Rmu_ssc0000151.1_g000016

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000151.1
OG0000194
Physical Location & Seq
Forward (+)
58267 .. 58926
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000151.1_g000016.1.cds

Sequence Viewer

Length: 399 bp
atggaaacccggggtggggatttctcaccgacccgaggattaaggcaaggggatcccatatccccttatcctttcctcattgtcagcgagattctatccttaaagaatagaggcactaataaccccaaggcttacttgggactccccagtttttggggaagatccaagattgaggcattggcttttataaaggagagggtcgcaaccaagattgatgggtggaaacaaaagactctatcacaggctgggaaagaagtcctagtgaaatcggtagctatggctgttcttatgtatcccatgacatgcttcaaattccccaaaggaatctgcaacgacatcaatgttgccctcgacaacttttggtgtggaaattcagagatgggcaacaaaatacactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

132

Amino Acids

14.7

Weight (kDa)

9.51

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AccB7I CCANNNNNTGG 1 cut(s) 153
AclWI GGATC 3 cut(s) 47, 60, 156
AcsI RAATTY 2 cut(s) 311, 370
AfiI CCNNNNNNNGG 4 cut(s) 15, 16, 35, 153
AgsI TTSAA 1 cut(s) 310
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
AlwI GGATC 3 cut(s) 47, 60, 156
Ama87I CYCGRG 2 cut(s) 9, 33
ApoI RAATTY 2 cut(s) 311, 370
AsuC2I CCSGG 2 cut(s) 10, 11
AsuHPI GGTGA 1 cut(s) 18
AvaI CYCGRG 2 cut(s) 9, 33
BamHI GGATCC 1 cut(s) 52
BccI CCATC 2 cut(s) 209, 373
BciVI GTATCC 1 cut(s) 303
BcnI CCSGG 2 cut(s) 10, 11
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 10, 11
BmeT110I CYCGRG 2 cut(s) 9, 33
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 2 cut(s) 10, 11
BmrI ACTGGG 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 141
BpuMI CCSGG 2 cut(s) 10, 11
BsaJI CCNNGG 4 cut(s) 9, 10, 34, 126
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 16, 35, 153
Bse1I ACTGG 1 cut(s) 147
BseDI CCNNGG 4 cut(s) 9, 10, 34, 126
BseLI CCNNNNNNNGG 4 cut(s) 15, 16, 35, 153
BseNI ACTGG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 245
BsiHKCI CYCGRG 2 cut(s) 9, 33
BsiSI CCGG 1 cut(s) 10
BslFI GGGAC 1 cut(s) 153
BslI CCNNNNNNNGG 4 cut(s) 15, 16, 35, 153
BsmFI GGGAC 1 cut(s) 153
BsoBI CYCGRG 2 cut(s) 9, 33
Bsp143I GATC 2 cut(s) 52, 161
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 3 cut(s) 47, 60, 156
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 4 cut(s) 9, 10, 34, 126
BssMI GATC 2 cut(s) 52, 161
BssT1I CCWWGG 1 cut(s) 126
BstKTI GATC 2 cut(s) 55, 164
BstMBI GATC 2 cut(s) 52, 161
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 2 cut(s) 8, 9
BstX2I RGATCY 2 cut(s) 52, 161
BstYI RGATCY 2 cut(s) 52, 161
BsuI GTATCC 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 394
Cfr9I CCCGGG 1 cut(s) 9
CviAII CATG 2 cut(s) 298, 303
CviJI RGCY 5 cut(s) 131, 182, 245, 275, 281
CviKI_1 RGCY 5 cut(s) 131, 182, 245, 275, 281
DpnI GATC 2 cut(s) 54, 163
DpnII GATC 2 cut(s) 52, 161
Eco130I CCWWGG 1 cut(s) 126
Eco88I CYCGRG 2 cut(s) 9, 33
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 301, 306
FaiI YATR 6 cut(s) 59, 188, 278, 290, 299, 304
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 153
FatI CATG 2 cut(s) 297, 302
FspBI CTAG 1 cut(s) 260
GsaI CCCAGC 1 cut(s) 249
HapII CCGG 1 cut(s) 10
Hin1II CATG 2 cut(s) 301, 306
HinfI GANTC 4 cut(s) 91, 141, 232, 324
HpaII CCGG 1 cut(s) 10
HphI GGTGA 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 330
Hsp92II CATG 2 cut(s) 301, 306
Kzo9I GATC 2 cut(s) 52, 161
LpnPI CCDG 4 cut(s) 23, 160, 227, 231
MaeI CTAG 1 cut(s) 260
MalI GATC 2 cut(s) 54, 163
MboI GATC 2 cut(s) 52, 161
MboII GAAGA 1 cut(s) 171
MflI RGATCY 2 cut(s) 52, 161
MluCI AATT 2 cut(s) 311, 370
MlyI GAGTC 2 cut(s) 135, 226
MnlI CCTC 6 cut(s) 29, 86, 104, 166, 189, 359
MseI TTAA 2 cut(s) 41, 101
MspI CCGG 1 cut(s) 10
MspR9I CCNGG 2 cut(s) 10, 11
NciI CCSGG 2 cut(s) 10, 11
NdeII GATC 2 cut(s) 52, 161
NlaIII CATG 2 cut(s) 301, 306
NlaIV GGNNCC 1 cut(s) 54
NspI RCATGY 1 cut(s) 306
PfeI GAWTC 2 cut(s) 91, 324
PflMI CCANNNNNTGG 1 cut(s) 153
PleI GAGTC 2 cut(s) 135, 226
PpsI GAGTC 2 cut(s) 135, 226
PsiI TTATAA 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 245
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 2 cut(s) 52, 161
SaqAI TTAA 2 cut(s) 41, 101
Sau3AI GATC 2 cut(s) 52, 161
SchI GAGTC 2 cut(s) 135, 226
ScrFI CCNGG 2 cut(s) 10, 11
SetI ASST 1 cut(s) 277
SmaI CCCGGG 1 cut(s) 11
Sse9I AATT 2 cut(s) 311, 370
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 8, 9
StyI CCWWGG 1 cut(s) 126
TaqI TCGA 1 cut(s) 351
TasI AATT 2 cut(s) 311, 370
TfiI GAWTC 2 cut(s) 91, 324
Tru1I TTAA 2 cut(s) 41, 101
Tru9I TTAA 2 cut(s) 41, 101
TspMI CCCGGG 1 cut(s) 9
Van91I CCANNNNNTGG 1 cut(s) 153
XapI RAATTY 2 cut(s) 311, 370
XceI RCATGY 1 cut(s) 306
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmaI CCCGGG 1 cut(s) 9
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.