pycom07g08600

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000194
Physical Location & Seq
Forward (+)
7879042 .. 7882014
2973 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g08600.5

Sequence Viewer

Length: 2430 bp
ATGCGGTGTTTCAAATGGGGAGTCTTAAAGCACCAGGGCCGGATGGATTTCAAGGGATTTTTTTATCAAAGCTATTGGAATGTGATCTCACAGAAGGTAAAAGGAATTGCCATGGACTTCATGAATGTGGCGGTTAGTCCTAAAAAGCTAAATTCCACAGATTTTAGGCCTATAAGCCTGTGTAATTATTCCTACAATGTACTCTCAAAGATCCTTTCTAATCGACTTAAACCTCTCTTACCCAATTTAATTTCTCCGATATTGATTGCTCATGAGATTTTTCATTTCATGAAACTCAGGAGGACAAAAAGAAAATTCGAGCTGGACTTCTTGGAGGAGGCTATGCTCAAAATGGGGTTTGATCGGAGATGGGTGAGTTTAATCATGAAGTGTGTGGTCACTGTTGACTTTTCCATTATAATTAATGGAAGACCTAGAAACAAATTTCTCAAGGGGATCCTCTGTCTCTCTATCTTTTTTTTTATTGGGAGTTTCTTAGCGGTATTAAAATCAGTTCTAATAGTCCCTGCCTTTAACATATGTTCTTTGCAGATGACACTTTGTTTTTTCTCCAGGCTAATCAACAAAACTGCAGGAATATTGTTAAAATCTTACAAGCTTATTGTGCTGCCTCGAGACAACATGTTAGTCTTAATAAATCAAGTGTTTATTTCAGTGCCAATACCCCAAGGGCAATTAGGGAGGAGATGGGTGCAATACTTGGGATGCCTATTGTTGAAAACCCTGGTACTTATTTGGGTCTGCCAACAATCTAGGGTAGGTCTAAATATTCAGGGGTGGAAACAAAAATTGTTGTCACATGAGGGTAAAGAAGTCCTAATTGAAGCCATTCCTGTTTATCCAATGAAAATTTTTAAATTCCCTGCTCAGTTCTGCGAGGAATTAAATTCTCTGATTGCTGGTTTATGGTGGGTGCACAATAATGAAAATAAGAATATTCATTGGGTTAGCTGGGATGTTCTTGGGTTATCGAAACAAGAGGGTGGGTTCGGGTTTAGAAATTTACAAGAGTTCAATATGGCTTTGTTGACAAAACAGTGCTGGAGAATGTTGATGGAGCCTGATTCTTTGTGGGCCAGAGTTATGAAAGCAAGATACTTCCCACATTCCTCATTTCTTAAGGCTAGAAAGGGATGTAGAGCCTCCTGGGTGTGGTGGCAGGTAATGAATGGTATGAACATCAGAATTTGGGTGGATCATTGGGCTCCTTCTTTGCCAAATGGGCATCCTAATCCTTTGGAGCCTGCTAATATAAATTGGAATCAAAATGTTGCCTCTATAATTCGGGATCAGATAAAAGAAATACAAATTGGAGACCCTTCCTGTGATGATAGATTCATTTGGCCATCGGAGAAGAGAGGCATGTATACGATTAAATCTGGCTATCATTGGATACATAACAGAGAGGCTCCTTTGCGGCATAGGAGATCATCTTTACTTGCATCTATCAACAAACATGTTTGGACAAGTATTTGGAAGCTGGAAGCCCCGCCAAAGATCAGACTGTTTATGTGGTGCATCCTCCACATAGCTCTTGCAACCAGGTTAGATCTTTCTAAAAGACATGTTAATATTTCTCCAATTTCCCCTATATGCAATAAGGAAGATGAATTGGTGGAGCATATGCTTTTGTTGTGCCCATGGGTCGAACCGGTCTGGTTTGGAGGCCAACTGAATTACAAGGTGAATCGATTTGAAATTGATACAAAAAACTCGAATATTATCACAAGTGGCTTTTACTTGTTGGAATATATGGAAAGAGAGATGAAATGCTATTTTCAATCAGAAAATTGCTGCTTTCAAGGCAGTCACGTACATTCAAATGGGGTTCCTCAAATAATATCGGTTTGGTCTCCACCTAAGTTTGCATGGTACAAGGTAAATGTTGATTCCAGTTGGAGTTCGACGACGAAAAAGGGCCATGTTGCCGCCGTGATTAGGGACTCCAATGGAAGGTTTATTGATGAGGACAAGGCCCTGTTAGAGGGGTGCAAGCCTGCTAATTATTTGGAGTTAGGGAAGGTTATAATTGAATCGAATTCTAAGGAAGTTGTCTCAAGCTTATCTAATTCCATTTATCAGGGTAGATGGGAGATGGTTCCAGTGCTTTGCAAAGCAATGAATATGAAGGGATCCTTCCAACAGTGTCTTTGGTCTTGGGTTCCTCGATCCGCCAATAGGGCGGTGGACATACTAGCTTCTGTGAAGAATTTGGAGATGAGCAATTATACTTGGGTCGAAAGACCCCCATCTTTGATTGTATATATTCTAAAAAATGATGTTAGGGTGACATATTTGTTATTACTTTGGTTTTTTAGCTTGGTTAGTCCTCTGTGTGGGCTTTCTTGTTGTACTCTAACTTTGCCTTGGTGTATTTCCAGTTTTCCAAAAATAAAAAATAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

810

Amino Acids

93.99

Weight (kDa)

9.59

Isoelectric Point (pI)

45.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 419, 2048
Acc36I ACCTGC 1 cut(s) 1171
AccI GTMKAC 1 cut(s) 1388
AciI CCGC 8 cut(s) 4, 131, 500, 1438, 1511, 1950, 2193, 2204
AclWI GGATC 8 cut(s) 205, 451, 464, 1224, 1317, 2148, 2161, 2184
AcoI YGGCCR 1 cut(s) 1364
AfaI GTAC 5 cut(s) 201, 750, 1836, 1895, 2374
AfiI CCNNNNNNNGG 6 cut(s) 1173, 1959, 1974, 2005, 2199, 2357
AflII CTTAAG 1 cut(s) 1139
AflIII ACRYGT 3 cut(s) 642, 1477, 1585
AgeI ACCGGT 1 cut(s) 1672
AjnI CCWGG 5 cut(s) 33, 572, 744, 1166, 1562
AjuI GAANNNNNNNTTGG 2 cut(s) 1314, 1346
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 5 cut(s) 470, 630, 1329, 1878, 2080
Alw44I GTGCAC 1 cut(s) 935
AlwI GGATC 8 cut(s) 205, 451, 464, 1224, 1317, 2148, 2161, 2184
Ama87I CYCGRG 1 cut(s) 633
AoxI GGCC 7 cut(s) 37, 167, 1095, 1364, 1687, 1939, 1995
ApaLI GTGCAC 1 cut(s) 935
ApeKI GCWGC 2 cut(s) 628, 1815
ArsI GACNNNNNNTTYG 1 cut(s) 38
AseI ATTAAT 1 cut(s) 423
AsiGI ACCGGT 1 cut(s) 1672
Asp700I GAANNNNTTC 1 cut(s) 849
AspS9I GGNCC 4 cut(s) 37, 1095, 1939, 1996
AsuHPI GGTGA 3 cut(s) 385, 1717, 2320
AvaI CYCGRG 1 cut(s) 633
BaeGI GKGCMC 2 cut(s) 939, 1661
BalI TGGCCA 1 cut(s) 1366
BamHI GGATCC 2 cut(s) 456, 2153
BanII GRGCYC 1 cut(s) 1228
BbsI GAAGAC 1 cut(s) 436
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 2 cut(s) 615, 1802
BccI CCATC 8 cut(s) 37, 363, 702, 1069, 1375, 2103, 2110, 2278
BceAI ACGGC 1 cut(s) 1937
BciT130I CCWGG 5 cut(s) 35, 574, 746, 1168, 1564
BciVI GTATCC 1 cut(s) 1407
BcoDI GTCTC 5 cut(s) 470, 630, 1329, 1878, 2080
BfaI CTAG 4 cut(s) 435, 774, 1146, 2216
BfmI CTRYAG 1 cut(s) 591
BfrI CTTAAG 1 cut(s) 1139
BfuAI ACCTGC 1 cut(s) 1171
BfuI GTATCC 1 cut(s) 1407
BglI GCCNNNNNGGC 2 cut(s) 1243, 2201
BglII AGATCT 1 cut(s) 1570
BisI GCNGC 4 cut(s) 629, 1439, 1816, 1950
BlsI GCNGC 4 cut(s) 630, 1440, 1817, 1951
Bme1390I CCNGG 5 cut(s) 35, 574, 746, 1168, 1564
BmeT110I CYCGRG 1 cut(s) 633
BmgT120I GGNCC 4 cut(s) 37, 1095, 1939, 1996
BmiI GGNNCC 9 cut(s) 458, 1080, 1227, 1263, 1431, 1851, 2121, 2155, 2184
BmrFI CCNGG 5 cut(s) 35, 574, 746, 1168, 1564
BmsI GCATC 4 cut(s) 716, 1255, 1472, 1548
BpiI GAAGAC 1 cut(s) 436
BpmI CTGGAG 2 cut(s) 556, 1084
BpuEI CTTGAG 2 cut(s) 434, 2062
Bsa29I ATCGAT 1 cut(s) 1711
BsaAI YACGTR 1 cut(s) 1834
BsaI GGTCTC 2 cut(s) 1329, 1878
BsaJI CCNNGG 7 cut(s) 34, 111, 688, 744, 1167, 1661, 2387
BsaWI WCCGGW 1 cut(s) 1672
Bsc4I CCNNNNNNNGG 6 cut(s) 1173, 1959, 1974, 2005, 2199, 2357
Bse118I RCCGGY 1 cut(s) 1672
Bse1I ACTGG 3 cut(s) 1914, 2123, 2400
Bse3DI GCAATG 1 cut(s) 2145
BseBI CCWGG 5 cut(s) 35, 574, 746, 1168, 1564
BseCI ATCGAT 1 cut(s) 1711
BseDI CCNNGG 7 cut(s) 34, 111, 688, 744, 1167, 1661, 2387
BseGI GGATG 6 cut(s) 48, 731, 982, 1160, 1246, 1539
BseLI CCNNNNNNNGG 6 cut(s) 1173, 1959, 1974, 2005, 2199, 2357
BseMI GCAATG 1 cut(s) 2145
BseMII CTCAG 2 cut(s) 310, 902
BseNI ACTGG 3 cut(s) 1914, 2123, 2400
BseRI GAGGAG 2 cut(s) 350, 718
BseSI GKGCMC 2 cut(s) 939, 1661
BseXI GCAGC 2 cut(s) 615, 1802
BseYI CCCAGC 1 cut(s) 972
BshFI GGCC 7 cut(s) 39, 169, 1097, 1366, 1689, 1941, 1997
BshTI ACCGGT 1 cut(s) 1672
BshVI ATCGAT 1 cut(s) 1711
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 633
BsiSI CCGG 2 cut(s) 40, 1673
BslFI GGGAC 2 cut(s) 509, 1976
BslI CCNNNNNNNGG 6 cut(s) 1173, 1959, 1974, 2005, 2199, 2357
BsmAI GTCTC 5 cut(s) 470, 630, 1329, 1878, 2080
BsmFI GGGAC 2 cut(s) 509, 1976
BsnI GGCC 7 cut(s) 39, 169, 1097, 1366, 1689, 1941, 1997
Bso31I GGTCTC 2 cut(s) 1329, 1878
BsoBI CYCGRG 1 cut(s) 633
Bsp1286I GDGCHC 3 cut(s) 939, 1228, 1661
Bsp19I CCATGG 2 cut(s) 111, 1661
BspACI CCGC 8 cut(s) 4, 131, 500, 1438, 1511, 1950, 2193, 2204
BspANI GGCC 7 cut(s) 39, 169, 1097, 1366, 1689, 1941, 1997
BspCNI CTCAG 2 cut(s) 309, 901
BspDI ATCGAT 1 cut(s) 1711
BspHI TCATGA 4 cut(s) 120, 271, 288, 384
BspLI GGNNCC 9 cut(s) 458, 1080, 1227, 1263, 1431, 1851, 2121, 2155, 2184
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 1171
BspPI GGATC 8 cut(s) 205, 451, 464, 1224, 1317, 2148, 2161, 2184
BspTI CTTAAG 1 cut(s) 1139
BspTNI GGTCTC 2 cut(s) 1329, 1878
BsrDI GCAATG 1 cut(s) 2145
BsrFI RCCGGY 1 cut(s) 1672
BsrI ACTGG 3 cut(s) 1914, 2123, 2400
BssAI RCCGGY 1 cut(s) 1672
BssECI CCNNGG 7 cut(s) 34, 111, 688, 744, 1167, 1661, 2387
BssNAI GTATAC 1 cut(s) 1389
BssT1I CCWWGG 4 cut(s) 111, 688, 1661, 2387
Bst1107I GTATAC 1 cut(s) 1389
Bst2UI CCWGG 5 cut(s) 35, 574, 746, 1168, 1564
Bst4CI ACNGT 4 cut(s) 403, 1059, 1527, 2166
Bst6I CTCTTC 1 cut(s) 1370
BstAFI CTTAAG 1 cut(s) 1139
BstBAI YACGTR 1 cut(s) 1834
BstC8I GCNNGC 3 cut(s) 1266, 2015, 2019
BstDEI CTNAG 5 cut(s) 296, 496, 888, 1881, 2064
BstDSI CCRYGG 2 cut(s) 111, 1661
BstENI CCTNNNNNAGG 1 cut(s) 2003
BstF5I GGATG 6 cut(s) 48, 731, 982, 1160, 1246, 1539
BstMAI GTCTC 5 cut(s) 470, 630, 1329, 1878, 2080
BstMWI GCNNNNNNNGC 4 cut(s) 625, 1243, 1824, 2201
BstNI CCWGG 5 cut(s) 35, 574, 746, 1168, 1564
BstNSI RCATGY 4 cut(s) 646, 1387, 1481, 1589
BstSCI CCNGG 5 cut(s) 33, 572, 744, 1166, 1562
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 2 cut(s) 939, 1661
BstV1I GCAGC 2 cut(s) 615, 1802
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 4 cut(s) 210, 456, 1570, 2153
BstYI RGATCY 4 cut(s) 210, 456, 1570, 2153
BstZ17I GTATAC 1 cut(s) 1389
Bsu15I ATCGAT 1 cut(s) 1711
BsuI GTATCC 1 cut(s) 1407
BsuRI GGCC 7 cut(s) 39, 169, 1097, 1366, 1689, 1941, 1997
BsuTUI ATCGAT 1 cut(s) 1711
BtgI CCRYGG 2 cut(s) 111, 1661
BtsCI GGATG 6 cut(s) 48, 731, 982, 1160, 1246, 1539
BtsIMutI CAGTG 5 cut(s) 399, 681, 1064, 2130, 2171
BveI ACCTGC 1 cut(s) 1171
Cac8I GCNNGC 3 cut(s) 1266, 2015, 2019
CciI TCATGA 4 cut(s) 120, 271, 288, 384
Cfr10I RCCGGY 1 cut(s) 1672
Cfr13I GGNCC 4 cut(s) 37, 1095, 1939, 1996
ClaI ATCGAT 1 cut(s) 1711
CsiI ACCWGGT 1 cut(s) 1562
Csp6I GTAC 5 cut(s) 200, 749, 1835, 1894, 2373
CspAI ACCGGT 1 cut(s) 1672
CviQI GTAC 5 cut(s) 200, 749, 1835, 1894, 2373
DdeI CTNAG 5 cut(s) 296, 496, 888, 1881, 2064
DraI TTTAAA 1 cut(s) 877
EaeI YGGCCR 1 cut(s) 1364
Eam1104I CTCTTC 1 cut(s) 1370
EarI CTCTTC 1 cut(s) 1370
EciI GGCGGA 1 cut(s) 2182
Eco130I CCWWGG 4 cut(s) 111, 688, 1661, 2387
Eco147I AGGCCT 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 1228
Eco31I GGTCTC 2 cut(s) 1329, 1878
Eco88I CYCGRG 1 cut(s) 633
EcoNI CCTNNNNNAGG 1 cut(s) 2003
EcoO109I RGGNCCY 1 cut(s) 1996
EcoRI GAATTC 1 cut(s) 2059
EcoRII CCWGG 5 cut(s) 33, 572, 744, 1166, 1562
EcoT14I CCWWGG 4 cut(s) 111, 688, 1661, 2387
EcoT38I GRGCYC 1 cut(s) 1228
ErhI CCWWGG 4 cut(s) 111, 688, 1661, 2387
FalI AAGNNNNNCTT 2 cut(s) 2141, 2173
FaqI GGGAC 2 cut(s) 509, 1976
FauI CCCGC 1 cut(s) 1518
FauNDI CATATG 2 cut(s) 539, 1644
FblI GTMKAC 1 cut(s) 1388
Fnu4HI GCNGC 4 cut(s) 629, 1439, 1816, 1950
FokI GGATG 6 cut(s) 55, 738, 989, 1167, 1233, 1526
FriOI GRGCYC 1 cut(s) 1228
Fsp4HI GCNGC 4 cut(s) 629, 1439, 1816, 1950
FspBI CTAG 4 cut(s) 435, 774, 1146, 2216
GluI GCNGC 4 cut(s) 629, 1439, 1816, 1950
GsaI CCCAGC 1 cut(s) 976
GsuI CTGGAG 2 cut(s) 556, 1084
HaeIII GGCC 7 cut(s) 39, 169, 1097, 1366, 1689, 1941, 1997
HapII CCGG 2 cut(s) 40, 1673
HincII GTYRAC 2 cut(s) 406, 1050
HindII GTYRAC 2 cut(s) 406, 1050
HindIII AAGCTT 2 cut(s) 617, 2080
HinfI GANTC 8 cut(s) 21, 1085, 1282, 1356, 1708, 1910, 1964, 2054
HpaII CCGG 2 cut(s) 40, 1673
HphI GGTGA 3 cut(s) 385, 1717, 2320
Hpy166II GTNNAC 5 cut(s) 406, 937, 1050, 1389, 2209
Hpy188I TCNGA 8 cut(s) 258, 366, 915, 1205, 1314, 1372, 1523, 1807
Hpy188III TCNNGA 7 cut(s) 121, 272, 289, 298, 385, 635, 1307
Hpy8I GTNNAC 5 cut(s) 406, 937, 1050, 1389, 2209
Hpy99I CGWCG 2 cut(s) 1930, 1933
HpyAV CCTTC 7 cut(s) 88, 1239, 1350, 1968, 2035, 2143, 2167
HpyCH4III ACNGT 4 cut(s) 403, 1059, 1527, 2166
HpyCH4IV ACGT 1 cut(s) 1833
HpyF10VI GCNNNNNNNGC 4 cut(s) 625, 1243, 1824, 2201
HpyF3I CTNAG 5 cut(s) 296, 496, 888, 1881, 2064
HpySE526I ACGT 1 cut(s) 1833
LmnI GCTCC 5 cut(s) 1078, 1231, 1261, 1435, 1639
Lsp1109I GCAGC 2 cut(s) 615, 1802
LweI GCATC 4 cut(s) 716, 1255, 1472, 1548
MabI ACCWGGT 1 cut(s) 1562
MaeI CTAG 4 cut(s) 435, 774, 1146, 2216
MaeII ACGT 1 cut(s) 1833
MaeIII GTNAC 4 cut(s) 397, 816, 1829, 2308
MboII GAAGA 4 cut(s) 441, 1387, 1637, 2239
MflI RGATCY 4 cut(s) 210, 456, 1570, 2153
MhlI GDGCHC 3 cut(s) 939, 1228, 1661
MlsI TGGCCA 1 cut(s) 1366
MluNI TGGCCA 1 cut(s) 1366
MlyI GAGTC 2 cut(s) 30, 1958
MmeI TCCRAC 3 cut(s) 1746, 1898, 2185
Mox20I TGGCCA 1 cut(s) 1366
MroXI GAANNNNTTC 1 cut(s) 849
MscI TGGCCA 1 cut(s) 1366
MslI CAYNNNNRTG 3 cut(s) 125, 942, 1842
Msp20I TGGCCA 1 cut(s) 1366
MspCI CTTAAG 1 cut(s) 1139
MspI CCGG 2 cut(s) 40, 1673
MspR9I CCNGG 5 cut(s) 35, 574, 746, 1168, 1564
MvaI CCWGG 5 cut(s) 35, 574, 746, 1168, 1564
MwoI GCNNNNNNNGC 4 cut(s) 625, 1243, 1824, 2201
NcoI CCATGG 2 cut(s) 111, 1661
NdeI CATATG 2 cut(s) 539, 1644
NlaIV GGNNCC 9 cut(s) 458, 1080, 1227, 1263, 1431, 1851, 2121, 2155, 2184
NmuCI GTSAC 4 cut(s) 397, 816, 1829, 2308
NspI RCATGY 4 cut(s) 646, 1387, 1481, 1589
PaeR7I CTCGAG 1 cut(s) 633
PagI TCATGA 4 cut(s) 120, 271, 288, 384
PceI AGGCCT 1 cut(s) 169
PciI ACATGT 3 cut(s) 642, 1477, 1585
PdmI GAANNNNTTC 1 cut(s) 849
PfeI GAWTC 6 cut(s) 1085, 1282, 1356, 1708, 1910, 2054
PinAI ACCGGT 1 cut(s) 1672
PkrI GCNGC 4 cut(s) 630, 1440, 1817, 1951
PleI GAGTC 2 cut(s) 29, 1958
PpsI GAGTC 2 cut(s) 29, 1958
Ppu21I YACGTR 1 cut(s) 1834
PscI ACATGT 3 cut(s) 642, 1477, 1585
PshBI ATTAAT 1 cut(s) 423
PsiI TTATAA 2 cut(s) 419, 2048
Psp6I CCWGG 5 cut(s) 33, 572, 744, 1166, 1562
PspFI CCCAGC 1 cut(s) 972
PspGI CCWGG 5 cut(s) 33, 572, 744, 1166, 1562
PspN4I GGNNCC 9 cut(s) 458, 1080, 1227, 1263, 1431, 1851, 2121, 2155, 2184
PspPI GGNCC 4 cut(s) 37, 1095, 1939, 1996
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 4 cut(s) 210, 456, 1570, 2153
RsaI GTAC 5 cut(s) 201, 750, 1836, 1895, 2374
RsaNI GTAC 5 cut(s) 200, 749, 1835, 1894, 2373
RseI CAYNNNNRTG 3 cut(s) 125, 942, 1842
SatI GCNGC 4 cut(s) 629, 1439, 1816, 1950
Sau96I GGNCC 4 cut(s) 37, 1095, 1939, 1996
SchI GAGTC 2 cut(s) 30, 1958
ScrFI CCNGG 5 cut(s) 35, 574, 746, 1168, 1564
SduI GDGCHC 3 cut(s) 939, 1228, 1661
SexAI ACCWGGT 1 cut(s) 1562
SfaNI GCATC 4 cut(s) 716, 1255, 1472, 1548
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 633
SlaI CTCGAG 1 cut(s) 633
SmiMI CAYNNNNRTG 3 cut(s) 125, 942, 1842
SmlI CTYRAG 4 cut(s) 449, 633, 1139, 2077
SmoI CTYRAG 4 cut(s) 449, 633, 1139, 2077
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 8 cut(s) 4, 131, 500, 1438, 1511, 1950, 2193, 2204
SspI AATATT 5 cut(s) 600, 790, 958, 1594, 1741
SspMI CTAG 4 cut(s) 435, 774, 1146, 2216
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 5 cut(s) 33, 572, 744, 1166, 1562
StyI CCWWGG 4 cut(s) 111, 688, 1661, 2387
TaaI ACNGT 4 cut(s) 403, 1059, 1527, 2166
TaiI ACGT 1 cut(s) 1836
TatI WGTACW 2 cut(s) 199, 2372
TauI GCSGC 2 cut(s) 1441, 1952
TfiI GAWTC 6 cut(s) 1085, 1282, 1356, 1708, 1910, 2054
TscAI CASTG 5 cut(s) 406, 681, 1064, 2130, 2171
TseFI GTSAC 4 cut(s) 397, 816, 1829, 2308
TseI GCWGC 2 cut(s) 628, 1815
Tsp45I GTSAC 4 cut(s) 397, 816, 1829, 2308
TspRI CASTG 5 cut(s) 406, 681, 1064, 2130, 2171
Vha464I CTTAAG 1 cut(s) 1139
VneI GTGCAC 1 cut(s) 935
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 2003
XceI RCATGY 4 cut(s) 646, 1387, 1481, 1589
XcmI CCANNNNNNNNNTGG 1 cut(s) 2203
XhoI CTCGAG 1 cut(s) 633
XmiI GTMKAC 1 cut(s) 1388
XmnI GAANNNNTTC 1 cut(s) 849
XspI CTAG 4 cut(s) 435, 774, 1146, 2216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.