Rmu_ssc0000152.1_g000009

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000152.1
OG0000194
Physical Location & Seq
Forward (+)
47831 .. 50320
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000152.1_g000009.1.cds

Sequence Viewer

Length: 846 bp
atgaagatgttcagggactctattttcaaggcaaggcttcttaatctgggatttcaaggagctttggttaatggtacatggtgtgatacttggcctcagactgaaattttcaattatcccaatgtgggttctgatcactcgccagttcttgtgtcttgcgctcctatggattctaaagctcataaacatttcaaatacgaggagcgctggaaacgtgatcctgagtgttttgaagtgttgaatctcacccaggctgggaaagaaattcttatgaaatctgtcatttctgctatccctgcttatcatatggcaataattgtattcattgatgggctatgtaaggagattgattctcttattgcgaacttttggtggggacagactgatatggggggtaaggtgcattggttgagttgggaaaagcttggattgcctaaggaggagggcggtatgggttttaagtgtctacgagatttcaacctagctctccttgccaaagtaggttggagaattattcaacaacctaaagctttatgggttcaagtgctcaagggattatattttcttcattgtgatttcttgtcagcttctaaaggctgcagagcttcgtgggcttggagtagcattctagagggaagaaagttattaagtgatcatgctttgtggcatgtactcaatggggagtccattagtacttggaaagataaatggattccaggggttttaggtgggaggttgagtgcttctcatctgtacgcttctgagtttgatcctttcagagggttgcagacttggttgattggtcttcaacctcttggaatctggatcctattgctcagcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

281

Amino Acids

31.99

Weight (kDa)

8.62

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 466
AciI CCGC 1 cut(s) 447
AclWI GGATC 4 cut(s) 212, 764, 820, 833
AcsI RAATTY 2 cut(s) 105, 264
AfaI GTAC 4 cut(s) 76, 672, 694, 755
AfeI AGCGCT 1 cut(s) 206
AfiI CCNNNNNNNGG 3 cut(s) 125, 255, 779
AjnI CCWGG 2 cut(s) 249, 715
AluBI AGCT 7 cut(s) 62, 179, 424, 485, 530, 587, 605
AluI AGCT 7 cut(s) 62, 179, 424, 485, 530, 587, 605
Alw21I GWGCWC 1 cut(s) 549
AlwI GGATC 4 cut(s) 212, 764, 820, 833
Aor51HI AGCGCT 1 cut(s) 206
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 597
ApoI RAATTY 2 cut(s) 105, 264
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 161, 207
AsuHPI GGTGA 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 435
BamHI GGATCC 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 1 cut(s) 584
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 251, 717
BclI TGATCA 2 cut(s) 133, 652
BfaI CTAG 2 cut(s) 482, 629
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 1 cut(s) 208
BisI GCNGC 1 cut(s) 598
BlpI GCTNAGC 1 cut(s) 836
BlsI GCNGC 1 cut(s) 599
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 2 cut(s) 251, 717
BmiI GGNNCC 1 cut(s) 827
BmrFI CCNGG 2 cut(s) 251, 717
BpiI GAAGAC 1 cut(s) 797
BplI GAGNNNNNCTC 2 cut(s) 730, 762
Bpu1102I GCTNAGC 1 cut(s) 836
BpuEI CTTGAG 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 249, 716
BsaXI ACNNNNNCTCC 4 cut(s) 51, 81, 724, 754
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 255, 779
Bse1I ACTGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 435
BseBI CCWGG 2 cut(s) 251, 717
BseDI CCNNGG 2 cut(s) 249, 716
BseLI CCNNNNNNNGG 3 cut(s) 125, 255, 779
BseMII CTCAG 3 cut(s) 110, 213, 753
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 215, 455
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 254
BshFI GGCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 549
BslFI GGGAC 2 cut(s) 29, 390
BslI CCNNNNNNNGG 3 cut(s) 125, 255, 779
BsmFI GGGAC 2 cut(s) 29, 390
BsmI GAATGC 1 cut(s) 624
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 549
Bsp143I GATC 5 cut(s) 133, 217, 652, 769, 825
Bsp1720I GCTNAGC 1 cut(s) 836
BspACI CCGC 1 cut(s) 447
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 3 cut(s) 109, 214, 754
BspLI GGNNCC 1 cut(s) 827
BspMAI CTGCAG 1 cut(s) 602
BspPI GGATC 4 cut(s) 212, 764, 820, 833
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 249, 716
BssMI GATC 5 cut(s) 133, 217, 652, 769, 825
Bst2UI CCWGG 2 cut(s) 251, 717
BstDEI CTNAG 5 cut(s) 96, 222, 435, 762, 836
BstENI CCTNNNNNAGG 1 cut(s) 777
BstH2I RGCGCY 1 cut(s) 208
BstHHI GCGC 2 cut(s) 161, 207
BstKTI GATC 5 cut(s) 136, 220, 655, 772, 828
BstMBI GATC 5 cut(s) 133, 217, 652, 769, 825
BstMWI GCNNNNNNNGC 4 cut(s) 296, 430, 491, 611
BstNI CCWGG 2 cut(s) 251, 717
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 2 cut(s) 249, 715
BstSFI CTRYAG 1 cut(s) 598
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 1 cut(s) 797
BstX2I RGATCY 1 cut(s) 825
BstYI RGATCY 1 cut(s) 825
Bsu36I CCTNAGG 1 cut(s) 435
BsuRI GGCC 1 cut(s) 94
CfoI GCGC 2 cut(s) 161, 207
Csp6I GTAC 4 cut(s) 75, 671, 693, 754
CviAII CATG 3 cut(s) 78, 656, 668
CviQI GTAC 4 cut(s) 75, 671, 693, 754
DdeI CTNAG 5 cut(s) 96, 222, 435, 762, 836
DpnI GATC 5 cut(s) 135, 219, 654, 771, 827
DpnII GATC 5 cut(s) 133, 217, 652, 769, 825
Eco47III AGCGCT 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 435
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoRII CCWGG 2 cut(s) 249, 715
FaeI CATG 3 cut(s) 81, 659, 671
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 2 cut(s) 29, 390
FatI CATG 3 cut(s) 77, 655, 667
FauNDI CATATG 1 cut(s) 306
FbaI TGATCA 2 cut(s) 133, 652
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 598
Fsp4HI GCNGC 1 cut(s) 598
FspBI CTAG 2 cut(s) 482, 629
GlaI GCGC 2 cut(s) 160, 206
GluI GCNGC 1 cut(s) 598
GsaI CCCAGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 208
HaeIII GGCC 1 cut(s) 94
HhaI GCGC 2 cut(s) 161, 207
Hin1II CATG 3 cut(s) 81, 659, 671
Hin6I GCGC 2 cut(s) 159, 205
HinP1I GCGC 2 cut(s) 159, 205
HindIII AAGCTT 2 cut(s) 422, 528
HinfI GANTC 7 cut(s) 17, 170, 241, 350, 683, 712, 819
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 4 cut(s) 99, 133, 763, 779
Hpy188III TCNNGA 3 cut(s) 221, 629, 823
Hpy8I GTNNAC 1 cut(s) 467
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 403, 600, 787
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 430, 491, 611
HpyF3I CTNAG 5 cut(s) 96, 222, 435, 762, 836
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 3 cut(s) 81, 659, 671
HspAI GCGC 2 cut(s) 159, 205
Ksp22I TGATCA 2 cut(s) 133, 652
Kzo9I GATC 5 cut(s) 133, 217, 652, 769, 825
LmnI GCTCC 3 cut(s) 59, 166, 202
Lsp1109I GCAGC 1 cut(s) 584
MaeI CTAG 2 cut(s) 482, 629
MaeII ACGT 1 cut(s) 214
MalI GATC 5 cut(s) 135, 219, 654, 771, 827
MboI GATC 5 cut(s) 133, 217, 652, 769, 825
MboII GAAGA 4 cut(s) 16, 557, 648, 797
MflI RGATCY 1 cut(s) 825
MhlI GDGCHC 1 cut(s) 549
MluCI AATT 5 cut(s) 105, 112, 264, 315, 510
MlyI GAGTC 2 cut(s) 11, 692
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 8 cut(s) 105, 193, 433, 436, 625, 726, 773, 822
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 4 cut(s) 42, 69, 459, 647
MspR9I CCNGG 2 cut(s) 251, 717
Mva1269I GAATGC 1 cut(s) 624
MvaI CCWGG 2 cut(s) 251, 717
MwoI GCNNNNNNNGC 4 cut(s) 296, 430, 491, 611
NdeI CATATG 1 cut(s) 306
NdeII GATC 5 cut(s) 133, 217, 652, 769, 825
NlaIII CATG 3 cut(s) 81, 659, 671
NlaIV GGNNCC 1 cut(s) 827
NspI RCATGY 1 cut(s) 671
PctI GAATGC 1 cut(s) 624
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 5 cut(s) 170, 241, 350, 712, 819
PkrI GCNGC 1 cut(s) 599
PleI GAGTC 2 cut(s) 11, 691
PpsI GAGTC 2 cut(s) 11, 691
Psp6I CCWGG 2 cut(s) 249, 715
PspFI CCCAGC 1 cut(s) 254
PspGI CCWGG 2 cut(s) 249, 715
PspN4I GGNNCC 1 cut(s) 827
PstI CTGCAG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 825
RsaI GTAC 4 cut(s) 76, 672, 694, 755
RsaNI GTAC 4 cut(s) 75, 671, 693, 754
SaqAI TTAA 4 cut(s) 42, 69, 459, 647
SatI GCNGC 1 cut(s) 598
Sau3AI GATC 5 cut(s) 133, 217, 652, 769, 825
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 2 cut(s) 11, 692
ScrFI CCNGG 2 cut(s) 251, 717
SduI GDGCHC 1 cut(s) 549
SfcI CTRYAG 1 cut(s) 598
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 5 cut(s) 105, 112, 264, 315, 510
SsiI CCGC 1 cut(s) 447
SspMI CTAG 2 cut(s) 482, 629
StyD4I CCNGG 2 cut(s) 249, 715
TaiI ACGT 1 cut(s) 217
TasI AATT 5 cut(s) 105, 112, 264, 315, 510
TatI WGTACW 2 cut(s) 670, 692
TfiI GAWTC 5 cut(s) 170, 241, 350, 712, 819
Tru1I TTAA 4 cut(s) 42, 69, 459, 647
Tru9I TTAA 4 cut(s) 42, 69, 459, 647
TseI GCWGC 1 cut(s) 597
TspDTI ATGAA 4 cut(s) 17, 287, 313, 557
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 2 cut(s) 105, 264
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 482, 629
ZrmI AGTACT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.