Rmu_sc0004329.1_g000010

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004329.1
OG0000194
Physical Location & Seq
Forward (+)
46460 .. 47191
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004329.1_g000010.1.cds

Sequence Viewer

Length: 732 bp
atgcaaagattgatgtgccacctcctcaaagtagatgtcaaggtcaaccctgggacttaccttggtctccccaccttttggggaaggtcaaagagtgaggctctgacctttgttaaggaaagggtggcaaacaagatagacgggtggaaacagaagacttttacccaagtcgggaaagaagttctagtaaaatcagttgcgatggcggtccctatgtatcctatgacttgtttcagatttcctaaagaagtttgtgaagatactaatgcagccctgggtaacttttggtggggaacttcggagtttggtaataaattgcattggaaaagttgggataaattagggaaacctaaagaggtggggggactgggtttcagaaacctccatcactttaatcttgccttcatagctaaacaggcttggcggctaatccaggatccagactccctatgggataaagtcctcaaagcacggtactacccaaattgtgactttgcggtggctacaaaaggctacagggcctcttggggctggtcaagtgtactagaagctagggacttcatcactcagaattgctggtggcaagtcatcactggctctacgattaatatttggactgattattggcttcctcaaccgagtaattgtcggacccctgtactgggtcttatcctaaccatctgtgctattcctaataatgctcccatcatggttgatgaaatcattgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

243

Amino Acids

27.9

Weight (kDa)

9.13

Isoelectric Point (pI)

23.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 78
AciI CCGC 3 cut(s) 206, 424, 497
AclWI GGATC 2 cut(s) 431, 444
AfaI GTAC 3 cut(s) 476, 543, 660
AfiI CCNNNNNNNGG 4 cut(s) 78, 171, 661, 662
AjnI CCWGG 3 cut(s) 49, 273, 432
AluBI AGCT 2 cut(s) 410, 551
AluI AGCT 2 cut(s) 410, 551
Alw26I GTCTC 1 cut(s) 71
AlwI GGATC 2 cut(s) 431, 444
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 269
ArsI GACNNNNNNTTYG 2 cut(s) 21, 53
AseI ATTAAT 1 cut(s) 606
AspS9I GGNCC 3 cut(s) 208, 519, 651
AvaII GGWCC 2 cut(s) 208, 651
BamHI GGATCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 281
BccI CCATC 4 cut(s) 196, 393, 686, 713
BciT130I CCWGG 3 cut(s) 51, 275, 434
BciVI GTATCC 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 4 cut(s) 185, 545, 552, 730
BfmI CTRYAG 1 cut(s) 514
BfuI GTATCC 1 cut(s) 228
BisI GCNGC 2 cut(s) 270, 425
BlsI GCNGC 2 cut(s) 271, 426
Bme1390I CCNGG 3 cut(s) 51, 275, 434
Bme18I GGWCC 2 cut(s) 208, 651
BmgT120I GGNCC 3 cut(s) 208, 519, 651
BmiI GGNNCC 3 cut(s) 210, 438, 653
BmrFI CCNGG 3 cut(s) 51, 275, 434
BmrI ACTGGG 2 cut(s) 377, 671
BmuI ACTGGG 2 cut(s) 377, 671
BpiI GAAGAC 1 cut(s) 161
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 49, 50, 61, 273, 274
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 171, 661, 662
Bse1I ACTGG 3 cut(s) 372, 598, 666
BseBI CCWGG 3 cut(s) 51, 275, 434
BseDI CCNNGG 5 cut(s) 49, 50, 61, 273, 274
BseLI CCNNNNNNNGG 4 cut(s) 78, 171, 661, 662
BseMII CTCAG 1 cut(s) 581
BseNI ACTGG 3 cut(s) 372, 598, 666
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 521
BslFI GGGAC 4 cut(s) 67, 194, 378, 569
BslI CCNNNNNNNGG 4 cut(s) 78, 171, 661, 662
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 4 cut(s) 67, 194, 378, 569
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 436
BspACI CCGC 3 cut(s) 206, 424, 497
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 580
BspLI GGNNCC 3 cut(s) 210, 438, 653
BspPI GGATC 2 cut(s) 431, 444
BspTNI GGTCTC 1 cut(s) 71
BsrI ACTGG 3 cut(s) 372, 598, 666
BssECI CCNNGG 5 cut(s) 49, 50, 61, 273, 274
BssMI GATC 1 cut(s) 436
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 3 cut(s) 51, 275, 434
Bst4CI ACNGT 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 567
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 2 cut(s) 407, 416
BstNI CCWGG 3 cut(s) 51, 275, 434
BstSCI CCNGG 3 cut(s) 49, 273, 432
BstSFI CTRYAG 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuI GTATCC 1 cut(s) 228
BsuRI GGCC 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 215
BtsIMutI CAGTG 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 208, 519, 651
Csp6I GTAC 3 cut(s) 475, 542, 659
CviAII CATG 1 cut(s) 709
CviQI GTAC 3 cut(s) 475, 542, 659
DdeI CTNAG 1 cut(s) 567
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 208, 651
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 3 cut(s) 49, 273, 432
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 1 cut(s) 712
FaiI YATR 5 cut(s) 215, 224, 407, 451, 710
FaqI GGGAC 4 cut(s) 67, 194, 378, 569
FatI CATG 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 270, 425
Fsp4HI GCNGC 2 cut(s) 270, 425
FspBI CTAG 4 cut(s) 185, 545, 552, 730
GluI GCNGC 2 cut(s) 270, 425
HaeIII GGCC 1 cut(s) 521
Hin1II CATG 1 cut(s) 712
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 443
Hpy166II GTNNAC 2 cut(s) 46, 542
Hpy188I TCNGA 6 cut(s) 105, 236, 301, 377, 570, 651
Hpy188III TCNNGA 2 cut(s) 172, 440
Hpy8I GTNNAC 2 cut(s) 46, 542
HpyAV CCTTC 2 cut(s) 78, 412
HpyCH4III ACNGT 1 cut(s) 474
HpyCH4V TGCA 3 cut(s) 4, 269, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 407, 416
HpyF3I CTNAG 1 cut(s) 567
Hsp92II CATG 1 cut(s) 712
Kzo9I GATC 1 cut(s) 436
LmnI GCTCC 1 cut(s) 706
Lsp1109I GCAGC 1 cut(s) 281
MaeI CTAG 4 cut(s) 185, 545, 552, 730
MaeIII GTNAC 2 cut(s) 278, 488
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 166, 269
MflI RGATCY 1 cut(s) 436
MluCI AATT 5 cut(s) 314, 338, 484, 571, 643
MlyI GAGTC 1 cut(s) 437
MmeI TCCRAC 1 cut(s) 629
MnlI CCTC 8 cut(s) 32, 35, 91, 349, 392, 473, 532, 642
MseI TTAA 3 cut(s) 114, 393, 606
MspR9I CCNGG 3 cut(s) 51, 275, 434
MvaI CCWGG 3 cut(s) 51, 275, 434
MwoI GCNNNNNNNGC 2 cut(s) 407, 416
NdeII GATC 1 cut(s) 436
NlaIII CATG 1 cut(s) 712
NlaIV GGNNCC 3 cut(s) 210, 438, 653
NmuCI GTSAC 1 cut(s) 488
PasI CCCWGGG 2 cut(s) 50, 274
PflMI CCANNNNNTGG 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 2 cut(s) 271, 426
PleI GAGTC 1 cut(s) 437
PpsI GAGTC 1 cut(s) 437
PshBI ATTAAT 1 cut(s) 606
Psp6I CCWGG 3 cut(s) 49, 273, 432
PspGI CCWGG 3 cut(s) 49, 273, 432
PspN4I GGNNCC 3 cut(s) 210, 438, 653
PspPI GGNCC 3 cut(s) 208, 519, 651
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 3 cut(s) 476, 543, 660
RsaNI GTAC 3 cut(s) 475, 542, 659
SaqAI TTAA 3 cut(s) 114, 393, 606
SatI GCNGC 2 cut(s) 270, 425
Sau3AI GATC 1 cut(s) 436
Sau96I GGNCC 3 cut(s) 208, 519, 651
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 3 cut(s) 51, 275, 434
SfcI CTRYAG 1 cut(s) 514
SinI GGWCC 2 cut(s) 208, 651
Sse9I AATT 5 cut(s) 314, 338, 484, 571, 643
SsiI CCGC 3 cut(s) 206, 424, 497
SspI AATATT 1 cut(s) 610
SspMI CTAG 4 cut(s) 185, 545, 552, 730
StyD4I CCNGG 3 cut(s) 49, 273, 432
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 474
TasI AATT 5 cut(s) 314, 338, 484, 571, 643
TatI WGTACW 2 cut(s) 541, 658
TauI GCSGC 1 cut(s) 427
Tru1I TTAA 3 cut(s) 114, 393, 606
Tru9I TTAA 3 cut(s) 114, 393, 606
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 488
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 394, 550, 732
TspRI CASTG 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 78
VpaK11BI GGWCC 2 cut(s) 208, 651
VspI ATTAAT 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XspI CTAG 4 cut(s) 185, 545, 552, 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.