FvH4_3g21491

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000194
Physical Location & Seq
Reverse (-)
14602984 .. 14604202
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21491.t1

Sequence Viewer

Length: 807 bp
ATGAAAGCAAGATACTTCCCAAACTCCAATTTCTTGAAAGCAAAGAAAGGTTCTCGGCCTTCTTGGGTATGGAACAGCCTTTTAGCAGGTCGTGAGACGATAAGTGAGCATGCTCTGTGGCAGATTAATAGTGAAAAAAATGTGGATGTTTGGACCGATAGATGGGTTCCGAATTCTAATTGGGGACTGATCAAACCTATTATTACCTCTAATCGCTTCACTGCCTTGGCTGTGGCTGATGTAATTAATGAGGATAGAAATTGGAATATTTCTCACATTGAGCCATTTTTGGAGGAAAATGATATCACAACAATCAAGGCTATTCCAATTGGAAATGCAGCTGATGATGATGCATTGGTGTGGCCTTATACAAAGTCGGGAAACTATTCTGTAAAAAGTGGCTATCATAAGCTTTTCGAATTCCAGAAGAAGCCGCATGTAAGTAAGCCTTCCTCTTCCCACTCTTTTGATGTCAGAATATGGAAATTGATTTGGAAGCCAAGTTTGGCTCCCAAGATAACTAACTTCATGTGGAGAGCGTTGTCAAATGCCCTGCCTTCCATGTGGTGTCTCTTCCGAAGGAAAATTGTGAAAACTCCAATTTGTGCTATATGTGGCTACACTCCTGACAGGGGAAGGATTTCTCATCTTGAGGAGTGGTTGTTGGAAATTCATAAGAATGTTGGGGCTAGCCTCTTTCGGTCTCACAATTCGGCTGTAGAAGCTGAGGCTGAGGCGCTTCTTTGTGGTGTCAAAATGGCGGTGGTTCTGAAATTGGAGCATATTATTGTCGAAGGAGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 map04621
Pfam Domains
Protein Families
7tm_3 ANF_receptor NCD3G RVT_1 RVT_3 zf-RVT

Protein Analysis

269

Amino Acids

30.61

Weight (kDa)

9.13

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 129 - 208 1.5e-09 zinc-binding in reverse transcriptase
RVT_3 PF13456 229 - 268 7.6e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AciI CCGC 2 cut(s) 434, 761
AcsI RAATTY 3 cut(s) 172, 419, 669
AfiI CCNNNNNNNGG 2 cut(s) 162, 632
AgsI TTSAA 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AluBI AGCT 3 cut(s) 341, 412, 725
AluI AGCT 3 cut(s) 341, 412, 725
Alw26I GTCTC 3 cut(s) 89, 575, 708
AoxI GGCC 2 cut(s) 56, 362
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 3 cut(s) 172, 419, 669
AseI ATTAAT 2 cut(s) 126, 246
Asp700I GAANNNNTTC 2 cut(s) 385, 640
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 1 cut(s) 153
AsuII TTCGAA 1 cut(s) 417
AsuNHI GCTAGC 1 cut(s) 689
AvaII GGWCC 1 cut(s) 153
BbvCI CCTCAGC 2 cut(s) 726, 732
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 156
BclI TGATCA 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 89, 575, 708
BfaI CTAG 1 cut(s) 690
BfmI CTRYAG 1 cut(s) 717
BfoI RGCGCY 1 cut(s) 740
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 2 cut(s) 339, 434
BlsI GCNGC 2 cut(s) 340, 435
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 168, 510
BmsI GCATC 1 cut(s) 340
BmtI GCTAGC 1 cut(s) 693
Bpu10I CCTNAGC 2 cut(s) 726, 732
Bpu14I TTCGAA 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 671
BsaI GGTCTC 1 cut(s) 708
BsaJI CCNNGG 1 cut(s) 225
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 632
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 162, 632
BseMII CTCAG 2 cut(s) 717, 723
BseRI GAGGAG 1 cut(s) 668
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 2 cut(s) 58, 364
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 2 cut(s) 162, 632
BsmAI GTCTC 3 cut(s) 89, 575, 708
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 2 cut(s) 58, 364
Bso31I GGTCTC 1 cut(s) 708
Bsp119I TTCGAA 1 cut(s) 417
Bsp143I GATC 1 cut(s) 189
BspACI CCGC 2 cut(s) 434, 761
BspANI GGCC 2 cut(s) 58, 364
BspCNI CTCAG 2 cut(s) 718, 724
BspLI GGNNCC 2 cut(s) 168, 510
BspMI ACCTGC 1 cut(s) 77
BspOI GCTAGC 1 cut(s) 693
BspT104I TTCGAA 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 708
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 225
Bst6I CTCTTC 2 cut(s) 460, 578
BstBI TTCGAA 1 cut(s) 417
BstC8I GCNNGC 2 cut(s) 111, 691
BstDEI CTNAG 2 cut(s) 726, 732
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 3 cut(s) 89, 575, 708
BstMBI GATC 1 cut(s) 189
BstMWI GCNNNNNNNGC 1 cut(s) 722
BstNSI RCATGY 2 cut(s) 113, 440
BstSFI CTRYAG 1 cut(s) 717
BstV1I GCAGC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 58, 364
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 2 cut(s) 111, 691
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 4 cut(s) 110, 437, 529, 562
DdeI CTNAG 2 cut(s) 726, 732
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
Eam1104I CTCTTC 2 cut(s) 460, 578
EarI CTCTTC 2 cut(s) 460, 578
Eco130I CCWWGG 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 708
Eco32I GATATC 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 153
EcoRI GAATTC 2 cut(s) 172, 419
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 225
EcoT22I ATGCAT 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 225
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 4 cut(s) 113, 440, 532, 565
FalI AAGNNNNNCTT 2 cut(s) 433, 465
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 109, 436, 528, 561
FbaI TGATCA 1 cut(s) 189
Fnu4HI GCNGC 2 cut(s) 339, 434
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 339, 434
FspBI CTAG 1 cut(s) 690
GlaI GCGC 1 cut(s) 738
GluI GCNGC 2 cut(s) 339, 434
HaeII RGCGCY 1 cut(s) 740
HaeIII GGCC 2 cut(s) 58, 364
HhaI GCGC 1 cut(s) 739
Hin1II CATG 4 cut(s) 113, 440, 532, 565
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HindIII AAGCTT 1 cut(s) 410
Hpy188I TCNGA 4 cut(s) 171, 476, 578, 771
Hpy188III TCNNGA 6 cut(s) 34, 92, 378, 424, 626, 650
HpyAV CCTTC 6 cut(s) 69, 459, 567, 573, 630, 788
HpyCH4V TGCA 2 cut(s) 338, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 722
HpyF3I CTNAG 2 cut(s) 726, 732
Hsp92II CATG 4 cut(s) 113, 440, 532, 565
HspAI GCGC 1 cut(s) 737
Ksp22I TGATCA 1 cut(s) 189
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 514, 778
LpnPI CCDG 5 cut(s) 72, 437, 566, 616, 639
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 340
MaeI CTAG 1 cut(s) 690
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 3 cut(s) 439, 447, 565
MfeI CAATTG 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 217, 244, 286, 463, 646, 704, 721, 727
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 2 cut(s) 385, 640
MseI TTAA 2 cut(s) 126, 246
MslI CAYNNNNRTG 2 cut(s) 358, 678
MspA1I CMGCKG 1 cut(s) 341
MunI CAATTG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 722
NdeII GATC 1 cut(s) 189
NheI GCTAGC 1 cut(s) 689
NlaIII CATG 4 cut(s) 113, 440, 532, 565
NlaIV GGNNCC 2 cut(s) 168, 510
NmeAIII GCCGAG 1 cut(s) 34
NsiI ATGCAT 1 cut(s) 355
NspI RCATGY 2 cut(s) 113, 440
NspV TTCGAA 1 cut(s) 417
PaeI GCATGC 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 385, 640
PkrI GCNGC 2 cut(s) 340, 435
PshBI ATTAAT 2 cut(s) 126, 246
PspN4I GGNNCC 2 cut(s) 168, 510
PspPI GGNCC 1 cut(s) 153
PvuII CAGCTG 1 cut(s) 341
RseI CAYNNNNRTG 2 cut(s) 358, 678
SaqAI TTAA 2 cut(s) 126, 246
SatI GCNGC 2 cut(s) 339, 434
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 153
SetI ASST 7 cut(s) 52, 91, 199, 209, 343, 414, 727
SfaNI GCATC 1 cut(s) 340
SfcI CTRYAG 1 cut(s) 717
SfuI TTCGAA 1 cut(s) 417
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 2 cut(s) 358, 678
SmlI CTYRAG 1 cut(s) 650
SmoI CTYRAG 1 cut(s) 650
SphI GCATGC 1 cut(s) 113
SsiI CCGC 2 cut(s) 434, 761
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 690
StyI CCWWGG 1 cut(s) 225
TaqI TCGA 2 cut(s) 417, 792
TaqII GACCGA 2 cut(s) 170, 690
TauI GCSGC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 126, 246
Tru9I TTAA 2 cut(s) 126, 246
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 17, 517, 662
TspRI CASTG 1 cut(s) 226
VpaK11BI GGWCC 1 cut(s) 153
VspI ATTAAT 2 cut(s) 126, 246
XapI RAATTY 3 cut(s) 172, 419, 669
XceI RCATGY 2 cut(s) 113, 440
XmnI GAANNNNTTC 2 cut(s) 385, 640
XspI CTAG 1 cut(s) 690
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.