Rmu_ssc0000126.1_g000001

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000126.1
OG0000194
Physical Location & Seq
Reverse (-)
3876 .. 5227
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000126.1_g000001.1.cds

Sequence Viewer

Length: 603 bp
atgttggctaagcaagcttggagggttgcttctaacccggggtctcttgtggcacaattgtacaaagccaggtattatcctaatggttcattttggaatgcaaaagaacatgctactccttactcttggaggagtatttttgctactagaaatttgttgcatgaaggagctcactggccacaactgttgggatcggggcaggatgatttggctaaagtaagtgaattgatcatccgtcctaatgtacgggatgagcacaaaattcataccacttttgtacatgaagatgcaaaagctattttggcaattcccttgagttctagggcaactattggattcttggttagagattctcaggggatgtttttgggagcagttgggaaggtggtgactggtgttcaatttgctgaacatgttgaactaattacttgtagggaggcagtggattatgtgttagaacacgggctttttcttgtgttgttggagactgattgtttggttttgaaacaacaattgtgtcaagaggagctgcagaattcttcaaatcttggaaggttatatgagtatctcagactagatttagatgcagggcatcaagtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

200

Amino Acids

22.52

Weight (kDa)

6.29

Isoelectric Point (pI)

26.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 199
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 3 cut(s) 151, 261, 535
AfaI GTAC 3 cut(s) 62, 246, 279
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 4 cut(s) 401, 419, 505, 543
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 17, 170, 296, 529
AluI AGCT 4 cut(s) 17, 170, 296, 529
Alw21I GWGCWC 2 cut(s) 172, 258
Alw26I GTCTC 2 cut(s) 48, 479
AlwI GGATC 1 cut(s) 199
Ama87I CYCGRG 1 cut(s) 37
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 529
ApoI RAATTY 3 cut(s) 151, 261, 535
ArsI GACNNNNNNTTYG 2 cut(s) 478, 510
AsuC2I CCSGG 2 cut(s) 38, 39
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 37
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 2 cut(s) 172, 258
BbvI GCAGC 1 cut(s) 516
BciT130I CCWGG 1 cut(s) 70
BclI TGATCA 1 cut(s) 228
BcnI CCSGG 2 cut(s) 38, 39
BcoDI GTCTC 2 cut(s) 48, 479
BfaI CTAG 3 cut(s) 147, 321, 575
BfmI CTRYAG 1 cut(s) 530
BisI GCNGC 1 cut(s) 530
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 1 cut(s) 531
Bme1390I CCNGG 3 cut(s) 38, 39, 70
BmeT110I CYCGRG 1 cut(s) 37
BmrFI CCNGG 3 cut(s) 38, 39, 70
BmsI GCATC 2 cut(s) 277, 574
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 334
BpuMI CCSGG 2 cut(s) 38, 39
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 37, 38
Bse1I ACTGG 2 cut(s) 179, 397
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 37, 38
BseGI GGATG 4 cut(s) 208, 231, 256, 366
BseMII CTCAG 2 cut(s) 368, 583
BseNI ACTGG 2 cut(s) 179, 397
BseRI GAGGAG 2 cut(s) 145, 539
BseXI GCAGC 1 cut(s) 516
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 172, 258
BsiHKCI CYCGRG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 38
BsmAI GTCTC 2 cut(s) 48, 479
BsmI GAATGC 1 cut(s) 103
BsnI GGCC 1 cut(s) 178
Bso31I GGTCTC 1 cut(s) 48
BsoBI CYCGRG 1 cut(s) 37
Bsp1286I GDGCHC 2 cut(s) 172, 258
Bsp1407I TGTACA 2 cut(s) 60, 277
Bsp143I GATC 2 cut(s) 191, 228
Bsp1720I GCTNAGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 367, 582
BspMAI CTGCAG 1 cut(s) 534
BspPI GGATC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 48
BsrGI TGTACA 2 cut(s) 60, 277
BsrI ACTGG 2 cut(s) 179, 397
BssECI CCNNGG 2 cut(s) 37, 38
BssMI GATC 2 cut(s) 191, 228
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 186
BstAUI TGTACA 2 cut(s) 60, 277
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 9, 354, 569
BstF5I GGATG 4 cut(s) 208, 231, 256, 366
BstKTI GATC 2 cut(s) 194, 231
BstMAI GTCTC 2 cut(s) 48, 479
BstMBI GATC 2 cut(s) 191, 228
BstMWI GCNNNNNNNGC 2 cut(s) 14, 302
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 2 cut(s) 113, 416
BstSCI CCNGG 3 cut(s) 36, 37, 68
BstSFI CTRYAG 1 cut(s) 530
BstV1I GCAGC 1 cut(s) 516
BsuRI GGCC 1 cut(s) 178
BtsCI GGATG 4 cut(s) 208, 231, 256, 366
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 2 cut(s) 172, 447
Cac8I GCNNGC 1 cut(s) 15
Cfr9I CCCGGG 1 cut(s) 37
Csp6I GTAC 3 cut(s) 61, 245, 278
CspCI CAANNNNNGTGG 2 cut(s) 168, 203
CviAII CATG 4 cut(s) 110, 161, 281, 413
CviJI RGCY 9 cut(s) 8, 17, 68, 170, 178, 212, 296, 466, 529
CviKI_1 RGCY 9 cut(s) 8, 17, 68, 170, 178, 212, 296, 466, 529
CviQI GTAC 3 cut(s) 61, 245, 278
DdeI CTNAG 3 cut(s) 9, 354, 569
DpnI GATC 2 cut(s) 193, 230
DpnII GATC 2 cut(s) 191, 228
EaeI YGGCCR 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 4 cut(s) 113, 164, 284, 416
FaiI YATR 8 cut(s) 111, 162, 267, 282, 414, 450, 559, 561
FatI CATG 4 cut(s) 109, 160, 280, 412
FbaI TGATCA 1 cut(s) 228
Fnu4HI GCNGC 1 cut(s) 530
FokI GGATG 4 cut(s) 215, 218, 263, 373
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 530
FspBI CTAG 3 cut(s) 147, 321, 575
GluI GCNGC 1 cut(s) 530
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 38
Hin1II CATG 4 cut(s) 113, 164, 284, 416
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 2 cut(s) 336, 350
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 400
Hpy188I TCNGA 1 cut(s) 572
Hpy188III TCNNGA 1 cut(s) 521
HpyAV CCTTC 3 cut(s) 158, 376, 546
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 101, 160, 290, 532, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 302
HpyF3I CTNAG 3 cut(s) 9, 354, 569
Hsp92II CATG 4 cut(s) 113, 164, 284, 416
Ksp22I TGATCA 1 cut(s) 228
Kzo9I GATC 2 cut(s) 191, 228
LmnI GCTCC 3 cut(s) 167, 371, 526
LpnPI CCDG 8 cut(s) 51, 55, 82, 160, 185, 341, 378, 573
Lsp1109I GCAGC 1 cut(s) 516
LweI GCATC 2 cut(s) 277, 574
MaeI CTAG 3 cut(s) 147, 321, 575
MaeIII GTNAC 1 cut(s) 388
MalI GATC 2 cut(s) 193, 230
MboI GATC 2 cut(s) 191, 228
MboII GAAGA 2 cut(s) 296, 531
MfeI CAATTG 2 cut(s) 56, 512
MhlI GDGCHC 2 cut(s) 172, 258
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 9 cut(s) 56, 151, 224, 261, 306, 401, 423, 512, 535
MluNI TGGCCA 1 cut(s) 178
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 4 cut(s) 15, 123, 430, 517
Mox20I TGGCCA 1 cut(s) 178
MscI TGGCCA 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 3 cut(s) 38, 39, 70
MunI CAATTG 2 cut(s) 56, 512
Mva1269I GAATGC 1 cut(s) 103
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 2 cut(s) 14, 302
NciI CCSGG 2 cut(s) 38, 39
NdeII GATC 2 cut(s) 191, 228
NlaIII CATG 4 cut(s) 113, 164, 284, 416
NmuCI GTSAC 1 cut(s) 388
NspI RCATGY 2 cut(s) 113, 416
PciI ACATGT 1 cut(s) 412
PctI GAATGC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 336, 350
PkrI GCNGC 1 cut(s) 531
PscI ACATGT 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PstI CTGCAG 1 cut(s) 534
RsaI GTAC 3 cut(s) 62, 246, 279
RsaNI GTAC 3 cut(s) 61, 245, 278
RseI CAYNNNNRTG 1 cut(s) 285
SacI GAGCTC 1 cut(s) 172
SatI GCNGC 1 cut(s) 530
Sau3AI GATC 2 cut(s) 191, 228
ScrFI CCNGG 3 cut(s) 38, 39, 70
SduI GDGCHC 2 cut(s) 172, 258
SetI ASST 7 cut(s) 19, 74, 172, 298, 387, 531, 557
SfaNI GCATC 2 cut(s) 277, 574
SfcI CTRYAG 1 cut(s) 530
SmaI CCCGGG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 9 cut(s) 56, 151, 224, 261, 306, 401, 423, 512, 535
SspMI CTAG 3 cut(s) 147, 321, 575
SstI GAGCTC 1 cut(s) 172
StyD4I CCNGG 3 cut(s) 36, 37, 68
TaaI ACNGT 1 cut(s) 186
TasI AATT 9 cut(s) 56, 151, 224, 261, 306, 401, 423, 512, 535
TatI WGTACW 2 cut(s) 60, 277
TfiI GAWTC 2 cut(s) 336, 350
TscAI CASTG 2 cut(s) 179, 447
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 1 cut(s) 529
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 4 cut(s) 78, 177, 254, 297
TspGWI ACGGA 1 cut(s) 224
TspMI CCCGGG 1 cut(s) 37
TspRI CASTG 2 cut(s) 179, 447
XapI RAATTY 3 cut(s) 151, 261, 535
XceI RCATGY 2 cut(s) 113, 416
XmaI CCCGGG 1 cut(s) 37
XspI CTAG 3 cut(s) 147, 321, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.