Rmu_sc0003743.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003743.1
OG0000194
Physical Location & Seq
Reverse (-)
13611 .. 14593
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003743.1_g000003.1.cds

Sequence Viewer

Length: 786 bp
atgcaatatgagaaaaaatttattctattttttaaattattattggggatttggggcgggttcggaggcttcgtctcttgtggggatggggacggggagaatccccagtatatttttattggggattggggaggggatggggggggggattatctcggggatgaggatggtattgtgatccccatccccaacccgccccattaccatggggtttacgccttactgaggcttacaggaaaacgcctcggcctacgcctcagcattttacaacaatattgtttgtttgacgcggaagtagctaatactattctttcaatccctgtgagtaagtttgggtgccaagactggttaatttggcatttcacgaatcacgggatgtattcggtcaaatcaggctataaagttgcacaagagctggacaggagtggtttgttgggtaggaagggagatgtaaaacataatttagctaggcgtggcgtgaaagtgagagatgggtgtaatcactgtgatacagaggaggaaactcttgttcacgtattttttaggtgcgagtatgcgagatgtttttggtttgggaatccactgcagttggatgttagagtgattggaggggaggattttatttcatgctggcaatgtttgtgcaagttgttgggcaagcgaagtgatggaggtgatgcagtagcctgggcggctatggcagtgtggcgtttgtggaagtgccgaaaccatgtgcaatttggagggaagattattgaaccccaagttgcactggaagtgctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

261

Amino Acids

29.34

Weight (kDa)

6.7

Isoelectric Point (pI)

40.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 336
AccII CGCG 1 cut(s) 290
AciI CCGC 4 cut(s) 57, 194, 290, 692
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 17
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 2 cut(s) 315, 758
AjnI CCWGG 1 cut(s) 686
AluBI AGCT 3 cut(s) 299, 415, 467
AluI AGCT 3 cut(s) 299, 415, 467
Alw21I GWGCWC 1 cut(s) 783
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 172
Ama87I CYCGRG 1 cut(s) 155
AoxI GGCC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 17
AsuHPI GGTGA 1 cut(s) 686
AvaI CYCGRG 1 cut(s) 155
BanI GGYRCC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 783
BbvCI CCTCAGC 1 cut(s) 257
BccI CCATC 6 cut(s) 80, 131, 161, 191, 485, 662
BciT130I CCWGG 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 468
BfmI CTRYAG 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 692
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 688
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 1 cut(s) 688
BmrI ACTGGG 1 cut(s) 100
BmsI GCATC 1 cut(s) 667
BmuI ACTGGG 1 cut(s) 100
Bpu10I CCTNAGC 1 cut(s) 257
BsaAI YACGTR 1 cut(s) 535
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 3 cut(s) 205, 244, 687
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 3 cut(s) 106, 350, 777
Bse3DI GCAATG 1 cut(s) 641
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 688
BseDI CCNNGG 3 cut(s) 205, 244, 687
BseGI GGATG 7 cut(s) 91, 142, 166, 172, 183, 381, 598
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 641
BseMII CTCAG 2 cut(s) 215, 271
BseNI ACTGG 3 cut(s) 106, 350, 777
BseRI GAGGAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 783
BsiHKCI CYCGRG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 79
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 249
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 783
Bsp143I GATC 1 cut(s) 177
Bsp19I CCATGG 1 cut(s) 205
BspACI CCGC 4 cut(s) 57, 194, 290, 692
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 2 cut(s) 216, 270
BspFNI CGCG 1 cut(s) 290
BspLI GGNNCC 1 cut(s) 338
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 641
BsrI ACTGG 3 cut(s) 106, 350, 777
BssECI CCNNGG 3 cut(s) 205, 244, 687
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 205
Bst2UI CCWGG 1 cut(s) 688
Bst4CI ACNGT 1 cut(s) 506
BstBAI YACGTR 1 cut(s) 535
BstC8I GCNNGC 2 cut(s) 632, 659
BstDEI CTNAG 2 cut(s) 224, 257
BstDSI CCRYGG 1 cut(s) 205
BstENI CCTNNNNNAGG 1 cut(s) 223
BstF5I GGATG 7 cut(s) 91, 142, 166, 172, 183, 381, 598
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 1 cut(s) 180
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 296, 692, 698
BstNI CCWGG 1 cut(s) 688
BstSCI CCNGG 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 584
BstUI CGCG 1 cut(s) 290
BstXI CCANNNNNNTGG 1 cut(s) 206
BsuRI GGCC 1 cut(s) 249
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 7 cut(s) 91, 142, 166, 172, 183, 381, 598
BtsI GCAGTG 2 cut(s) 581, 708
BtsIMutI CAGTG 4 cut(s) 502, 581, 708, 770
Cac8I GCNNGC 2 cut(s) 632, 659
CseI GACGC 1 cut(s) 296
CspCI CAANNNNNGTGG 2 cut(s) 570, 605
CviAII CATG 3 cut(s) 206, 627, 731
CviJI RGCY 9 cut(s) 69, 229, 249, 299, 396, 415, 467, 686, 695
CviKI_1 RGCY 9 cut(s) 69, 229, 249, 299, 396, 415, 467, 686, 695
DdeI CTNAG 2 cut(s) 224, 257
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
DraI TTTAAA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 205
Eco88I CYCGRG 1 cut(s) 155
EcoNI CCTNNNNNAGG 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 686
EcoT14I CCWWGG 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 3 cut(s) 209, 630, 734
FaiI YATR 9 cut(s) 9, 111, 207, 399, 459, 555, 628, 698, 732
FaqI GGGAC 1 cut(s) 104
FatI CATG 3 cut(s) 205, 626, 730
FauI CCCGC 2 cut(s) 50, 201
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 7 cut(s) 98, 149, 170, 173, 179, 388, 605
Fsp4HI GCNGC 1 cut(s) 693
FspBI CTAG 1 cut(s) 468
GluI GCNGC 1 cut(s) 693
HaeIII GGCC 1 cut(s) 249
HgaI GACGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 209, 630, 734
HinfI GANTC 3 cut(s) 100, 367, 577
HphI GGTGA 1 cut(s) 686
Hpy166II GTNNAC 2 cut(s) 214, 532
Hpy188I TCNGA 2 cut(s) 65, 785
Hpy188III TCNNGA 1 cut(s) 364
Hpy8I GTNNAC 2 cut(s) 214, 532
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 7 cut(s) 4, 407, 586, 645, 680, 736, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 692, 698
HpyF3I CTNAG 2 cut(s) 224, 257
HpySE526I ACGT 1 cut(s) 534
Hsp92II CATG 3 cut(s) 209, 630, 734
Kzo9I GATC 1 cut(s) 177
LweI GCATC 1 cut(s) 667
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 534
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 1 cut(s) 760
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 5 cut(s) 17, 35, 351, 460, 737
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 2 cut(s) 33, 350
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 688
MvaI CCWGG 1 cut(s) 688
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 296, 692, 698
NcoI CCATGG 1 cut(s) 205
NdeII GATC 1 cut(s) 177
NlaIII CATG 3 cut(s) 209, 630, 734
NlaIV GGNNCC 1 cut(s) 338
NmeAIII GCCGAG 1 cut(s) 225
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 3 cut(s) 100, 367, 577
PkrI GCNGC 1 cut(s) 694
Ppu21I YACGTR 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 686
PspGI CCWGG 1 cut(s) 686
PspN4I GGNNCC 1 cut(s) 338
PstI CTGCAG 1 cut(s) 588
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 33, 350
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 688
SduI GDGCHC 1 cut(s) 783
SetI ASST 6 cut(s) 301, 417, 469, 537, 548, 676
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 5 cut(s) 17, 35, 351, 460, 737
SsiI CCGC 4 cut(s) 57, 194, 290, 692
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 468
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 537
TaqII GACCGA 1 cut(s) 373
TasI AATT 5 cut(s) 17, 35, 351, 460, 737
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 3 cut(s) 100, 367, 577
Tru1I TTAA 2 cut(s) 33, 350
Tru9I TTAA 2 cut(s) 33, 350
TscAI CASTG 4 cut(s) 509, 588, 708, 777
TspDTI ATGAA 1 cut(s) 615
TspRI CASTG 4 cut(s) 509, 588, 708, 777
XagI CCTNNNNNAGG 1 cut(s) 223
XapI RAATTY 1 cut(s) 17
XcmI CCANNNNNNNNNTGG 1 cut(s) 737
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.