Rw6G010440

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000194
Physical Location & Seq
Reverse (-)
18055805 .. 18058324
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G010440.1

Sequence Viewer

Length: 2250 bp
ATGCCCGATCTTATATCTGAAAACCAATCTGCCTTTGTCACTGGGAGACAGATACAGGACAATATTTTGGTGGCCCATGAGATGTTTCATCATCTTAAGCTCCTGAAGGGTGCACAAGGTGGAGAGTTTGCCTTGAAATTGGACATGAACAAGGCTTATGATCGTGTGGATTGGGATTTCCTTCGTTTGGTCATGCTTAAAATGGGTTTTCACCCCACTTGGGTAAAGTTAGTAATGTCCTGTGTCACTACGGCATCTCTTGCCATTATTGTCAACGGTGCTCCGGGAAAAAAATTCAAGCCAACTAGAGGCCTTCGACAGGGAGATCCTCTCTCTCCTTTTCTTTTCCTTTTCATTAATGATGTTCTGTCATCAATGATAAGGAAAATCTGCTCTAACAATCTTCTTGATGCATTAAGGATTGGTGTTAATGGTCCTTTGGTGAGTCACCTGTTCTTCGCTGATGACTCCATAAACTGCGAGGTCCTTCTTGACACTCTCAATAGCTACTGCTCTGCCTCAGGTCAGTCGGTAAATCACCAAAAATCGTCACTATTCTTCAGCCCAAACACCTCTCCGGATGTGGTTCGGCACATTTCCTCTATTCTTGGCATGGGGGCTGTTTTAGACCCGGGAAGGTATTTAGGGCTACCTACAATCTGGGGACGATCAAAGGTTTCGGCTCTCTCTTATGTTAAAGATTCAATTGAGAAAAAGATCTCGGGTTGGCATCAGTCCTCCTTGTCCCATGCTGGAAAGGAAACTTTGATAAAATCAGTCGCCCTAGCTGTACCAGCCTACCCTATGACGGTCTTCAAATTCCCTGCCTCTCTCTGCAATCAGATCAACTCTTCTCTGGCCAACTTCTGGTGGGGAACCTCGGCAACTAAAGGCATTCACTGGAAGAGTTGGACCCGACTTGGCCTATCCAAGCCTGATGGAGGGATAGGGTTCCGTAACATTGCGGATTTTAACTTGGCTCTGCTAGCTAAACAAGCTTGGCGGTTACACTCCAATCCCGATGCTCTGTGGGTGAGGGTCCTAAAGAATCGCTATTTTCCAAACTCGTCCTTTTGGGAAGCGGCAAAGGGTTCTTCTCCATCATGGGCTTGGTCTAGTATTCTTGAAGGTCGGTCTCTTGCTTCGGCTGGTTCTTTATGGTGTATTGGGTCGGGAACCTCTGTCAACCTTTGGAAGGACAACTGGATCCCCAATCTGCCTAATTTCAACTTGAGAACTCACCCCACACCCAATGATTCAAATCGACTGGTGGCTTCTATTATTGACAGAGACACTCATACTTGGAATCTCACCACTCTGCAATCTGCCCTCCCGGTAGAGACTATCAATGCCATTCAAGCTACATCTTTTGGCTCCTCTACTGATCCGGACCGCTTAATTTGGACTGCCAATCCAACGGGCACTTACACGGTTCATTCTGGATATAACTTTCTGGTCAAGTCCTCCATTCCAGCTCTATCTGCCCACCCTCATCAGTCTCATATTGTTTCTCCGCTGGTCTGGAAGTGGATCTGGTCAGTACGCGCTCCCCCCAAGGTTAAACACTTTTTATGGCGGGCTACATCTAATGCTCTAGCAACAAATCAAAATCGTCACCACAGGCATCTATCTCCTTCTCCGATGTGCACCTTCTGCAATTCCCATCCGGAAACTACTGAGCACATCTTGTTCTTATGCCCGTGGACTCTCCAGGCCTGGTTCTCTCACCCGTTCTCCTACCAAGTCAATCAACAGTCTATCACCACTTTGGATGCTTGGCTTCTGGGCATTTTTAGAAAGGATGCTTGGGATTCTTCTTTGAACTCTGGTATTGCGGCAATTGCTCGGGATTCTTCCGGAAACCTTATTGGTGGCTCTGCTAGAAGCACCCTTGCTTCTTCTCCTCTGGCTGCGGAAGCTCAAGCTATTTCTCTTGGGCTCGAGCTAGCTATCTCTCTCTCCCTTTCTTCTTTTCAGCTTGAATCAGACTCACTTGTGCTGATTTCGGCCCTTTTAAACCCACTTTCGATGGTGGACTGGACTGCTTCGAACATCATAGCACATATTCGTGCTCAAGGTGGTCTTTTCCATCGTGTTAACTGGCTCTGGTCCAGTAGATCAGCCAATGCGGCAGCAGACCTGGTTGCGTCGCTGGCTAAGCGCAGGGTGTGCCCGGATGATTGGCCCTCCAATCCTCCTCCCTCCCTAATGCGAATCCTTCTTTTTGATGCTGTAACAGATCCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

749

Amino Acids

82.6

Weight (kDa)

9.33

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 4 - 216 2.2e-17 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 476 - 573 1.1e-17 zinc-binding in reverse transcriptase
RVT_3 PF13456 605 - 718 1e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 867
AccII CGCG 1 cut(s) 1545
AccIII TCCGGA 4 cut(s) 577, 1387, 1666, 1856
AciI CCGC 9 cut(s) 965, 1003, 1082, 1393, 1514, 1576, 1835, 1913, 2129
AclWI GGATC 6 cut(s) 320, 1201, 1214, 1379, 1538, 2234
AcoI YGGCCR 1 cut(s) 858
AcsI RAATTY 2 cut(s) 293, 818
AcuI CTGAAG 2 cut(s) 125, 544
AdeI CACNNNGTG 1 cut(s) 119
AfaI GTAC 2 cut(s) 792, 1542
AfiI CCNNNNNNNGG 8 cut(s) 187, 220, 308, 319, 808, 867, 941, 1195
AflII CTTAAG 1 cut(s) 95
AjnI CCWGG 3 cut(s) 1710, 1715, 2139
AjuI GAANNNNNNNTTGG 2 cut(s) 1789, 1821
Alw21I GWGCWC 5 cut(s) 115, 283, 1649, 1683, 2074
Alw26I GTCTC 5 cut(s) 40, 1140, 1284, 1334, 1503
Alw44I GTGCAC 2 cut(s) 111, 1645
AlwI GGATC 6 cut(s) 320, 1201, 1214, 1379, 1538, 2234
Ama87I CYCGRG 4 cut(s) 631, 721, 1845, 1940
Aor13HI TCCGGA 4 cut(s) 577, 1387, 1666, 1856
AoxI GGCC 7 cut(s) 72, 310, 858, 922, 1713, 2007, 2183
ApaLI GTGCAC 2 cut(s) 111, 1645
ApeKI GCWGC 2 cut(s) 1910, 2132
ApoI RAATTY 2 cut(s) 293, 818
AseI ATTAAT 1 cut(s) 357
AspLEI GCGC 2 cut(s) 1547, 2163
AspS9I GGNCC 9 cut(s) 73, 434, 484, 912, 1039, 1390, 2008, 2109, 2184
AsuC2I CCSGG 5 cut(s) 285, 632, 633, 1334, 2174
AsuII TTCGAA 1 cut(s) 2048
AsuNHI GCTAGC 2 cut(s) 985, 1945
AvaI CYCGRG 4 cut(s) 631, 721, 1845, 1940
AvaII GGWCC 6 cut(s) 434, 484, 912, 1039, 1390, 2109
AxyI CCTNAGG 1 cut(s) 520
BaeGI GKGCMC 4 cut(s) 115, 1424, 1649, 2174
BalI TGGCCA 1 cut(s) 860
BamHI GGATCC 1 cut(s) 1206
BanII GRGCYC 1 cut(s) 1941
BbsI GAAGAC 1 cut(s) 805
Bbv12I GWGCWC 5 cut(s) 115, 283, 1649, 1683, 2074
BbvI GCAGC 2 cut(s) 1897, 2144
BccI CCATC 5 cut(s) 932, 1108, 1671, 2023, 2097
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 3 cut(s) 1712, 1717, 2141
BcnI CCSGG 5 cut(s) 285, 632, 633, 1334, 2174
BcoDI GTCTC 5 cut(s) 40, 1140, 1284, 1334, 1503
BfaI CTAG 7 cut(s) 306, 785, 986, 1116, 1595, 1881, 1946
BfrI CTTAAG 1 cut(s) 95
BglI GCCNNNNNGGC 1 cut(s) 2129
BglII AGATCT 1 cut(s) 717
BisI GCNGC 5 cut(s) 1083, 1836, 1911, 2130, 2133
BlpI GCTNAGC 1 cut(s) 2157
BlsI GCNGC 5 cut(s) 1084, 1837, 1912, 2131, 2134
Bme1390I CCNGG 8 cut(s) 285, 632, 633, 1334, 1712, 1717, 2141, 2174
Bme18I GGWCC 6 cut(s) 434, 484, 912, 1039, 1390, 2109
BmeT110I CYCGRG 4 cut(s) 631, 721, 1845, 1940
BmgT120I GGNCC 9 cut(s) 73, 434, 484, 912, 1039, 1390, 2008, 2109, 2184
BmiI GGNNCC 7 cut(s) 877, 914, 953, 1040, 1177, 1208, 1375
BmrFI CCNGG 8 cut(s) 285, 632, 633, 1334, 1712, 1717, 2141, 2174
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 8 cut(s) 263, 400, 739, 1012, 1633, 1762, 1792, 2218
BmtI GCTAGC 2 cut(s) 989, 1949
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 805
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 1 cut(s) 1694
Bpu1102I GCTNAGC 1 cut(s) 2157
Bpu14I TTCGAA 1 cut(s) 2048
BpuEI CTTGAG 3 cut(s) 1252, 1905, 2058
BpuMI CCSGG 5 cut(s) 285, 632, 633, 1334, 2174
BsaBI GATNNNNATC 1 cut(s) 1260
BsaI GGTCTC 1 cut(s) 1140
BsaJI CCNNGG 4 cut(s) 631, 879, 1554, 1700
BsaWI WCCGGW 4 cut(s) 577, 1387, 1666, 1856
BsaXI ACNNNNNCTCC 2 cut(s) 1718, 1748
Bsc4I CCNNNNNNNGG 8 cut(s) 187, 220, 308, 319, 808, 867, 941, 1195
Bse1I ACTGG 7 cut(s) 46, 905, 1208, 1272, 2042, 2105, 2112
Bse21I CCTNAGG 1 cut(s) 520
Bse3DI GCAATG 1 cut(s) 960
Bse8I GATNNNNATC 1 cut(s) 1260
BseAI TCCGGA 4 cut(s) 577, 1387, 1666, 1856
BseBI CCWGG 3 cut(s) 1712, 1717, 2141
BseDI CCNNGG 4 cut(s) 631, 879, 1554, 1700
BseGI GGATG 5 cut(s) 586, 1663, 1777, 1807, 2182
BseJI GATNNNNATC 1 cut(s) 1260
BseLI CCNNNNNNNGG 8 cut(s) 187, 220, 308, 319, 808, 867, 941, 1195
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 2 cut(s) 534, 1668
BseNI ACTGG 7 cut(s) 46, 905, 1208, 1272, 2042, 2105, 2112
BseRI GAGGAG 3 cut(s) 1366, 1893, 2187
BseSI GKGCMC 4 cut(s) 115, 1424, 1649, 2174
BseXI GCAGC 2 cut(s) 1897, 2144
Bsh1236I CGCG 1 cut(s) 1545
BshFI GGCC 7 cut(s) 74, 312, 860, 924, 1715, 2009, 2185
BsiHKAI GWGCWC 5 cut(s) 115, 283, 1649, 1683, 2074
BsiHKCI CYCGRG 4 cut(s) 631, 721, 1845, 1940
BsiSI CCGG 8 cut(s) 284, 578, 632, 1334, 1388, 1667, 1857, 2174
BslFI GGGAC 2 cut(s) 678, 730
BslI CCNNNNNNNGG 8 cut(s) 187, 220, 308, 319, 808, 867, 941, 1195
BsmAI GTCTC 5 cut(s) 40, 1140, 1284, 1334, 1503
BsmFI GGGAC 2 cut(s) 678, 730
BsmI GAATGC 1 cut(s) 894
BsnI GGCC 7 cut(s) 74, 312, 860, 924, 1715, 2009, 2185
Bso31I GGTCTC 1 cut(s) 1140
BsoBI CYCGRG 4 cut(s) 631, 721, 1845, 1940
Bsp119I TTCGAA 1 cut(s) 2048
Bsp1286I GDGCHC 8 cut(s) 115, 283, 1424, 1649, 1683, 1941, 2074, 2174
Bsp13I TCCGGA 4 cut(s) 577, 1387, 1666, 1856
Bsp1720I GCTNAGC 1 cut(s) 2157
BspACI CCGC 9 cut(s) 965, 1003, 1082, 1393, 1514, 1576, 1835, 1913, 2129
BspANI GGCC 7 cut(s) 74, 312, 860, 924, 1715, 2009, 2185
BspCNI CTCAG 2 cut(s) 533, 1669
BspEI TCCGGA 4 cut(s) 577, 1387, 1666, 1856
BspFNI CGCG 1 cut(s) 1545
BspLI GGNNCC 7 cut(s) 877, 914, 953, 1040, 1177, 1208, 1375
BspOI GCTAGC 2 cut(s) 989, 1949
BspPI GGATC 6 cut(s) 320, 1201, 1214, 1379, 1538, 2234
BspT104I TTCGAA 1 cut(s) 2048
BspTI CTTAAG 1 cut(s) 95
BspTNI GGTCTC 1 cut(s) 1140
BsrDI GCAATG 1 cut(s) 960
BsrI ACTGG 7 cut(s) 46, 905, 1208, 1272, 2042, 2105, 2112
BssECI CCNNGG 4 cut(s) 631, 879, 1554, 1700
BssT1I CCWWGG 1 cut(s) 1554
Bst2UI CCWGG 3 cut(s) 1712, 1717, 2141
Bst4CI ACNGT 4 cut(s) 278, 811, 1432, 1755
Bst6I CTCTTC 2 cut(s) 856, 899
BstAFI CTTAAG 1 cut(s) 95
BstAPI GCANNNNNTGC 3 cut(s) 260, 1653, 2169
BstBI TTCGAA 1 cut(s) 2048
BstC8I GCNNGC 4 cut(s) 987, 1578, 1947, 2154
BstDEI CTNAG 4 cut(s) 520, 1677, 2157, 2247
BstDSI CCRYGG 1 cut(s) 1700
BstENI CCTNNNNNAGG 3 cut(s) 317, 939, 1193
BstF5I GGATG 5 cut(s) 586, 1663, 1777, 1807, 2182
BstFNI CGCG 1 cut(s) 1545
BstHHI GCGC 2 cut(s) 1547, 2163
BstMAI GTCTC 5 cut(s) 40, 1140, 1284, 1334, 1503
BstNI CCWGG 3 cut(s) 1712, 1717, 2141
BstSCI CCNGG 8 cut(s) 283, 630, 631, 1332, 1710, 1715, 2139, 2172
BstSLI GKGCMC 4 cut(s) 115, 1424, 1649, 2174
BstUI CGCG 1 cut(s) 1545
BstV1I GCAGC 2 cut(s) 1897, 2144
BstV2I GAAGAC 1 cut(s) 805
BstX2I RGATCY 5 cut(s) 325, 717, 1206, 1530, 2239
BstYI RGATCY 5 cut(s) 325, 717, 1206, 1530, 2239
Bsu36I CCTNAGG 1 cut(s) 520
BsuRI GGCC 7 cut(s) 74, 312, 860, 924, 1715, 2009, 2185
BtgI CCRYGG 1 cut(s) 1700
BtsCI GGATG 5 cut(s) 586, 1663, 1777, 1807, 2182
BtsIMutI CAGTG 2 cut(s) 39, 898
Cac8I GCNNGC 4 cut(s) 987, 1578, 1947, 2154
CfoI GCGC 2 cut(s) 1547, 2163
Cfr13I GGNCC 9 cut(s) 73, 434, 484, 912, 1039, 1390, 2008, 2109, 2184
Cfr9I CCCGGG 1 cut(s) 631
CpoI CGGWCCG 1 cut(s) 1390
CseI GACGC 1 cut(s) 2136
CsiI ACCWGGT 1 cut(s) 2139
Csp6I GTAC 2 cut(s) 791, 1541
CspI CGGWCCG 1 cut(s) 1390
CviAII CATG 6 cut(s) 77, 145, 193, 613, 749, 1104
CviQI GTAC 2 cut(s) 791, 1541
DdeI CTNAG 4 cut(s) 520, 1677, 2157, 2247
DraI TTTAAA 1 cut(s) 2016
DraIII CACNNNGTG 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 858
Eam1104I CTCTTC 2 cut(s) 856, 899
EarI CTCTTC 2 cut(s) 856, 899
Eco130I CCWWGG 1 cut(s) 1554
Eco147I AGGCCT 2 cut(s) 312, 1715
Eco24I GRGCYC 1 cut(s) 1941
Eco31I GGTCTC 1 cut(s) 1140
Eco47I GGWCC 6 cut(s) 434, 484, 912, 1039, 1390, 2109
Eco57I CTGAAG 2 cut(s) 125, 544
Eco81I CCTNAGG 1 cut(s) 520
Eco88I CYCGRG 4 cut(s) 631, 721, 1845, 1940
EcoNI CCTNNNNNAGG 3 cut(s) 317, 939, 1193
EcoO109I RGGNCCY 2 cut(s) 484, 1039
EcoRII CCWGG 3 cut(s) 1710, 1715, 2139
EcoT14I CCWWGG 1 cut(s) 1554
EcoT22I ATGCAT 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 1941
ErhI CCWWGG 1 cut(s) 1554
FaeI CATG 6 cut(s) 80, 148, 196, 616, 752, 1107
FalI AAGNNNNNCTT 2 cut(s) 2067, 2099
FaqI GGGAC 2 cut(s) 678, 730
FatI CATG 6 cut(s) 76, 144, 192, 612, 748, 1103
FauI CCCGC 1 cut(s) 1569
Fnu4HI GCNGC 5 cut(s) 1083, 1836, 1911, 2130, 2133
FokI GGATG 5 cut(s) 593, 1650, 1784, 1814, 2189
FriOI GRGCYC 1 cut(s) 1941
Fsp4HI GCNGC 5 cut(s) 1083, 1836, 1911, 2130, 2133
FspBI CTAG 7 cut(s) 306, 785, 986, 1116, 1595, 1881, 1946
GlaI GCGC 2 cut(s) 1546, 2162
GluI GCNGC 5 cut(s) 1083, 1836, 1911, 2130, 2133
GsuI CTGGAG 1 cut(s) 1694
HaeIII GGCC 7 cut(s) 74, 312, 860, 924, 1715, 2009, 2185
HapII CCGG 8 cut(s) 284, 578, 632, 1334, 1388, 1667, 1857, 2174
HgaI GACGC 1 cut(s) 2136
HhaI GCGC 2 cut(s) 1547, 2163
Hin1II CATG 6 cut(s) 80, 148, 196, 616, 752, 1107
Hin6I GCGC 2 cut(s) 1545, 2161
HinP1I GCGC 2 cut(s) 1545, 2161
HincII GTYRAC 3 cut(s) 274, 1186, 2098
HindII GTYRAC 3 cut(s) 274, 1186, 2098
HindIII AAGCTT 1 cut(s) 996
HpaI GTTAAC 1 cut(s) 2098
HpaII CCGG 8 cut(s) 284, 578, 632, 1334, 1388, 1667, 1857, 2174
Hpy166II GTNNAC 7 cut(s) 113, 274, 1186, 1647, 1704, 2035, 2098
Hpy188I TCNGA 4 cut(s) 19, 843, 1641, 1987
Hpy8I GTNNAC 7 cut(s) 113, 274, 1186, 1647, 1704, 2035, 2098
Hpy99I CGWCG 1 cut(s) 2152
HpyCH4III ACNGT 4 cut(s) 278, 811, 1432, 1755
HpyCH4V TGCA 6 cut(s) 113, 413, 837, 1321, 1647, 1656
HpyF3I CTNAG 4 cut(s) 520, 1677, 2157, 2247
Hsp92II CATG 6 cut(s) 80, 148, 196, 616, 752, 1107
HspAI GCGC 2 cut(s) 1545, 2161
Kpn2I TCCGGA 4 cut(s) 577, 1387, 1666, 1856
KspAI GTTAAC 1 cut(s) 2098
LmnI GCTCC 4 cut(s) 105, 286, 1379, 1552
Lsp1109I GCAGC 2 cut(s) 1897, 2144
LweI GCATC 8 cut(s) 263, 400, 739, 1012, 1633, 1762, 1792, 2218
MabI ACCWGGT 1 cut(s) 2139
MaeI CTAG 7 cut(s) 306, 785, 986, 1116, 1595, 1881, 1946
MaeIII GTNAC 8 cut(s) 37, 244, 446, 549, 956, 1005, 1613, 2233
MfeI CAATTG 2 cut(s) 705, 1839
MflI RGATCY 5 cut(s) 325, 717, 1206, 1530, 2239
MhlI GDGCHC 8 cut(s) 115, 283, 1424, 1649, 1683, 1941, 2074, 2174
MlsI TGGCCA 1 cut(s) 860
MluCI AATT 8 cut(s) 137, 293, 705, 818, 1222, 1398, 1657, 1839
MluNI TGGCCA 1 cut(s) 860
MlyI GAGTC 4 cut(s) 454, 461, 1699, 1982
MmeI TCCRAC 2 cut(s) 890, 1439
Mox20I TGGCCA 1 cut(s) 860
Mph1103I ATGCAT 1 cut(s) 415
MroI TCCGGA 4 cut(s) 577, 1387, 1666, 1856
MscI TGGCCA 1 cut(s) 860
MslI CAYNNNNRTG 1 cut(s) 2067
Msp20I TGGCCA 1 cut(s) 860
MspA1I CMGCKG 1 cut(s) 1516
MspCI CTTAAG 1 cut(s) 95
MspI CCGG 8 cut(s) 284, 578, 632, 1334, 1388, 1667, 1857, 2174
MspR9I CCNGG 8 cut(s) 285, 632, 633, 1334, 1712, 1717, 2141, 2174
MunI CAATTG 2 cut(s) 705, 1839
Mva1269I GAATGC 1 cut(s) 894
MvaI CCWGG 3 cut(s) 1712, 1717, 2141
MvnI CGCG 1 cut(s) 1545
NciI CCSGG 5 cut(s) 285, 632, 633, 1334, 2174
NheI GCTAGC 2 cut(s) 985, 1945
NlaIII CATG 6 cut(s) 80, 148, 196, 616, 752, 1107
NlaIV GGNNCC 7 cut(s) 877, 914, 953, 1040, 1177, 1208, 1375
NmeAIII GCCGAG 1 cut(s) 860
NmuCI GTSAC 5 cut(s) 37, 244, 446, 549, 1613
NsiI ATGCAT 1 cut(s) 415
NspV TTCGAA 1 cut(s) 2048
PaeR7I CTCGAG 1 cut(s) 1940
PceI AGGCCT 2 cut(s) 312, 1715
PctI GAATGC 1 cut(s) 894
PfeI GAWTC 8 cut(s) 701, 1048, 1256, 1306, 1811, 1850, 1982, 2214
PflMI CCANNNNNTGG 1 cut(s) 867
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 5 cut(s) 1084, 1837, 1912, 2131, 2134
PleI GAGTC 4 cut(s) 453, 461, 1699, 1982
PpsI GAGTC 4 cut(s) 453, 461, 1699, 1982
PpuMI RGGWCCY 2 cut(s) 484, 1039
PshBI ATTAAT 1 cut(s) 357
Psp5II RGGWCCY 2 cut(s) 484, 1039
Psp6I CCWGG 3 cut(s) 1710, 1715, 2139
PspGI CCWGG 3 cut(s) 1710, 1715, 2139
PspN4I GGNNCC 7 cut(s) 877, 914, 953, 1040, 1177, 1208, 1375
PspPI GGNCC 9 cut(s) 73, 434, 484, 912, 1039, 1390, 2008, 2109, 2184
PspPPI RGGWCCY 2 cut(s) 484, 1039
PspXI VCTCGAGB 1 cut(s) 1940
PsuI RGATCY 5 cut(s) 325, 717, 1206, 1530, 2239
RsaI GTAC 2 cut(s) 792, 1542
RsaNI GTAC 2 cut(s) 791, 1541
RseI CAYNNNNRTG 1 cut(s) 2067
Rsr2I CGGWCCG 1 cut(s) 1390
RsrII CGGWCCG 1 cut(s) 1390
SatI GCNGC 5 cut(s) 1083, 1836, 1911, 2130, 2133
Sau96I GGNCC 9 cut(s) 73, 434, 484, 912, 1039, 1390, 2008, 2109, 2184
SchI GAGTC 4 cut(s) 454, 461, 1699, 1982
ScrFI CCNGG 8 cut(s) 285, 632, 633, 1334, 1712, 1717, 2141, 2174
SduI GDGCHC 8 cut(s) 115, 283, 1424, 1649, 1683, 1941, 2074, 2174
SexAI ACCWGGT 1 cut(s) 2139
SfaNI GCATC 8 cut(s) 263, 400, 739, 1012, 1633, 1762, 1792, 2218
Sfr274I CTCGAG 1 cut(s) 1940
SfuI TTCGAA 1 cut(s) 2048
SinI GGWCC 6 cut(s) 434, 484, 912, 1039, 1390, 2109
SlaI CTCGAG 1 cut(s) 1940
SmaI CCCGGG 1 cut(s) 633
SmiMI CAYNNNNRTG 1 cut(s) 2067
SmlI CTYRAG 5 cut(s) 95, 1231, 1920, 1940, 2073
SmoI CTYRAG 5 cut(s) 95, 1231, 1920, 1940, 2073
Sse9I AATT 8 cut(s) 137, 293, 705, 818, 1222, 1398, 1657, 1839
SseBI AGGCCT 2 cut(s) 312, 1715
SsiI CCGC 9 cut(s) 965, 1003, 1082, 1393, 1514, 1576, 1835, 1913, 2129
SspI AATATT 1 cut(s) 64
SspMI CTAG 7 cut(s) 306, 785, 986, 1116, 1595, 1881, 1946
StuI AGGCCT 2 cut(s) 312, 1715
StyD4I CCNGG 8 cut(s) 283, 630, 631, 1332, 1710, 1715, 2139, 2172
StyI CCWWGG 1 cut(s) 1554
TaaI ACNGT 4 cut(s) 278, 811, 1432, 1755
TaqI TCGA 5 cut(s) 316, 1264, 1941, 2027, 2048
TaqII GACCGA 1 cut(s) 1122
TasI AATT 8 cut(s) 137, 293, 705, 818, 1222, 1398, 1657, 1839
TauI GCSGC 3 cut(s) 1085, 1838, 2132
TfiI GAWTC 8 cut(s) 701, 1048, 1256, 1306, 1811, 1850, 1982, 2214
TscAI CASTG 2 cut(s) 46, 905
TseFI GTSAC 5 cut(s) 37, 244, 446, 549, 1613
TseI GCWGC 2 cut(s) 1910, 2132
Tsp45I GTSAC 5 cut(s) 37, 244, 446, 549, 1613
TspDTI ATGAA 4 cut(s) 77, 161, 343, 1424
TspGWI ACGGA 1 cut(s) 944
TspMI CCCGGG 1 cut(s) 631
TspRI CASTG 2 cut(s) 46, 905
Van91I CCANNNNNTGG 1 cut(s) 867
Vha464I CTTAAG 1 cut(s) 95
VneI GTGCAC 2 cut(s) 111, 1645
VpaK11BI GGWCC 6 cut(s) 434, 484, 912, 1039, 1390, 2109
VspI ATTAAT 1 cut(s) 357
XagI CCTNNNNNAGG 3 cut(s) 317, 939, 1193
XapI RAATTY 2 cut(s) 293, 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 1107
XhoI CTCGAG 1 cut(s) 1940
XmaI CCCGGG 1 cut(s) 631
XspI CTAG 7 cut(s) 306, 785, 986, 1116, 1595, 1881, 1946
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.