pycom11g10940

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000194
Physical Location & Seq
Forward (+)
9351467 .. 9353422
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g10940.1

Sequence Viewer

Length: 1956 bp
ATGCTGGACAAATTTTGTGTGGCGTCTGGGCAGAAGGTTAATTTGGAGAAATCCAGTGTTTTCTTTGGGGCAAATGTTCCGAAAGTGAACGCGGATCAGATGGGGAATGCCCTTGGTATGACGGTGGTTAGCAATCCGGGGACTTATTTGGGGGTCCCTGCTATTTGGGGCCGGTCGAAAAAGCGTGGTCTTGCTTATGTGAAAGGAAGAGTAATGGAAAAGCTTCAAGGGTGGAAACAAAGTACTCTATCCCGTGCCGGTAAAGAGGTTTTAATTAAGGCTGTTATCCAAGCTATTCCGGCGTACCCAATGTGCATTTTCAAATTCCCCGCCGTCGTTTGTCAGGAATTGGATGCGTTAGTGGCTGGATTTTGGTGGGGTTGCAAGGAGGGAGCCCAAAAGATTCATTGGGTCTCAAAGGAGGTTTTGGGTTTGCCAAAAGACTTGGGTGGTTTAGGCTTCAGAAACTTTATGGAATTTAATGATGCTCTGCTTGCTAAACAATGTTGGCGTTTAATCACGGAACCAGACTCGCTGTGGGCTAGGGTGATGAAAGCCCGGTATTTTCCCCATTGCTCAATATGGGATGCGAAGAAAGGTGGTCGGGCTTCTTGGGCATGGAGCAGCCTCATCTGTGGCAGGGACGTGATCAAGGAGGGTTCCCATTGGCAGATTTTGGGCGGTCAGGAGGTGAGGGTGTGGCAGGATAGGTGGCTTCCATCCTTGCCCCTTGGACATCCGGTGCCGGTTGGCCAAGTTGCGGTTACTCCCAGTTTAAGGGTCAGTGCGCTTATCTGTCCGGAGTCGGGGCGGTGGAATCTTAGCTTTTTACAGCCTTTCATATCGGGGGAGGCTTTGCAGGCTATTGAGGAGACGCCTTTGGGGGATCTAAGTCGTAATGATAGGCTTATCTGGGATTTGAGTAAGAACGGTACTTATTCGGTCAAGTCGGGTTATAGATGGCTGCAAGGTAGATCACTGGCTAGGAGGGACAAGCGTCGGCCTTCTGTTCGTGGGGTTCCCAAGGCGTTTTGGAAGGGGATTTGGAAGCTGGAGGTGCCCCCCAAGTTGCGACATTTCTTGTGGCTTACAGTGCATAATTGTCTTCCTACTCGGGAAGCCTTGTACCGACGACGGTCCTCTCTGAACTCTACTTGTCCTATTTGCTGCTGCCATGATGAAACCATTGAGCACATTTTCCTTTCTTGCTCTTGGGTTGAACCAATTTGGTTTGGTGGGGCTTTGGGGTATAAATTGGATCGTCTTTCTCTCCCGTCTTGGCTGGACTGGATTCAGAAGGTATTCTCTCCGTCTTTATGCAACTTTGGAGATACAATGTGGAGACAATCTTATATTGTTTTTACCTGTTGGTGTATTTGGAAAGCTCGTTGTGATTTTGTTTTCAATGGGATGTCTGTTAACCCTTTAAAAGTCTTGGCTGATGTTTCTGCGGCTATGAGCTCGTTTTTTGGTGCTAAGGCAATGGTTGGGGGTAGGGGAGGGGGTGACGGGAGGAGGGGTACCCAGGTGGCGCGGTGGTGTGCTCCGGCCTCTCCTTTTGTGAAGATTAATGTGGATGCTAGTTGGTCCAAGGCCTCAAAGATGGGATTTGTTGGATTGATTGCGCGGGACATGGAGAGAAAATTCGTGGCTGCAGCACGGTATGCTATATCTGCTCCTTCTGCTGCTGCAGCGGAGGCTTATGCGTTGCTGTACGGGTGCCAACTTGGTGACGAGTTGGGAGTAAGGTATGTAATTCTTGAGTCGGACTCCCTTGAAGCGATTAATTGTTTATCTAGTTCGCTGTCTAGGGGTAGCTGGGAGGCATTCCCGGTGCTGGCTCGGGTTAAACAACTGGGGGGGGGGGGAAGTTCTTTGATTGCCGATGGTCTTGGGTGCCCCGTTCTGCTAATGGCGTGGCTCACAAAATTGCATCGGGTGGTTTTACGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

652

Amino Acids

72.38

Weight (kDa)

9.58

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 313 - 410 5.3e-20 zinc-binding in reverse transcriptase
RVT_3 PF13456 524 - 601 1.8e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1520
AccB1I GGYRCC 5 cut(s) 742, 1057, 1520, 1719, 1896
AccII CGCG 3 cut(s) 92, 1534, 1627
AccIII TCCGGA 1 cut(s) 799
AciI CCGC 9 cut(s) 92, 330, 681, 761, 811, 1451, 1534, 1627, 1694
AclWI GGATC 3 cut(s) 102, 894, 1266
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 4 cut(s) 11, 323, 476, 1643
AcuI CTGAAG 1 cut(s) 445
AcyI GRCGYC 2 cut(s) 23, 875
AfaI GTAC 6 cut(s) 244, 305, 934, 1127, 1522, 1715
AfiI CCNNNNNNNGG 4 cut(s) 760, 777, 806, 1837
AgsI TTSAA 5 cut(s) 227, 322, 1220, 1405, 1778
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 1 cut(s) 1524
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 7 cut(s) 223, 293, 825, 1051, 1385, 1461, 1818
AluI AGCT 7 cut(s) 223, 293, 825, 1051, 1385, 1461, 1818
Alw21I GWGCWC 3 cut(s) 1194, 1463, 1546
Alw26I GTCTC 3 cut(s) 418, 866, 1336
AlwI GGATC 3 cut(s) 102, 894, 1266
Ama87I CYCGRG 2 cut(s) 1113, 1842
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 5 cut(s) 169, 751, 1001, 1548, 1593
ApeKI GCWGC 9 cut(s) 624, 964, 1167, 1170, 1652, 1655, 1685, 1688, 1691
ApoI RAATTY 4 cut(s) 11, 323, 476, 1643
AseI ATTAAT 2 cut(s) 1569, 1785
Asp700I GAANNNNTTC 2 cut(s) 222, 1301
Asp718I GGTACC 1 cut(s) 1520
AspLEI GCGC 3 cut(s) 790, 1534, 1627
AspS9I GGNCC 4 cut(s) 154, 169, 1137, 1587
AsuC2I CCSGG 3 cut(s) 138, 559, 1832
AsuHPI GGTGA 4 cut(s) 559, 703, 1517, 1742
AvaI CYCGRG 2 cut(s) 1113, 1842
AvaII GGWCC 3 cut(s) 154, 1137, 1587
BaeGI GKGCMC 2 cut(s) 1062, 1901
BaeI ACNNNNGTAYC 2 cut(s) 1512, 1545
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 5 cut(s) 742, 1057, 1520, 1719, 1896
BanII GRGCYC 2 cut(s) 397, 1463
BbsI GAAGAC 1 cut(s) 1097
Bbv12I GWGCWC 3 cut(s) 1194, 1463, 1546
BbvI GCAGC 9 cut(s) 636, 951, 1154, 1157, 1639, 1667, 1672, 1675, 1703
BccI CCATC 5 cut(s) 94, 727, 954, 1597, 1880
BceAI ACGGC 1 cut(s) 317
BciT130I CCWGG 1 cut(s) 1526
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 3 cut(s) 138, 559, 1832
BcoDI GTCTC 3 cut(s) 418, 866, 1336
BfaI CTAG 5 cut(s) 543, 984, 1581, 1797, 1809
BfmI CTRYAG 2 cut(s) 1653, 1689
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 4 cut(s) 138, 559, 1526, 1832
Bme18I GGWCC 3 cut(s) 154, 1137, 1587
BmeT110I CYCGRG 2 cut(s) 1113, 1842
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 4 cut(s) 154, 169, 1137, 1587
BmrFI CCNGG 4 cut(s) 138, 559, 1526, 1832
BmrI ACTGGG 2 cut(s) 765, 1865
BmsI GCATC 5 cut(s) 343, 475, 577, 1567, 1942
BmuI ACTGGG 2 cut(s) 765, 1865
BoxI GACNNNNGTC 2 cut(s) 996, 1135
BpiI GAAGAC 1 cut(s) 1097
BplI GAGNNNNNCTC 2 cut(s) 1754, 1786
BpmI CTGGAG 1 cut(s) 1073
Bpu10I CCTNAGC 1 cut(s) 1476
BpuEI CTTGAG 1 cut(s) 1781
BpuMI CCSGG 3 cut(s) 138, 559, 1832
BsaHI GRCGYC 2 cut(s) 23, 875
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 6 cut(s) 112, 137, 730, 1023, 1524, 1590
BsaWI WCCGGW 2 cut(s) 739, 799
BsaXI ACNNNNNCTCC 2 cut(s) 1504, 1534
Bsc4I CCNNNNNNNGG 4 cut(s) 760, 777, 806, 1837
Bse118I RCCGGY 3 cut(s) 171, 257, 745
Bse1I ACTGG 5 cut(s) 54, 771, 984, 1292, 1860
Bse3DI GCAATG 2 cut(s) 571, 1488
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 1 cut(s) 1526
BseDI CCNNGG 6 cut(s) 112, 137, 730, 1023, 1524, 1590
BseGI GGATG 6 cut(s) 358, 592, 719, 736, 1416, 1582
BseLI CCNNNNNNNGG 4 cut(s) 760, 777, 806, 1837
BseMI GCAATG 2 cut(s) 571, 1488
BseNI ACTGG 5 cut(s) 54, 771, 984, 1292, 1860
BseRI GAGGAG 2 cut(s) 884, 1528
BseSI GKGCMC 2 cut(s) 1062, 1901
BseXI GCAGC 9 cut(s) 636, 951, 1154, 1157, 1639, 1667, 1672, 1675, 1703
BseYI CCCAGC 1 cut(s) 1818
Bsh1236I CGCG 3 cut(s) 92, 1534, 1627
Bsh1285I CGRYCG 1 cut(s) 176
BshFI GGCC 5 cut(s) 171, 753, 1003, 1550, 1595
BshNI GGYRCC 5 cut(s) 742, 1057, 1520, 1719, 1896
BsiEI CGRYCG 1 cut(s) 176
BsiHKAI GWGCWC 3 cut(s) 1194, 1463, 1546
BsiHKCI CYCGRG 2 cut(s) 1113, 1842
BslFI GGGAC 5 cut(s) 140, 154, 656, 1004, 1643
BslI CCNNNNNNNGG 4 cut(s) 760, 777, 806, 1837
BsmAI GTCTC 3 cut(s) 418, 866, 1336
BsmBI CGTCTC 1 cut(s) 866
BsmFI GGGAC 5 cut(s) 140, 154, 656, 1004, 1643
BsmI GAATGC 2 cut(s) 112, 1826
BsnI GGCC 5 cut(s) 171, 753, 1003, 1550, 1595
Bso31I GGTCTC 1 cut(s) 418
BsoBI CYCGRG 2 cut(s) 1113, 1842
Bsp1286I GDGCHC 6 cut(s) 397, 1062, 1194, 1463, 1546, 1901
Bsp13I TCCGGA 1 cut(s) 799
Bsp143I GATC 5 cut(s) 94, 648, 886, 974, 1258
BspACI CCGC 9 cut(s) 92, 330, 681, 761, 811, 1451, 1534, 1627, 1694
BspANI GGCC 5 cut(s) 171, 753, 1003, 1550, 1595
BspEI TCCGGA 1 cut(s) 799
BspFNI CGCG 3 cut(s) 92, 1534, 1627
BspMAI CTGCAG 2 cut(s) 1657, 1693
BspPI GGATC 3 cut(s) 102, 894, 1266
BspT107I GGYRCC 5 cut(s) 742, 1057, 1520, 1719, 1896
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 2 cut(s) 571, 1488
BsrFI RCCGGY 3 cut(s) 171, 257, 745
BsrI ACTGG 5 cut(s) 54, 771, 984, 1292, 1860
BssAI RCCGGY 3 cut(s) 171, 257, 745
BssECI CCNNGG 6 cut(s) 112, 137, 730, 1023, 1524, 1590
BssMI GATC 5 cut(s) 94, 648, 886, 974, 1258
BssNI GRCGYC 2 cut(s) 23, 875
BssT1I CCWWGG 4 cut(s) 112, 730, 1023, 1590
Bst2UI CCWGG 1 cut(s) 1526
Bst4CI ACNGT 5 cut(s) 124, 932, 1093, 1137, 1662
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 2 cut(s) 23, 875
BstAPI GCANNNNNTGC 1 cut(s) 1664
BstC8I GCNNGC 3 cut(s) 495, 861, 1839
BstDEI CTNAG 3 cut(s) 821, 890, 1476
BstF5I GGATG 6 cut(s) 358, 592, 719, 736, 1416, 1582
BstFNI CGCG 3 cut(s) 92, 1534, 1627
BstHHI GCGC 3 cut(s) 790, 1534, 1627
BstKTI GATC 5 cut(s) 97, 651, 889, 977, 1261
BstMAI GTCTC 3 cut(s) 418, 866, 1336
BstMBI GATC 5 cut(s) 94, 648, 886, 974, 1258
BstMCI CGRYCG 1 cut(s) 176
BstNI CCWGG 1 cut(s) 1526
BstPAI GACNNNNGTC 2 cut(s) 996, 1135
BstSCI CCNGG 4 cut(s) 136, 557, 1524, 1830
BstSFI CTRYAG 2 cut(s) 1653, 1689
BstSLI GKGCMC 2 cut(s) 1062, 1901
BstUI CGCG 3 cut(s) 92, 1534, 1627
BstV1I GCAGC 9 cut(s) 636, 951, 1154, 1157, 1639, 1667, 1672, 1675, 1703
BstV2I GAAGAC 1 cut(s) 1097
BstX2I RGATCY 1 cut(s) 886
BstYI RGATCY 1 cut(s) 886
BsuRI GGCC 5 cut(s) 171, 753, 1003, 1550, 1595
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 6 cut(s) 358, 592, 719, 736, 1416, 1582
BtsIMutI CAGTG 4 cut(s) 61, 790, 977, 1098
Cac8I GCNNGC 3 cut(s) 495, 861, 1839
CfoI GCGC 3 cut(s) 790, 1534, 1627
Cfr10I RCCGGY 3 cut(s) 171, 257, 745
Cfr13I GGNCC 4 cut(s) 154, 169, 1137, 1587
CseI GACGC 3 cut(s) 12, 883, 986
Csp6I GTAC 6 cut(s) 243, 304, 933, 1126, 1521, 1714
CviAII CATG 3 cut(s) 618, 1175, 1633
CviQI GTAC 6 cut(s) 243, 304, 933, 1126, 1521, 1714
DdeI CTNAG 3 cut(s) 821, 890, 1476
DpnI GATC 5 cut(s) 96, 650, 888, 976, 1260
DpnII GATC 5 cut(s) 94, 648, 886, 974, 1258
DraI TTTAAA 1 cut(s) 1428
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
Ecl136II GAGCTC 1 cut(s) 1461
Eco130I CCWWGG 4 cut(s) 112, 730, 1023, 1590
Eco147I AGGCCT 1 cut(s) 1595
Eco24I GRGCYC 2 cut(s) 397, 1463
Eco31I GGTCTC 1 cut(s) 418
Eco47I GGWCC 3 cut(s) 154, 1137, 1587
Eco53kI GAGCTC 1 cut(s) 1461
Eco57I CTGAAG 1 cut(s) 445
Eco88I CYCGRG 2 cut(s) 1113, 1842
EcoICRI GAGCTC 1 cut(s) 1461
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 1524
EcoT14I CCWWGG 4 cut(s) 112, 730, 1023, 1590
EcoT38I GRGCYC 2 cut(s) 397, 1463
ErhI CCWWGG 4 cut(s) 112, 730, 1023, 1590
Esp3I CGTCTC 1 cut(s) 866
FaeI CATG 3 cut(s) 621, 1178, 1636
FaqI GGGAC 5 cut(s) 140, 154, 656, 1004, 1643
FatI CATG 3 cut(s) 617, 1174, 1632
FauI CCCGC 2 cut(s) 337, 1620
FbaI TGATCA 1 cut(s) 648
FokI GGATG 6 cut(s) 365, 599, 706, 723, 1423, 1589
FriOI GRGCYC 2 cut(s) 397, 1463
FspBI CTAG 5 cut(s) 543, 984, 1581, 1797, 1809
GlaI GCGC 3 cut(s) 789, 1533, 1626
GsaI CCCAGC 1 cut(s) 1822
GsuI CTGGAG 1 cut(s) 1073
HaeIII GGCC 5 cut(s) 171, 753, 1003, 1550, 1595
HgaI GACGC 3 cut(s) 12, 883, 986
HhaI GCGC 3 cut(s) 790, 1534, 1627
Hin1I GRCGYC 2 cut(s) 23, 875
Hin1II CATG 3 cut(s) 621, 1178, 1636
Hin6I GCGC 3 cut(s) 788, 1532, 1625
HinP1I GCGC 3 cut(s) 788, 1532, 1625
HincII GTYRAC 1 cut(s) 1420
HindII GTYRAC 1 cut(s) 1420
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 7 cut(s) 403, 530, 803, 817, 1291, 1763, 1769
HpaI GTTAAC 1 cut(s) 1420
HphI GGTGA 4 cut(s) 559, 703, 1517, 1742
Hpy166II GTNNAC 2 cut(s) 88, 1420
Hpy188I TCNGA 6 cut(s) 81, 99, 464, 1146, 1296, 1768
Hpy188III TCNNGA 5 cut(s) 344, 686, 800, 1115, 1760
Hpy8I GTNNAC 2 cut(s) 88, 1420
Hpy99I CGWCG 4 cut(s) 338, 1002, 1134, 1137
HpyAV CCTTC 5 cut(s) 28, 1014, 1030, 1291, 1689
HpyCH4III ACNGT 5 cut(s) 124, 932, 1093, 1137, 1662
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 9 cut(s) 315, 384, 859, 967, 1096, 1320, 1655, 1691, 1933
HpyF3I CTNAG 3 cut(s) 821, 890, 1476
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 2 cut(s) 23, 875
Hsp92II CATG 3 cut(s) 621, 1178, 1636
HspAI GCGC 3 cut(s) 788, 1532, 1625
KflI GGGWCCC 1 cut(s) 154
Kpn2I TCCGGA 1 cut(s) 799
KpnI GGTACC 1 cut(s) 1524
Ksp22I TGATCA 1 cut(s) 648
KspAI GTTAAC 1 cut(s) 1420
Kzo9I GATC 5 cut(s) 94, 648, 886, 974, 1258
LmnI GCTCC 4 cut(s) 392, 621, 1549, 1681
Lsp1109I GCAGC 9 cut(s) 636, 951, 1154, 1157, 1639, 1667, 1672, 1675, 1703
LweI GCATC 5 cut(s) 343, 475, 577, 1567, 1942
MaeI CTAG 5 cut(s) 543, 984, 1581, 1797, 1809
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 763, 1505, 1730
MalI GATC 5 cut(s) 96, 650, 888, 976, 1260
MboI GATC 5 cut(s) 94, 648, 886, 974, 1258
MboII GAAGA 4 cut(s) 219, 604, 1097, 1576
MflI RGATCY 1 cut(s) 886
MhlI GDGCHC 6 cut(s) 397, 1062, 1194, 1463, 1546, 1901
MlsI TGGCCA 1 cut(s) 753
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 4 cut(s) 524, 812, 1763, 1772
MmeI TCCRAC 2 cut(s) 1594, 1746
Mox20I TGGCCA 1 cut(s) 753
MroI TCCGGA 1 cut(s) 799
MroXI GAANNNNTTC 2 cut(s) 222, 1301
MscI TGGCCA 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 1 cut(s) 1694
MspR9I CCNGG 4 cut(s) 138, 559, 1526, 1832
Mva1269I GAATGC 2 cut(s) 112, 1826
MvaI CCWGG 1 cut(s) 1526
MvnI CGCG 3 cut(s) 92, 1534, 1627
NciI CCSGG 3 cut(s) 138, 559, 1832
NdeII GATC 5 cut(s) 94, 648, 886, 974, 1258
NlaIII CATG 3 cut(s) 621, 1178, 1636
NmuCI GTSAC 2 cut(s) 1505, 1730
PacI TTAATTAA 1 cut(s) 276
PceI AGGCCT 1 cut(s) 1595
PctI GAATGC 2 cut(s) 112, 1826
PdmI GAANNNNTTC 2 cut(s) 222, 1301
PfeI GAWTC 3 cut(s) 403, 817, 1291
PleI GAGTC 4 cut(s) 524, 811, 1763, 1771
PpsI GAGTC 4 cut(s) 524, 811, 1763, 1771
PpuMI RGGWCCY 1 cut(s) 154
PshAI GACNNNNGTC 2 cut(s) 996, 1135
PshBI ATTAAT 2 cut(s) 1569, 1785
Psp124BI GAGCTC 1 cut(s) 1463
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 1524
PspFI CCCAGC 1 cut(s) 1818
PspGI CCWGG 1 cut(s) 1524
PspPI GGNCC 4 cut(s) 154, 169, 1137, 1587
PspPPI RGGWCCY 1 cut(s) 154
PstI CTGCAG 2 cut(s) 1657, 1693
PsuI RGATCY 1 cut(s) 886
RsaI GTAC 6 cut(s) 244, 305, 934, 1127, 1522, 1715
RsaNI GTAC 6 cut(s) 243, 304, 933, 1126, 1521, 1714
SacI GAGCTC 1 cut(s) 1463
Sau3AI GATC 5 cut(s) 94, 648, 886, 974, 1258
Sau96I GGNCC 4 cut(s) 154, 169, 1137, 1587
ScaI AGTACT 1 cut(s) 244
SchI GAGTC 4 cut(s) 524, 812, 1763, 1772
ScrFI CCNGG 4 cut(s) 138, 559, 1526, 1832
SduI GDGCHC 6 cut(s) 397, 1062, 1194, 1463, 1546, 1901
SfaNI GCATC 5 cut(s) 343, 475, 577, 1567, 1942
SfcI CTRYAG 2 cut(s) 1653, 1689
SinI GGWCC 3 cut(s) 154, 1137, 1587
SmlI CTYRAG 1 cut(s) 1760
SmoI CTYRAG 1 cut(s) 1760
SseBI AGGCCT 1 cut(s) 1595
SsiI CCGC 9 cut(s) 92, 330, 681, 761, 811, 1451, 1534, 1627, 1694
SspMI CTAG 5 cut(s) 543, 984, 1581, 1797, 1809
SstI GAGCTC 1 cut(s) 1463
StuI AGGCCT 1 cut(s) 1595
StyD4I CCNGG 4 cut(s) 136, 557, 1524, 1830
StyI CCWWGG 4 cut(s) 112, 730, 1023, 1590
TaaI ACNGT 5 cut(s) 124, 932, 1093, 1137, 1662
TaiI ACGT 1 cut(s) 648
TaqI TCGA 1 cut(s) 176
TaqII GACCGA 1 cut(s) 931
TatI WGTACW 1 cut(s) 242
TauI GCSGC 1 cut(s) 1454
TfiI GAWTC 3 cut(s) 403, 817, 1291
TscAI CASTG 4 cut(s) 61, 790, 984, 1098
TseFI GTSAC 2 cut(s) 1505, 1730
TseI GCWGC 9 cut(s) 624, 964, 1167, 1170, 1652, 1655, 1685, 1688, 1691
Tsp45I GTSAC 2 cut(s) 1505, 1730
TspDTI ATGAA 4 cut(s) 395, 566, 829, 1194
TspGWI ACGGA 2 cut(s) 536, 1299
TspRI CASTG 4 cut(s) 61, 790, 984, 1098
VpaK11BI GGWCC 3 cut(s) 154, 1137, 1587
VspI ATTAAT 2 cut(s) 1569, 1785
XapI RAATTY 4 cut(s) 11, 323, 476, 1643
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmnI GAANNNNTTC 2 cut(s) 222, 1301
XspI CTAG 5 cut(s) 543, 984, 1581, 1797, 1809
ZrmI AGTACT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.