Rmu_sc0002902.1_g000055

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002902.1
OG0000194
Physical Location & Seq
Reverse (-)
284993 .. 285559
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002902.1_g000055.1.cds

Sequence Viewer

Length: 567 bp
atgggtttccacgaccttcatcactttaacttggcactaatcgctaagcaagcttggcgtctaatgcgggatcctgggtctatgtgggcaagagtgctcaaggctcactactacccaaattgctcatttgcaggggcaaccaagggtcacagagcttcctgggggtggtctagcttgttggaagcccgggattttgtcacaaaaaacagttgctggcaggttatcacaggttcctcaatcaatatttggtcagactgctggttaccgccccataattccaaccatccccccatgacaggccctattttaaccaccggacaaattcccactgatgctccaacaatggtggagcaaatcatcgacaaggacacctattcctggcatctagatagcatcattcatctcatccaaccttcagaggtcaacagaatcatatttgttcctattggcaggggagagggagctgacagattaatttggaccctaacaaagagtgggatttactcggttaggaacatgtctacgctagatactgcaaacacacctgtggagggatgtattttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

188

Amino Acids

21.17

Weight (kDa)

7.12

Isoelectric Point (pI)

29.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccI GTMKAC 1 cut(s) 521
AciI CCGC 2 cut(s) 67, 266
AclWI GGATC 2 cut(s) 65, 78
AcsI RAATTY 1 cut(s) 321
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 58
AfiI CCNNNNNNNGG 4 cut(s) 165, 296, 378, 551
AflIII ACRYGT 1 cut(s) 516
AjnI CCWGG 3 cut(s) 73, 158, 377
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 4 cut(s) 53, 155, 174, 464
AluI AGCT 4 cut(s) 53, 155, 174, 464
Alw21I GWGCWC 1 cut(s) 99
AlwI GGATC 2 cut(s) 65, 78
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 321
AseI ATTAAT 1 cut(s) 473
AspS9I GGNCC 2 cut(s) 299, 480
AsuC2I CCSGG 2 cut(s) 187, 188
AvaI CYCGRG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 480
BamHI GGATCC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 1 cut(s) 291
BciT130I CCWGG 3 cut(s) 75, 160, 379
BcnI CCSGG 2 cut(s) 187, 188
BfaI CTAG 3 cut(s) 171, 386, 527
BfuAI ACCTGC 1 cut(s) 208
BlpI GCTNAGC 1 cut(s) 45
Bme1390I CCNGG 5 cut(s) 75, 160, 187, 188, 379
Bme18I GGWCC 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 2 cut(s) 299, 480
BmiI GGNNCC 3 cut(s) 72, 232, 482
BmrFI CCNGG 5 cut(s) 75, 160, 187, 188, 379
BmsI GCATC 3 cut(s) 322, 391, 402
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 187, 188
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 4 cut(s) 74, 141, 159, 186
BsaWI WCCGGW 1 cut(s) 314
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 296, 378, 551
BseBI CCWGG 3 cut(s) 75, 160, 379
BseDI CCNNGG 4 cut(s) 74, 141, 159, 186
BseGI GGATG 3 cut(s) 283, 405, 560
BseLI CCNNNNNNNGG 4 cut(s) 165, 296, 378, 551
BshFI GGCC 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 2 cut(s) 187, 315
BslI CCNNNNNNNGG 4 cut(s) 165, 296, 378, 551
BsnI GGCC 1 cut(s) 300
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 1 cut(s) 70
Bsp1720I GCTNAGC 1 cut(s) 45
BspACI CCGC 2 cut(s) 67, 266
BspANI GGCC 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 72, 232, 482
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 2 cut(s) 65, 78
BssECI CCNNGG 4 cut(s) 74, 141, 159, 186
BssMI GATC 1 cut(s) 70
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 3 cut(s) 75, 160, 379
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 58
BstC8I GCNNGC 2 cut(s) 51, 215
BstDEI CTNAG 1 cut(s) 45
BstEII GGTNACC 1 cut(s) 261
BstF5I GGATG 3 cut(s) 283, 405, 560
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 4 cut(s) 41, 50, 55, 64
BstNI CCWGG 3 cut(s) 75, 160, 379
BstNSI RCATGY 1 cut(s) 520
BstPI GGTNACC 1 cut(s) 261
BstSCI CCNGG 5 cut(s) 73, 158, 185, 186, 377
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 3 cut(s) 283, 405, 560
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 51, 215
CaiI CAGNNNCTG 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 299, 480
Cfr9I CCCGGG 1 cut(s) 186
CseI GACGC 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 2 cut(s) 292, 517
CviJI RGCY 7 cut(s) 53, 104, 155, 174, 185, 300, 464
CviKI_1 RGCY 7 cut(s) 53, 104, 155, 174, 185, 300, 464
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 480
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 299
EcoO65I GGTNACC 1 cut(s) 261
EcoRII CCWGG 3 cut(s) 73, 158, 377
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 295, 520
FaiI YATR 5 cut(s) 83, 273, 293, 434, 518
FatI CATG 2 cut(s) 291, 516
FauI CCCGC 1 cut(s) 60
FblI GTMKAC 1 cut(s) 521
FokI GGATG 2 cut(s) 270, 392
FspBI CTAG 3 cut(s) 171, 386, 527
HaeIII GGCC 1 cut(s) 300
HapII CCGG 2 cut(s) 187, 315
HgaI GACGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 2 cut(s) 295, 520
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 1 cut(s) 429
HpaII CCGG 2 cut(s) 187, 315
Hpy166II GTNNAC 2 cut(s) 424, 522
Hpy188I TCNGA 2 cut(s) 253, 418
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 2 cut(s) 424, 522
HpyAV CCTTC 2 cut(s) 26, 423
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 131, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 50, 55, 64
HpyF3I CTNAG 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 2 cut(s) 295, 520
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 3 cut(s) 340, 349, 461
LweI GCATC 3 cut(s) 322, 391, 402
MaeI CTAG 3 cut(s) 171, 386, 527
MaeIII GTNAC 3 cut(s) 146, 196, 261
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 4 cut(s) 118, 274, 321, 474
MmeI TCCRAC 4 cut(s) 159, 303, 362, 433
MnlI CCTC 4 cut(s) 244, 412, 451, 544
MseI TTAA 3 cut(s) 27, 308, 473
MslI CAYNNNNRTG 1 cut(s) 545
MspI CCGG 2 cut(s) 187, 315
MspR9I CCNGG 5 cut(s) 75, 160, 187, 188, 379
MvaI CCWGG 3 cut(s) 75, 160, 379
MwoI GCNNNNNNNGC 4 cut(s) 41, 50, 55, 64
NciI CCSGG 2 cut(s) 187, 188
NdeII GATC 1 cut(s) 70
NlaIII CATG 2 cut(s) 295, 520
NlaIV GGNNCC 3 cut(s) 72, 232, 482
NmuCI GTSAC 2 cut(s) 146, 196
NspI RCATGY 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 545
PciI ACATGT 1 cut(s) 516
PfeI GAWTC 1 cut(s) 429
PscI ACATGT 1 cut(s) 516
PshBI ATTAAT 1 cut(s) 473
Psp6I CCWGG 3 cut(s) 73, 158, 377
PspEI GGTNACC 1 cut(s) 261
PspGI CCWGG 3 cut(s) 73, 158, 377
PspN4I GGNNCC 3 cut(s) 72, 232, 482
PspPI GGNCC 2 cut(s) 299, 480
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 70
RseI CAYNNNNRTG 1 cut(s) 545
SaqAI TTAA 3 cut(s) 27, 308, 473
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 2 cut(s) 299, 480
ScrFI CCNGG 5 cut(s) 75, 160, 187, 188, 379
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 3 cut(s) 322, 391, 402
SinI GGWCC 1 cut(s) 480
SmaI CCCGGG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 4 cut(s) 118, 274, 321, 474
SsiI CCGC 2 cut(s) 67, 266
SspI AATATT 1 cut(s) 244
SspMI CTAG 3 cut(s) 171, 386, 527
StyD4I CCNGG 5 cut(s) 73, 158, 185, 186, 377
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 360
TasI AATT 4 cut(s) 118, 274, 321, 474
TfiI GAWTC 1 cut(s) 429
Tru1I TTAA 3 cut(s) 27, 308, 473
Tru9I TTAA 3 cut(s) 27, 308, 473
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 2 cut(s) 146, 196
Tsp45I GTSAC 2 cut(s) 146, 196
TspDTI ATGAA 2 cut(s) 8, 389
TspMI CCCGGG 1 cut(s) 186
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 480
VspI ATTAAT 1 cut(s) 473
XapI RAATTY 1 cut(s) 321
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 520
XmaI CCCGGG 1 cut(s) 186
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 3 cut(s) 171, 386, 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.