATCTTCTGGCAAAGCGGGAGTAGGTCTTATAGCACGAAATACAAATGGTGAGTTCGTGGGAGCGAAATGTCTATCTTTCCATGCGGAATCTACAATCATGGCTAAAGCAATTGCTGGTTTTGAAGGTTGCAAATGGGCATCTGAGCTGGGCTTATCAGATGTTTATTTTGAATCTGACTCCAAAGAACTGATCGAGAATGTGAAAGGAAACATAAAGCGTGGAAGATGGAGTCTCGACCCACTTCTGTCTATAATTCGTGAATGCAATTCCAATTTCTCAAACTATAACTGGGCATGTACCAGTAGGAAAAACAATGAAGCGGTAGATCATCTTGTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

346

Amino Acids

39.19

Weight (kDa)

10.01

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 441
AccB1I GGYRCC 2 cut(s) 441, 632
AccI GTMKAC 2 cut(s) 298, 589
AciI CCGC 5 cut(s) 213, 433, 710, 779, 1016
AclWI GGATC 1 cut(s) 32
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 4 cut(s) 142, 285, 422, 562
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 443, 994
AfiI CCNNNNNNNGG 3 cut(s) 41, 501, 519
AgsI TTSAA 4 cut(s) 94, 166, 818, 866
AjnI CCWGG 1 cut(s) 404
AluBI AGCT 5 cut(s) 240, 275, 310, 539, 841
AluI AGCT 5 cut(s) 240, 275, 310, 539, 841
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 3 cut(s) 72, 464, 932
AlwI GGATC 1 cut(s) 32
AoxI GGCC 3 cut(s) 32, 99, 477
ApoI RAATTY 4 cut(s) 142, 285, 422, 562
AseI ATTAAT 1 cut(s) 128
Asp718I GGTACC 1 cut(s) 441
AspS9I GGNCC 1 cut(s) 435
AsuC2I CCSGG 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 638, 755
AsuNHI GCTAGC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 435
BanI GGYRCC 2 cut(s) 441, 632
BanII GRGCYC 2 cut(s) 157, 277
Bbv12I GWGCWC 1 cut(s) 277
BbvCI CCTCAGC 1 cut(s) 540
BccI CCATC 4 cut(s) 273, 310, 458, 915
BceAI ACGGC 1 cut(s) 492
BciT130I CCWGG 1 cut(s) 406
BcnI CCSGG 1 cut(s) 439
BcoDI GTCTC 3 cut(s) 72, 464, 932
BfaI CTAG 2 cut(s) 107, 401
BfmI CTRYAG 1 cut(s) 461
Bme1390I CCNGG 2 cut(s) 406, 439
Bme18I GGWCC 1 cut(s) 435
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 4 cut(s) 138, 443, 546, 634
BmrFI CCNGG 2 cut(s) 406, 439
BmrI ACTGGG 1 cut(s) 994
BmsI GCATC 3 cut(s) 670, 704, 842
BmtI GCTAGC 1 cut(s) 110
BmuI ACTGGG 1 cut(s) 994
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 439
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 3 cut(s) 405, 474, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 41, 501, 519
Bse1I ACTGG 2 cut(s) 989, 996
BseBI CCWGG 1 cut(s) 406
BseDI CCNNGG 3 cut(s) 405, 474, 513
BseGI GGATG 2 cut(s) 321, 450
BseLI CCNNNNNNNGG 3 cut(s) 41, 501, 519
BseMII CTCAG 2 cut(s) 531, 828
BseNI ACTGG 2 cut(s) 989, 996
BseYI CCCAGC 1 cut(s) 841
BshFI GGCC 3 cut(s) 34, 101, 479
BshNI GGYRCC 2 cut(s) 441, 632
BsiHKAI GWGCWC 1 cut(s) 277
BsiSI CCGG 1 cut(s) 438
BslI CCNNNNNNNGG 3 cut(s) 41, 501, 519
BsmAI GTCTC 3 cut(s) 72, 464, 932
BsmI GAATGC 1 cut(s) 962
BsnI GGCC 3 cut(s) 34, 101, 479
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 157, 277
Bsp143I GATC 4 cut(s) 24, 258, 885, 1021
BspACI CCGC 5 cut(s) 213, 433, 710, 779, 1016
BspANI GGCC 3 cut(s) 34, 101, 479
BspCNI CTCAG 2 cut(s) 532, 829
BspLI GGNNCC 4 cut(s) 138, 443, 546, 634
BspOI GCTAGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 32
BspT107I GGYRCC 2 cut(s) 441, 632
BspTNI GGTCTC 1 cut(s) 464
BsrI ACTGG 2 cut(s) 989, 996
BssECI CCNNGG 3 cut(s) 405, 474, 513
BssMI GATC 4 cut(s) 24, 258, 885, 1021
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 406
Bst4CI ACNGT 2 cut(s) 323, 347
BstC8I GCNNGC 5 cut(s) 108, 238, 242, 576, 631
BstDEI CTNAG 2 cut(s) 540, 837
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 321, 450
BstKTI GATC 4 cut(s) 27, 261, 888, 1024
BstMAI GTCTC 3 cut(s) 72, 464, 932
BstMBI GATC 4 cut(s) 24, 258, 885, 1021
BstMWI GCNNNNNNNGC 3 cut(s) 107, 227, 485
BstNI CCWGG 1 cut(s) 406
BstNSI RCATGY 1 cut(s) 993
BstSCI CCNGG 2 cut(s) 404, 437
BstSFI CTRYAG 1 cut(s) 461
BsuRI GGCC 3 cut(s) 34, 101, 479
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 2 cut(s) 321, 450
BtsIMutI CAGTG 1 cut(s) 435
Cac8I GCNNGC 5 cut(s) 108, 238, 242, 576, 631
Cfr13I GGNCC 1 cut(s) 435
CpoI CGGWCCG 1 cut(s) 435
Csp6I GTAC 2 cut(s) 442, 993
CspI CGGWCCG 1 cut(s) 435
CviAII CATG 7 cut(s) 67, 455, 584, 659, 776, 793, 990
CviQI GTAC 2 cut(s) 442, 993
DdeI CTNAG 2 cut(s) 540, 837
DpnI GATC 4 cut(s) 26, 260, 887, 1023
DpnII GATC 4 cut(s) 24, 258, 885, 1021
EaeI YGGCCR 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 513
Eco24I GRGCYC 2 cut(s) 157, 277
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 1 cut(s) 435
Eco53kI GAGCTC 1 cut(s) 275
Eco57I CTGAAG 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 404
EcoT14I CCWWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 157, 277
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 7 cut(s) 70, 458, 587, 662, 779, 796, 993
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 7 cut(s) 66, 454, 583, 658, 775, 792, 989
FauI CCCGC 1 cut(s) 703
FblI GTMKAC 2 cut(s) 298, 589
FokI GGATG 2 cut(s) 328, 437
FriOI GRGCYC 2 cut(s) 157, 277
FspBI CTAG 2 cut(s) 107, 401
GsaI CCCAGC 1 cut(s) 845
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 3 cut(s) 34, 101, 479
HapII CCGG 1 cut(s) 438
Hin1II CATG 7 cut(s) 70, 458, 587, 662, 779, 796, 993
HincII GTYRAC 1 cut(s) 673
HindII GTYRAC 1 cut(s) 673
HindIII AAGCTT 2 cut(s) 238, 308
HinfI GANTC 7 cut(s) 328, 580, 643, 782, 866, 872, 925
HpaI GTTAAC 1 cut(s) 673
HpaII CCGG 1 cut(s) 438
HphI GGTGA 2 cut(s) 638, 755
Hpy166II GTNNAC 4 cut(s) 299, 350, 590, 673
Hpy188I TCNGA 5 cut(s) 51, 393, 838, 853, 871
Hpy188III TCNNGA 5 cut(s) 163, 181, 889, 929, 953
Hpy8I GTNNAC 4 cut(s) 299, 350, 590, 673
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 4 cut(s) 160, 347, 633, 812
HpyCH4III ACNGT 2 cut(s) 323, 347
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 4 cut(s) 19, 189, 825, 960
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 227, 485
HpyF3I CTNAG 2 cut(s) 540, 837
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 7 cut(s) 70, 458, 587, 662, 779, 796, 993
KpnI GGTACC 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 673
Kzo9I GATC 4 cut(s) 24, 258, 885, 1021
LmnI GCTCC 3 cut(s) 136, 272, 755
LweI GCATC 3 cut(s) 670, 704, 842
MaeI CTAG 2 cut(s) 107, 401
MaeII ACGT 1 cut(s) 602
MalI GATC 4 cut(s) 26, 260, 887, 1023
MboI GATC 4 cut(s) 24, 258, 885, 1021
MboII GAAGA 5 cut(s) 64, 257, 264, 690, 930
MfeI CAATTG 1 cut(s) 804
MhlI GDGCHC 2 cut(s) 157, 277
MlyI GAGTC 3 cut(s) 574, 866, 934
MmeI TCCRAC 2 cut(s) 101, 305
MnlI CCTC 8 cut(s) 56, 193, 241, 343, 499, 505, 535, 558
MseI TTAA 4 cut(s) 84, 128, 666, 672
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 2 cut(s) 406, 439
MunI CAATTG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 962
MvaI CCWGG 1 cut(s) 406
MwoI GCNNNNNNNGC 3 cut(s) 107, 227, 485
NciI CCSGG 1 cut(s) 439
NdeII GATC 4 cut(s) 24, 258, 885, 1021
NheI GCTAGC 1 cut(s) 106
NlaIII CATG 7 cut(s) 70, 458, 587, 662, 779, 796, 993
NlaIV GGNNCC 4 cut(s) 138, 443, 546, 634
NspI RCATGY 1 cut(s) 993
PctI GAATGC 1 cut(s) 962
PfeI GAWTC 4 cut(s) 328, 643, 782, 866
PleI GAGTC 3 cut(s) 574, 866, 933
PpsI GAGTC 3 cut(s) 574, 866, 933
PshBI ATTAAT 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 277
Psp6I CCWGG 1 cut(s) 404
PspFI CCCAGC 1 cut(s) 841
PspGI CCWGG 1 cut(s) 404
PspN4I GGNNCC 4 cut(s) 138, 443, 546, 634
PspPI GGNCC 1 cut(s) 435
RsaI GTAC 2 cut(s) 443, 994
RsaNI GTAC 2 cut(s) 442, 993
Rsr2I CGGWCCG 1 cut(s) 435
RsrII CGGWCCG 1 cut(s) 435
SacI GAGCTC 1 cut(s) 277
SaqAI TTAA 4 cut(s) 84, 128, 666, 672
Sau3AI GATC 4 cut(s) 24, 258, 885, 1021
Sau96I GGNCC 1 cut(s) 435
SchI GAGTC 3 cut(s) 574, 866, 934
ScrFI CCNGG 2 cut(s) 406, 439
SduI GDGCHC 2 cut(s) 157, 277
SfaNI GCATC 3 cut(s) 670, 704, 842
SfcI CTRYAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 435
SsiI CCGC 5 cut(s) 213, 433, 710, 779, 1016
SspI AATATT 1 cut(s) 529
SspMI CTAG 2 cut(s) 107, 401
SstI GAGCTC 1 cut(s) 277
StyD4I CCNGG 2 cut(s) 404, 437
StyI CCWWGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 323, 347
TaiI ACGT 1 cut(s) 605
TaqI TCGA 4 cut(s) 277, 378, 888, 930
TfiI GAWTC 4 cut(s) 328, 643, 782, 866
Tru1I TTAA 4 cut(s) 84, 128, 666, 672
Tru9I TTAA 4 cut(s) 84, 128, 666, 672
TscAI CASTG 1 cut(s) 435
TspDTI ATGAA 1 cut(s) 1026
TspGWI ACGGA 2 cut(s) 149, 517
TspRI CASTG 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 435
VspI ATTAAT 1 cut(s) 128
XapI RAATTY 4 cut(s) 142, 285, 422, 562
XceI RCATGY 1 cut(s) 993
XcmI CCANNNNNNNNNTGG 1 cut(s) 147
XmiI GTMKAC 2 cut(s) 298, 589
XspI CTAG 2 cut(s) 107, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.