Rmu_sc0019043.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019043.1
OG0000194
Physical Location & Seq
Reverse (-)
4408 .. 5745
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019043.1_g000001.1.cds

Sequence Viewer

Length: 927 bp
atggaaggtcagttgatgtttggactaatcgatgggttcccaactccaatgggggagctcattgtcccaatcaatcattgttggaggattgaccatattgaacccttcctttcggttgaggacacaaaagcaatcaagtcaatccctttgggcaaccccaacaaagaagacactcttatctggccaagagagaaagctggcaattataaggtcaagtctggttaccactgtttatactctacgattgctgctcctgaggttagtaaggcttcttcgtcccatcttattaatgctaaagtctggaaagtgatttggaactctggactcatcccaaagatatccaatttcctttggagagctatttcaaatgctctcccatgtttctggaacctgttaaaaaagaaaatcattatttctcccctttgtagtctctgtggtcaattcccggaaacaattgagcattgcctccttctatgcccttggaccaaacgggtttggtttggctgccctctcggatatcgtccaaggtttgagaaaatctcctcgctggactgttggcttctaagtattgtggaagagagtacaaaactggtagatgatccctcaaaatttctggagatggtgggtttcattctctttgaaatttggaaaatgagatgtgcagctatctacaaaaatggtttggtaaacccggatatagttatctcaaacgccaacttcagttcccttgaatggacaaatgccaggttcaagtcccacttcagtcacttcacttgcatttggactccccgtgaagctaaccgttcagcggatgctgcggccaagctagcaaagcagaggcttttatcccaagagtggatgaactatcccccagcctcttttttgtcggctcttcgtcgtgatgctgaaccacgacctccagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

308

Amino Acids

35.17

Weight (kDa)

8.81

Isoelectric Point (pI)

32.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 207
AciI CCGC 2 cut(s) 809, 818
AclWI GGATC 1 cut(s) 593
AcoI YGGCCR 2 cut(s) 182, 819
AcsI RAATTY 2 cut(s) 608, 642
AcuI CTGAAG 2 cut(s) 703, 745
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 3 cut(s) 732, 808, 855
AgsI TTSAA 5 cut(s) 101, 366, 641, 731, 751
AjnI CCWGG 1 cut(s) 743
AluBI AGCT 6 cut(s) 58, 197, 359, 665, 797, 826
AluI AGCT 6 cut(s) 58, 197, 359, 665, 797, 826
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 434
AlwI GGATC 1 cut(s) 593
AoxI GGCC 2 cut(s) 182, 819
ApeKI GCWGC 4 cut(s) 248, 504, 662, 815
ApoI RAATTY 2 cut(s) 608, 642
AseI ATTAAT 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 483
AsuC2I CCSGG 2 cut(s) 446, 692
AsuNHI GCTAGC 1 cut(s) 826
AvaII GGWCC 1 cut(s) 483
AxyI CCTNAGG 1 cut(s) 255
BalI TGGCCA 1 cut(s) 184
BanII GRGCYC 1 cut(s) 60
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 4 cut(s) 235, 491, 674, 802
BccI CCATC 3 cut(s) 26, 288, 613
BciT130I CCWGG 1 cut(s) 745
BcnI CCSGG 2 cut(s) 446, 692
BcoDI GTCTC 1 cut(s) 434
BfaI CTAG 1 cut(s) 827
BisI GCNGC 5 cut(s) 249, 505, 663, 816, 819
BlsI GCNGC 5 cut(s) 250, 506, 664, 817, 820
Bme1390I CCNGG 3 cut(s) 446, 692, 745
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 2 cut(s) 38, 389
BmrFI CCNGG 3 cut(s) 446, 692, 745
BmsI GCATC 2 cut(s) 802, 892
BmtI GCTAGC 1 cut(s) 830
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 2 cut(s) 635, 903
BpuMI CCSGG 2 cut(s) 446, 692
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 479, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 732, 808, 855
Bse1I ACTGG 1 cut(s) 594
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 460
BseBI CCWGG 1 cut(s) 745
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 479, 524
BseGI GGATG 3 cut(s) 327, 817, 864
BseLI CCNNNNNNNGG 3 cut(s) 732, 808, 855
BseMI GCAATG 1 cut(s) 460
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 532
BseXI GCAGC 4 cut(s) 235, 491, 674, 802
BseYI CCCAGC 1 cut(s) 871
BsgI GTGCAG 1 cut(s) 681
BshFI GGCC 2 cut(s) 184, 821
BshVI ATCGAT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 2 cut(s) 446, 692
BslFI GGGAC 3 cut(s) 50, 262, 739
BslI CCNNNNNNNGG 3 cut(s) 732, 808, 855
BsmAI GTCTC 1 cut(s) 434
BsmFI GGGAC 3 cut(s) 50, 262, 739
BsnI GGCC 2 cut(s) 184, 821
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 598
BspACI CCGC 2 cut(s) 809, 818
BspANI GGCC 2 cut(s) 184, 821
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 38, 389
BspOI GCTAGC 1 cut(s) 830
BspPI GGATC 1 cut(s) 593
BspQI GCTCTTC 1 cut(s) 897
BsrDI GCAATG 1 cut(s) 460
BsrI ACTGG 1 cut(s) 594
BssECI CCNNGG 2 cut(s) 479, 524
BssMI GATC 1 cut(s) 598
BssT1I CCWWGG 2 cut(s) 479, 524
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 3 cut(s) 230, 554, 803
Bst6I CTCTTC 2 cut(s) 570, 897
BstC8I GCNNGC 2 cut(s) 199, 828
BstDEI CTNAG 2 cut(s) 255, 563
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 3 cut(s) 327, 817, 864
BstKTI GATC 1 cut(s) 601
BstMAI GTCTC 1 cut(s) 434
BstMBI GATC 1 cut(s) 598
BstMWI GCNNNNNNNGC 3 cut(s) 815, 827, 832
BstNI CCWGG 1 cut(s) 745
BstPI GGTNACC 1 cut(s) 221
BstSCI CCNGG 3 cut(s) 444, 690, 743
BstV1I GCAGC 4 cut(s) 235, 491, 674, 802
BstV2I GAAGAC 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 255
BsuRI GGCC 2 cut(s) 184, 821
BsuTUI ATCGAT 1 cut(s) 30
BtsCI GGATG 3 cut(s) 327, 817, 864
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 199, 828
Cfr13I GGNCC 1 cut(s) 483
ClaI ATCGAT 1 cut(s) 30
Csp6I GTAC 1 cut(s) 582
CviAII CATG 1 cut(s) 378
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 2 cut(s) 255, 563
DpnI GATC 1 cut(s) 600
DpnII GATC 1 cut(s) 598
EaeI YGGCCR 2 cut(s) 182, 819
Eam1104I CTCTTC 2 cut(s) 570, 897
EarI CTCTTC 2 cut(s) 570, 897
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 479, 524
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 2 cut(s) 339, 518
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 703, 745
Eco81I CCTNAGG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 58
EcoO65I GGTNACC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 743
EcoRV GATATC 2 cut(s) 339, 518
EcoT14I CCWWGG 2 cut(s) 479, 524
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 2 cut(s) 479, 524
FaeI CATG 1 cut(s) 381
FaiI YATR 6 cut(s) 96, 207, 235, 379, 475, 698
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 743, 775
FaqI GGGAC 3 cut(s) 50, 262, 739
FatI CATG 1 cut(s) 377
Fnu4HI GCNGC 5 cut(s) 249, 505, 663, 816, 819
FokI GGATG 3 cut(s) 314, 824, 871
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 5 cut(s) 249, 505, 663, 816, 819
FspBI CTAG 1 cut(s) 827
GluI GCNGC 5 cut(s) 249, 505, 663, 816, 819
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 2 cut(s) 635, 903
HaeIII GGCC 2 cut(s) 184, 821
HapII CCGG 2 cut(s) 446, 692
Hin1II CATG 1 cut(s) 381
HinfI GANTC 2 cut(s) 324, 784
HpaII CCGG 2 cut(s) 446, 692
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 1 cut(s) 515
Hpy188III TCNNGA 7 cut(s) 254, 301, 321, 385, 614, 899, 920
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 1 cut(s) 900
HpyAV CCTTC 2 cut(s) 115, 479
HpyCH4III ACNGT 3 cut(s) 230, 554, 803
HpyCH4V TGCA 2 cut(s) 662, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 815, 827, 832
HpyF3I CTNAG 2 cut(s) 255, 563
Hsp92II CATG 1 cut(s) 381
Kzo9I GATC 1 cut(s) 598
LguI GCTCTTC 1 cut(s) 897
LmnI GCTCC 2 cut(s) 55, 256
Lsp1109I GCAGC 4 cut(s) 235, 491, 674, 802
LweI GCATC 2 cut(s) 802, 892
MaeI CTAG 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 221, 764
MalI GATC 1 cut(s) 600
MboI GATC 1 cut(s) 598
MboII GAAGA 4 cut(s) 179, 264, 587, 884
MfeI CAATTG 1 cut(s) 453
MhlI GDGCHC 1 cut(s) 60
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 6 cut(s) 202, 343, 440, 453, 608, 642
MluNI TGGCCA 1 cut(s) 184
MlyI GAGTC 2 cut(s) 318, 778
MmeI TCCRAC 1 cut(s) 62
Mox20I TGGCCA 1 cut(s) 184
MscI TGGCCA 1 cut(s) 184
MseI TTAA 2 cut(s) 288, 395
Msp20I TGGCCA 1 cut(s) 184
MspA1I CMGCKG 1 cut(s) 809
MspI CCGG 2 cut(s) 446, 692
MspR9I CCNGG 3 cut(s) 446, 692, 745
MunI CAATTG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 815, 827, 832
NciI CCSGG 2 cut(s) 446, 692
NdeII GATC 1 cut(s) 598
NheI GCTAGC 1 cut(s) 826
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 38, 389
NmuCI GTSAC 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 897
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 5 cut(s) 250, 506, 664, 817, 820
PleI GAGTC 2 cut(s) 318, 778
PpsI GAGTC 2 cut(s) 318, 778
PshBI ATTAAT 1 cut(s) 288
PsiI TTATAA 1 cut(s) 207
Psp124BI GAGCTC 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 743
PspEI GGTNACC 1 cut(s) 221
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 2 cut(s) 38, 389
PspPI GGNCC 1 cut(s) 483
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
SacI GAGCTC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 897
SaqAI TTAA 2 cut(s) 288, 395
SatI GCNGC 5 cut(s) 249, 505, 663, 816, 819
Sau3AI GATC 1 cut(s) 598
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 318, 778
ScrFI CCNGG 3 cut(s) 446, 692, 745
SduI GDGCHC 1 cut(s) 60
SfaNI GCATC 2 cut(s) 802, 892
SinI GGWCC 1 cut(s) 483
Sse9I AATT 6 cut(s) 202, 343, 440, 453, 608, 642
SsiI CCGC 2 cut(s) 809, 818
SspMI CTAG 1 cut(s) 827
SstI GAGCTC 1 cut(s) 60
StyD4I CCNGG 3 cut(s) 444, 690, 743
StyI CCWWGG 2 cut(s) 479, 524
TaaI ACNGT 3 cut(s) 230, 554, 803
TaqI TCGA 1 cut(s) 30
TasI AATT 6 cut(s) 202, 343, 440, 453, 608, 642
TatI WGTACW 1 cut(s) 581
TauI GCSGC 1 cut(s) 821
Tru1I TTAA 2 cut(s) 288, 395
Tru9I TTAA 2 cut(s) 288, 395
TscAI CASTG 1 cut(s) 233
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 4 cut(s) 248, 504, 662, 815
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 2 cut(s) 619, 875
TspRI CASTG 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 483
VspI ATTAAT 1 cut(s) 288
XapI RAATTY 2 cut(s) 608, 642
XspI CTAG 1 cut(s) 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.