Rmu_sc0006380.1_g000020

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006380.1
OG0000194
Physical Location & Seq
Reverse (-)
106495 .. 107095
601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006380.1_g000020.1.cds

Sequence Viewer

Length: 408 bp
atgaaagaagtgatgaactcgggttcttatttgggcctcccaatgatttggggtcggtcaaagatctcagctttgaattatgtaaaagagagaattgataaaacaaaaaattatggctggaaccaatcaaccctttcacaggcggggaaggagatcatgattaaagtggtcgcgcttgctattcctacttaccctataggtgtcttcaagtttcccaccacgatatgtaacaagatttcctcctcccttgccaatttcacgtgggggaatagctcatctaagtcggttcgaggaccgtccccttcttgggcacggtctagtctgctggagggcaaaaccctcctttcagatggctctctttggcagattggttttggggatgatgttaacctttggcgtgacaactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

135

Amino Acids

14.94

Weight (kDa)

9.72

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 143
AcvI CACGTG 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 139, 306, 307
AgsI TTSAA 2 cut(s) 76, 208
AluBI AGCT 2 cut(s) 71, 273
AluI AGCT 2 cut(s) 71, 273
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 34, 293
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 313
BbrPI CACGTG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 196
BccI CCATC 1 cut(s) 344
BfaI CTAG 2 cut(s) 318, 406
BfmI CTRYAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 34, 293
BmiI GGNNCC 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 306, 307
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 139, 306, 307
BseMII CTCAG 1 cut(s) 81
BseRI GAGGAG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 36
BsiHKCI CYCGRG 1 cut(s) 19
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 139, 306, 307
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 2 cut(s) 63, 153
BspACI CCGC 1 cut(s) 143
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 156
BspLI GGNNCC 1 cut(s) 122
BssMI GATC 2 cut(s) 63, 153
Bst4CI ACNGT 2 cut(s) 297, 315
BstBAI YACGTR 1 cut(s) 261
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 67, 279
BstENI CCTNNNNNAGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 385
BstFNI CGCG 1 cut(s) 173
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 2 cut(s) 66, 156
BstMBI GATC 2 cut(s) 63, 153
BstSFI CTRYAG 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 313
BstUI CGCG 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 63
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 156
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 34, 293
CviAII CATG 1 cut(s) 157
CviJI RGCY 5 cut(s) 36, 71, 117, 273, 354
CviKI_1 RGCY 5 cut(s) 36, 71, 117, 273, 354
DdeI CTNAG 2 cut(s) 67, 279
DpnI GATC 2 cut(s) 65, 155
DpnII GATC 2 cut(s) 63, 153
Eco47I GGWCC 1 cut(s) 293
Eco72I CACGTG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 19
EcoNI CCTNNNNNAGG 1 cut(s) 137
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 81, 114, 158, 197, 226
FaqI GGGAC 1 cut(s) 283
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 136
FokI GGATG 1 cut(s) 392
FspBI CTAG 2 cut(s) 318, 406
GlaI GCGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 36
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HpaI GTTAAC 1 cut(s) 388
Hpy166II GTNNAC 1 cut(s) 388
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 142, 312
HpyCH4III ACNGT 2 cut(s) 297, 315
HpyCH4IV ACGT 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 67, 279
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 1 cut(s) 173
KspAI GTTAAC 1 cut(s) 388
Kzo9I GATC 2 cut(s) 63, 153
LpnPI CCDG 3 cut(s) 103, 125, 311
MaeI CTAG 2 cut(s) 318, 406
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 2 cut(s) 227, 398
MalI GATC 2 cut(s) 65, 155
MboI GATC 2 cut(s) 63, 153
MboII GAAGA 1 cut(s) 196
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 4 cut(s) 76, 93, 109, 253
MnlI CCTC 6 cut(s) 47, 250, 253, 284, 322, 350
MseI TTAA 2 cut(s) 162, 387
MvnI CGCG 1 cut(s) 173
NdeII GATC 2 cut(s) 63, 153
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 398
PagI TCATGA 1 cut(s) 156
PmaCI CACGTG 1 cut(s) 261
PmlI CACGTG 1 cut(s) 261
Ppu21I YACGTR 1 cut(s) 261
PspCI CACGTG 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 2 cut(s) 34, 293
PsuI RGATCY 1 cut(s) 63
SaqAI TTAA 2 cut(s) 162, 387
Sau3AI GATC 2 cut(s) 63, 153
Sau96I GGNCC 2 cut(s) 34, 293
SduI GDGCHC 1 cut(s) 313
SetI ASST 5 cut(s) 73, 202, 263, 275, 393
SfcI CTRYAG 1 cut(s) 195
SinI GGWCC 1 cut(s) 293
Sse9I AATT 4 cut(s) 76, 93, 109, 253
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 318, 406
TaaI ACNGT 2 cut(s) 297, 315
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 289
TaqII GACCGA 1 cut(s) 45
TasI AATT 4 cut(s) 76, 93, 109, 253
Tru1I TTAA 2 cut(s) 162, 387
Tru9I TTAA 2 cut(s) 162, 387
TseFI GTSAC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 2 cut(s) 17, 29
VpaK11BI GGWCC 1 cut(s) 293
XagI CCTNNNNNAGG 1 cut(s) 137
XspI CTAG 2 cut(s) 318, 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.