FvH4_3g21492

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000194
Physical Location & Seq
Reverse (-)
14604245 .. 14605776
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21492.t1

Sequence Viewer

Length: 813 bp
ATGAATAGAATTAGCAGCCTGTGCTTGGGTGCTAATATTTGGATCAGTGGTGACTTAGAGGTCAGAAATGCCTTCACCAAGTTTTTTGGTGATTTATACACAACTTCTGGCTCTAGGTGTTGGGGAAATGCTCTAGATAATGTTCATTCCTCTGCTCCGGGACCAGATTCCTTTCCAAGTTTCTTTTACTCGAAATATTGGGAAATTGTGTGTGATAATGTCAACTCTGCTGTTAATTGTTTTTACAGGGATGATTCTCTGTTCTTCCTTAAAGCCACCCCAGCAAACTGCAACTCTCTTAAAGTCATTCTTGACTCCTACTGCACAGCTTCAGGGCAATCAATCAATCTTGGAAAATCCTCTATTTTCGTCTCAGTTTTCACTCCTTTGCAGCTTAAGGAATCAATAGCTTCCACACTTAACATCCCTATTTCAGATAAGCCAGGTATTTATCTTGGTCTCCCTACTCATTGGGGAAACTCAAAGAAGAGTGCTTCGGCCTACATCCGTGAAAGAATTAAGCAGAAATTGGAGGGTTGGAAAGCTAATGTTCTCTCACAAGCTGGAAGGGAGGTGCTCATCAAAGCGGTGGCTATGGCAATCCCAGCCTACCCTATGTCCATTTTTCTTTTACCAGTTACTTTGTGCAAAGCTTTTAATTCTGACATCTCAATTTTCTGGTGGGGTTTCTCGGACTCAAAGGACAAGCTTCATTGGAAGGCTTGGGACCCGTTGTGCACAAGCAAGTTAGAGGGTGGCATTGGCTTTAAAGATCTTCACACTTACAACAAGGCTTTGTTGACTAAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

271

Amino Acids

30.0

Weight (kDa)

8.93

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 59
AciI CCGC 1 cut(s) 587
AclWI GGATC 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 25
AflII CTTAAG 1 cut(s) 395
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 7 cut(s) 329, 394, 410, 545, 563, 653, 709
AluI AGCT 7 cut(s) 329, 394, 410, 545, 563, 653, 709
Alw21I GWGCWC 2 cut(s) 579, 740
Alw26I GTCTC 2 cut(s) 376, 464
Alw44I GTGCAC 1 cut(s) 736
AlwI GGATC 1 cut(s) 50
AoxI GGCC 1 cut(s) 498
ApaLI GTGCAC 1 cut(s) 736
ApeKI GCWGC 2 cut(s) 15, 391
AspS9I GGNCC 2 cut(s) 161, 727
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 3 cut(s) 62, 67, 101
AvaII GGWCC 2 cut(s) 161, 727
BaeGI GKGCMC 1 cut(s) 740
Bbv12I GWGCWC 2 cut(s) 579, 740
BbvI GCAGC 2 cut(s) 27, 403
BciT130I CCWGG 1 cut(s) 444
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 2 cut(s) 376, 464
BfaI CTAG 2 cut(s) 114, 134
BfrI CTTAAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 772
BisI GCNGC 2 cut(s) 16, 392
BlsI GCNGC 2 cut(s) 17, 393
Bme1390I CCNGG 2 cut(s) 159, 444
Bme18I GGWCC 2 cut(s) 161, 727
BmgT120I GGNCC 2 cut(s) 161, 727
BmiI GGNNCC 3 cut(s) 162, 728, 729
BmrFI CCNGG 2 cut(s) 159, 444
BpuMI CCSGG 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 464
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 1 cut(s) 444
BseGI GGATG 3 cut(s) 256, 423, 504
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 635
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 2 cut(s) 27, 403
BseYI CCCAGC 2 cut(s) 280, 604
BsgI GTGCAG 1 cut(s) 307
BshFI GGCC 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 579, 740
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 2 cut(s) 174, 740
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 2 cut(s) 376, 464
BsmBI CGTCTC 1 cut(s) 376
BsmFI GGGAC 2 cut(s) 174, 740
BsnI GGCC 1 cut(s) 500
Bso31I GGTCTC 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 579, 740
Bsp143I GATC 2 cut(s) 42, 772
BspACI CCGC 1 cut(s) 587
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 1 cut(s) 386
BspLI GGNNCC 3 cut(s) 162, 728, 729
BspPI GGATC 1 cut(s) 50
BspTI CTTAAG 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 464
BsrI ACTGG 1 cut(s) 635
BssMI GATC 2 cut(s) 42, 772
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 1 cut(s) 810
Bst6I CTCTTC 1 cut(s) 482
BstAFI CTTAAG 1 cut(s) 395
BstAPI GCANNNNNTGC 1 cut(s) 21
BstDEI CTNAG 2 cut(s) 55, 373
BstF5I GGATG 3 cut(s) 256, 423, 504
BstKTI GATC 2 cut(s) 45, 775
BstMAI GTCTC 2 cut(s) 376, 464
BstMBI GATC 2 cut(s) 42, 772
BstMWI GCNNNNNNNGC 3 cut(s) 21, 281, 605
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 2 cut(s) 157, 442
BstSLI GKGCMC 1 cut(s) 740
BstV1I GCAGC 2 cut(s) 27, 403
BstX2I RGATCY 1 cut(s) 772
BstYI RGATCY 1 cut(s) 772
BsuRI GGCC 1 cut(s) 500
BtsCI GGATG 3 cut(s) 256, 423, 504
BtsIMutI CAGTG 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 161, 727
DdeI CTNAG 2 cut(s) 55, 373
DpnI GATC 2 cut(s) 44, 774
DpnII GATC 2 cut(s) 42, 772
DraI TTTAAA 1 cut(s) 769
DrdI GACNNNNNNGTC 1 cut(s) 59
DseDI GACNNNNNNGTC 1 cut(s) 59
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco31I GGTCTC 1 cut(s) 464
Eco47I GGWCC 2 cut(s) 161, 727
Eco57I CTGAAG 1 cut(s) 315
EcoO109I RGGNCCY 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 442
Esp3I CGTCTC 1 cut(s) 376
FaiI YATR 3 cut(s) 97, 596, 617
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FaqI GGGAC 2 cut(s) 174, 740
Fnu4HI GCNGC 2 cut(s) 16, 392
FokI GGATG 3 cut(s) 263, 410, 491
Fsp4HI GCNGC 2 cut(s) 16, 392
FspBI CTAG 2 cut(s) 114, 134
GluI GCNGC 2 cut(s) 16, 392
GsaI CCCAGC 2 cut(s) 284, 608
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 158
HincII GTYRAC 2 cut(s) 223, 801
HindII GTYRAC 2 cut(s) 223, 801
HindIII AAGCTT 2 cut(s) 651, 707
HinfI GANTC 5 cut(s) 167, 254, 314, 401, 695
HpaII CCGG 1 cut(s) 158
HphI GGTGA 3 cut(s) 62, 67, 101
Hpy166II GTNNAC 3 cut(s) 223, 738, 801
Hpy188I TCNGA 4 cut(s) 65, 436, 664, 694
Hpy188III TCNNGA 2 cut(s) 134, 311
Hpy8I GTNNAC 3 cut(s) 223, 738, 801
HpyAV CCTTC 3 cut(s) 82, 561, 712
HpyCH4III ACNGT 1 cut(s) 810
HpyCH4V TGCA 5 cut(s) 291, 324, 391, 648, 738
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 281, 605
HpyF3I CTNAG 2 cut(s) 55, 373
KflI GGGWCCC 1 cut(s) 727
Kzo9I GATC 2 cut(s) 42, 772
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 2 cut(s) 27, 403
MaeI CTAG 2 cut(s) 114, 134
MaeIII GTNAC 2 cut(s) 50, 637
MalI GATC 2 cut(s) 44, 774
MboI GATC 2 cut(s) 42, 772
MboII GAAGA 3 cut(s) 256, 499, 767
MflI RGATCY 1 cut(s) 772
MhlI GDGCHC 2 cut(s) 579, 740
MluCI AATT 7 cut(s) 9, 204, 235, 516, 527, 658, 672
MlyI GAGTC 2 cut(s) 308, 689
MmeI TCCRAC 1 cut(s) 518
MnlI CCTC 6 cut(s) 52, 160, 370, 526, 565, 745
MseI TTAA 8 cut(s) 234, 270, 300, 396, 420, 519, 657, 768
MspCI CTTAAG 1 cut(s) 395
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 2 cut(s) 159, 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 21, 281, 605
NciI CCSGG 1 cut(s) 159
NdeII GATC 2 cut(s) 42, 772
NlaIV GGNNCC 3 cut(s) 162, 728, 729
NmuCI GTSAC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 167, 254, 401
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 2 cut(s) 17, 393
PleI GAGTC 2 cut(s) 308, 689
PpsI GAGTC 2 cut(s) 308, 689
PpuMI RGGWCCY 1 cut(s) 727
Psp5II RGGWCCY 1 cut(s) 727
Psp6I CCWGG 1 cut(s) 442
PspFI CCCAGC 2 cut(s) 280, 604
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 3 cut(s) 162, 728, 729
PspPI GGNCC 2 cut(s) 161, 727
PspPPI RGGWCCY 1 cut(s) 727
PsuI RGATCY 1 cut(s) 772
SaqAI TTAA 8 cut(s) 234, 270, 300, 396, 420, 519, 657, 768
SatI GCNGC 2 cut(s) 16, 392
Sau3AI GATC 2 cut(s) 42, 772
Sau96I GGNCC 2 cut(s) 161, 727
SchI GAGTC 2 cut(s) 308, 689
ScrFI CCNGG 2 cut(s) 159, 444
SduI GDGCHC 2 cut(s) 579, 740
SinI GGWCC 2 cut(s) 161, 727
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 7 cut(s) 9, 204, 235, 516, 527, 658, 672
SsiI CCGC 1 cut(s) 587
SspI AATATT 2 cut(s) 37, 197
SspMI CTAG 2 cut(s) 114, 134
StyD4I CCNGG 2 cut(s) 157, 442
TaaI ACNGT 1 cut(s) 810
TaqI TCGA 1 cut(s) 191
TasI AATT 7 cut(s) 9, 204, 235, 516, 527, 658, 672
TfiI GAWTC 3 cut(s) 167, 254, 401
Tru1I TTAA 8 cut(s) 234, 270, 300, 396, 420, 519, 657, 768
Tru9I TTAA 8 cut(s) 234, 270, 300, 396, 420, 519, 657, 768
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 15, 391
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 17, 134, 701
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 736
VpaK11BI GGWCC 2 cut(s) 161, 727
XbaI TCTAGA 1 cut(s) 133
XspI CTAG 2 cut(s) 114, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.