Rh4AG106100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000194
Physical Location & Seq
Reverse (-)
22846717 .. 22847022
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG106100.1

Sequence Viewer

Length: 306 bp
ATGATTGACCACATTGAACCTTTCCTGTCTATTGAGGATGCTAAAGCAATTAAGTCAATTCCTTTGGGTGATCTCAACAAAGATGATTCTCTTATCTGGCCAAGAGAGAAAACAGGTAAATATAAGGTGAAATCTGTCTACCACTGCTTAACTTCCAAGCTTGTAGTTCCTGAAGTCGGTAAGCCCTCGTCCTCTCACCAAATTGATAGTAAAGTTTGGAAAGTGATTTGGAACTCTGGTCTACTCCCGAAAATCTCAAACTTCCTCTGGAGAGCTATTTCTAATGCATTCCCCCTGCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

101

Amino Acids

11.46

Weight (kDa)

9.3

Isoelectric Point (pI)

45.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 138, 241
AcoI YGGCCR 1 cut(s) 98
AcuI CTGAAG 2 cut(s) 192, 284
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 160, 275
AluI AGCT 2 cut(s) 160, 275
AoxI GGCC 1 cut(s) 98
AsuHPI GGTGA 3 cut(s) 80, 139, 188
BalI TGGCCA 1 cut(s) 100
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 176
BshFI GGCC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 176
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 1 cut(s) 100
BssMI GATC 1 cut(s) 70
BstF5I GGATG 1 cut(s) 43
BstKTI GATC 1 cut(s) 73
BstMBI GATC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 43
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 142
CviJI RGCY 4 cut(s) 100, 160, 184, 275
CviKI_1 RGCY 4 cut(s) 100, 160, 184, 275
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 98
Eco57I CTGAAG 2 cut(s) 192, 284
EcoT22I ATGCAT 1 cut(s) 289
FaiI YATR 1 cut(s) 123
FblI GTMKAC 2 cut(s) 138, 241
FokI GGATG 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 289
HaeIII GGCC 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 1 cut(s) 86
HphI GGTGA 3 cut(s) 80, 139, 188
Hpy166II GTNNAC 2 cut(s) 139, 242
Hpy188III TCNNGA 3 cut(s) 170, 247, 268
Hpy8I GTNNAC 2 cut(s) 139, 242
HpyCH4V TGCA 1 cut(s) 287
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 6 cut(s) 38, 82, 99, 183, 222, 253
LweI GCATC 1 cut(s) 28
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 100
MluCI AATT 3 cut(s) 48, 57, 201
MluNI TGGCCA 1 cut(s) 100
MnlI CCTC 4 cut(s) 28, 196, 202, 275
Mox20I TGGCCA 1 cut(s) 100
Mph1103I ATGCAT 1 cut(s) 289
MscI TGGCCA 1 cut(s) 100
MseI TTAA 2 cut(s) 51, 149
Msp20I TGGCCA 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 287
NdeII GATC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 289
PctI GAATGC 1 cut(s) 287
PfeI GAWTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 51, 149
Sau3AI GATC 1 cut(s) 70
SetI ASST 5 cut(s) 22, 118, 129, 162, 277
SfaNI GCATC 1 cut(s) 28
Sse9I AATT 3 cut(s) 48, 57, 201
TasI AATT 3 cut(s) 48, 57, 201
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 2 cut(s) 51, 149
Tru9I TTAA 2 cut(s) 51, 149
TscAI CASTG 1 cut(s) 149
TspRI CASTG 1 cut(s) 149
XmiI GTMKAC 2 cut(s) 138, 241
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.