Rroxscaffold_6G00399080

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000194
Physical Location & Seq
Forward (+)
20984561 .. 20987968
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00399080.1

Sequence Viewer

Length: 366 bp
ATGGGGGAGATAAAAAAAAAAGAAGCTCTTGCCTACATTAAGGACGGGGTCGGCAGAAAGATTGATGGTTGGAAGCATAGTCCGCTTTCTATAGCGGGAAGGGAAATTTTGATTAAATCGGTTGCTATTGCCATTCCGTCCTACCCAATGACCTGTTTTAAGTTTCCCAATTCCATTTGTAACGAGATCAACTTACTTTTAAGCAACTTTTGGTGGGGTTACAATGATAGAGGAAACATAATTCACCGGAAAAATTGGGATTCTTTGAGCCTTGCAAAGGATGATGAGGGGATAGGATTCGAAATTTACATGATTTCAATATGGCACTATGGGCAAAACGATCTTGGAGGTTACTACAGAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

121

Amino Acids

13.89

Weight (kDa)

8.52

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 83, 95
AcsI RAATTY 2 cut(s) 105, 303
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 1 cut(s) 318
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
ApoI RAATTY 2 cut(s) 105, 303
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 300
BccI CCATC 1 cut(s) 59
BfmI CTRYAG 2 cut(s) 90, 355
Bpu14I TTCGAA 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 277
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 186, 340
BspACI CCGC 2 cut(s) 83, 95
BspT104I TTCGAA 1 cut(s) 300
BssMI GATC 2 cut(s) 186, 340
BstBI TTCGAA 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 2 cut(s) 189, 343
BstMBI GATC 2 cut(s) 186, 340
BstMWI GCNNNNNNNGC 2 cut(s) 82, 331
BstSFI CTRYAG 2 cut(s) 90, 355
BtsCI GGATG 1 cut(s) 286
CviAII CATG 1 cut(s) 310
CviJI RGCY 2 cut(s) 26, 270
CviKI_1 RGCY 2 cut(s) 26, 270
DpnI GATC 2 cut(s) 188, 342
DpnII GATC 2 cut(s) 186, 340
EcoNI CCTNNNNNAGG 1 cut(s) 275
FaeI CATG 1 cut(s) 313
FaiI YATR 6 cut(s) 78, 92, 239, 311, 322, 330
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 1 cut(s) 309
FauI CCCGC 1 cut(s) 88
FokI GGATG 1 cut(s) 293
HapII CCGG 1 cut(s) 247
Hin1II CATG 1 cut(s) 313
HinfI GANTC 2 cut(s) 260, 297
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 331
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 186, 340
LpnPI CCDG 2 cut(s) 166, 260
MaeIII GTNAC 3 cut(s) 179, 218, 350
MalI GATC 2 cut(s) 188, 342
MboI GATC 2 cut(s) 186, 340
MluCI AATT 5 cut(s) 105, 169, 240, 253, 303
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 3 cut(s) 224, 280, 341
MseI TTAA 4 cut(s) 39, 114, 159, 200
MspI CCGG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 82, 331
NdeII GATC 2 cut(s) 186, 340
NlaIII CATG 1 cut(s) 313
NspV TTCGAA 1 cut(s) 300
PfeI GAWTC 2 cut(s) 260, 297
PflFI GACNNNGTC 1 cut(s) 47
PsyI GACNNNGTC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 39, 114, 159, 200
Sau3AI GATC 2 cut(s) 186, 340
SetI ASST 4 cut(s) 28, 155, 352, 365
SfcI CTRYAG 2 cut(s) 90, 355
SfuI TTCGAA 1 cut(s) 300
SgeI CNNG 9 cut(s) 41, 58, 108, 165, 196, 259, 284, 322, 356
Sse9I AATT 5 cut(s) 105, 169, 240, 253, 303
SsiI CCGC 2 cut(s) 83, 95
TaqI TCGA 1 cut(s) 300
TasI AATT 5 cut(s) 105, 169, 240, 253, 303
TfiI GAWTC 2 cut(s) 260, 297
Tru1I TTAA 4 cut(s) 39, 114, 159, 200
Tru9I TTAA 4 cut(s) 39, 114, 159, 200
TspGWI ACGGA 1 cut(s) 126
Tth111I GACNNNGTC 1 cut(s) 47
XagI CCTNNNNNAGG 1 cut(s) 275
XapI RAATTY 2 cut(s) 105, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.