Rmu_sc0031928.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031928.1
OG0000194
Physical Location & Seq
Forward (+)
38 .. 637
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031928.1_g000001.1.cds

Sequence Viewer

Length: 600 bp
atgctttcttacatccgagacataattgctaccaagatcaatggctggaaggcaaattttctctctcaagcgggacaagaagttcttttaaaagcagttgcttcggcaattcccacatatcccatgttgattttcctgcttctgaagactctctgtaaggctataaactctgatctagcaaatttttggtggggattcaaggacacaaagccaaaaattcattggaaggcctggtctaaattgtgtgaagcaaagtcaaagggtggattaggctttcgagagctcaatgccttcaataaggcccttcttaccaaacaatgctggcgtatcctgaagaaccccaatgcgttgtgggttaaggtgttaaaagggaggtattttccaaactcgtctttcttgactgccaaaaacggtcggcgtccttcatggggttggaacagcctaattgctgggagggacactatctctaatcatactgtaagggaaatcaacaatggaaggtcagttgatgtctggactaatcgatgggttcccaactccaatgggggtttgatcaaaccaactgatactcggaatcgattcacccccattgcggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

199

Amino Acids

22.63

Weight (kDa)

10.5

Isoelectric Point (pI)

17.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 71, 593
AcsI RAATTY 3 cut(s) 55, 181, 216
AcuI CTGAAG 2 cut(s) 164, 353
AcyI GRCGYC 1 cut(s) 418
AfiI CCNNNNNNNGG 2 cut(s) 428, 592
AgsI TTSAA 2 cut(s) 199, 295
AjnI CCWGG 1 cut(s) 230
AloI GAACNNNNNNTCC 2 cut(s) 66, 98
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 2 cut(s) 228, 300
ApoI RAATTY 3 cut(s) 55, 181, 216
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 574
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 285
BccI CCATC 1 cut(s) 519
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 1 cut(s) 338
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 1 cut(s) 176
BfuI GTATCC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 1 cut(s) 232
BpiI GAAGAC 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 51
Bsa29I ATCGAT 2 cut(s) 523, 577
BsaHI GRCGYC 1 cut(s) 418
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 592
Bse3DI GCAATG 1 cut(s) 588
BseBI CCWGG 1 cut(s) 232
BseCI ATCGAT 2 cut(s) 523, 577
BseGI GGATG 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 428, 592
BseMI GCAATG 1 cut(s) 588
BseYI CCCAGC 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 230, 302
BshVI ATCGAT 2 cut(s) 523, 577
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 1 cut(s) 285
BslFI GGGAC 2 cut(s) 87, 470
BslI CCNNNNNNNGG 2 cut(s) 428, 592
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 2 cut(s) 87, 470
BsnI GGCC 2 cut(s) 230, 302
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 3 cut(s) 36, 172, 552
BspACI CCGC 2 cut(s) 71, 593
BspANI GGCC 2 cut(s) 230, 302
BspDI ATCGAT 2 cut(s) 523, 577
BspLI GGNNCC 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 588
BssMI GATC 3 cut(s) 36, 172, 552
BssNI GRCGYC 1 cut(s) 418
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 413, 478
BstACI GRCGYC 1 cut(s) 418
BstC8I GCNNGC 1 cut(s) 323
BstF5I GGATG 1 cut(s) 12
BstKTI GATC 3 cut(s) 39, 175, 555
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 36, 172, 552
BstMCI CGRYCG 1 cut(s) 415
BstNI CCWGG 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 152
Bsu15I ATCGAT 2 cut(s) 523, 577
BsuI GTATCC 1 cut(s) 338
BsuRI GGCC 2 cut(s) 230, 302
BsuTUI ATCGAT 2 cut(s) 523, 577
BtsCI GGATG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 323
Cfr13I GGNCC 1 cut(s) 301
ClaI ATCGAT 2 cut(s) 523, 577
CseI GACGC 1 cut(s) 407
CviAII CATG 2 cut(s) 124, 426
CviJI RGCY 8 cut(s) 45, 161, 211, 230, 273, 283, 302, 441
CviKI_1 RGCY 8 cut(s) 45, 161, 211, 230, 273, 283, 302, 441
DpnI GATC 3 cut(s) 38, 174, 554
DpnII GATC 3 cut(s) 36, 172, 552
DraI TTTAAA 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 230
Eco24I GRGCYC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 2 cut(s) 164, 353
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 2 cut(s) 127, 429
FaiI YATR 6 cut(s) 23, 118, 125, 164, 427, 474
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 2 cut(s) 87, 470
FatI CATG 2 cut(s) 123, 425
FauI CCCGC 1 cut(s) 64
FbaI TGATCA 1 cut(s) 552
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 1 cut(s) 176
GsaI CCCAGC 1 cut(s) 453
HaeIII GGCC 2 cut(s) 230, 302
HgaI GACGC 1 cut(s) 407
Hin1I GRCGYC 1 cut(s) 418
Hin1II CATG 2 cut(s) 127, 429
HinfI GANTC 4 cut(s) 148, 195, 574, 579
HphI GGTGA 1 cut(s) 574
Hpy188I TCNGA 4 cut(s) 17, 144, 172, 573
Hpy188III TCNNGA 4 cut(s) 278, 331, 397, 514
HpyAV CCTTC 6 cut(s) 43, 220, 301, 314, 432, 492
HpyCH4III ACNGT 2 cut(s) 413, 478
Hsp92I GRCGYC 1 cut(s) 418
Hsp92II CATG 2 cut(s) 127, 429
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 3 cut(s) 36, 172, 552
LpnPI CCDG 8 cut(s) 31, 149, 217, 244, 307, 344, 435, 499
MaeI CTAG 1 cut(s) 176
MalI GATC 3 cut(s) 38, 174, 554
MboI GATC 3 cut(s) 36, 172, 552
MboII GAAGA 2 cut(s) 157, 346
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 7 cut(s) 24, 55, 108, 181, 216, 239, 444
MlyI GAGTC 1 cut(s) 142
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 2 cut(s) 366, 447
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 3 cut(s) 89, 357, 365
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
NdeII GATC 3 cut(s) 36, 172, 552
NlaIII CATG 2 cut(s) 127, 429
NlaIV GGNNCC 1 cut(s) 531
PceI AGGCCT 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 3 cut(s) 195, 574, 579
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 89, 357, 365
Sau3AI GATC 3 cut(s) 36, 172, 552
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 142
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 285
SetI ASST 4 cut(s) 285, 363, 377, 503
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
Sse9I AATT 7 cut(s) 24, 55, 108, 181, 216, 239, 444
SseBI AGGCCT 1 cut(s) 230
SsiI CCGC 2 cut(s) 71, 593
SspMI CTAG 1 cut(s) 176
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 230
TaaI ACNGT 2 cut(s) 413, 478
TaqI TCGA 3 cut(s) 277, 523, 577
TasI AATT 7 cut(s) 24, 55, 108, 181, 216, 239, 444
TfiI GAWTC 3 cut(s) 195, 574, 579
Tru1I TTAA 3 cut(s) 89, 357, 365
Tru9I TTAA 3 cut(s) 89, 357, 365
TspDTI ATGAA 2 cut(s) 209, 414
XapI RAATTY 3 cut(s) 55, 181, 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.