ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 630 |
| AciI | CCGC | 1 cut(s) | 87 |
| AclWI | GGATC | 3 cut(s) | 49, 62, 386 |
| AcoI | YGGCCR | 1 cut(s) | 251 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 72, 501 |
| AgsI | TTSAA | 2 cut(s) | 170, 259 |
| AluBI | AGCT | 2 cut(s) | 200, 338 |
| AluI | AGCT | 2 cut(s) | 200, 338 |
| Alw21I | GWGCWC | 1 cut(s) | 494 |
| Alw26I | GTCTC | 1 cut(s) | 216 |
| AlwI | GGATC | 3 cut(s) | 49, 62, 386 |
| AoxI | GGCC | 3 cut(s) | 251, 371, 423 |
| AspS9I | GGNCC | 1 cut(s) | 423 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AsuII | TTCGAA | 1 cut(s) | 462 |
| BamHI | GGATCC | 1 cut(s) | 54 |
| BanII | GRGCYC | 1 cut(s) | 78 |
| BbsI | GAAGAC | 1 cut(s) | 524 |
| Bbv12I | GWGCWC | 1 cut(s) | 494 |
| BccI | CCATC | 4 cut(s) | 14, 65, 260, 503 |
| BceAI | ACGGC | 1 cut(s) | 238 |
| BciVI | GTATCC | 1 cut(s) | 610 |
| BcoDI | GTCTC | 1 cut(s) | 216 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BfuI | GTATCC | 1 cut(s) | 610 |
| BmgT120I | GGNCC | 1 cut(s) | 423 |
| BmiI | GGNNCC | 1 cut(s) | 56 |
| BmsI | GCATC | 1 cut(s) | 181 |
| BpiI | GAAGAC | 1 cut(s) | 524 |
| Bpu10I | CCTNAGC | 1 cut(s) | 594 |
| Bpu14I | TTCGAA | 1 cut(s) | 462 |
| BsaI | GGTCTC | 1 cut(s) | 216 |
| BsaJI | CCNNGG | 3 cut(s) | 66, 374, 545 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 72, 501 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| Bse3DI | GCAATG | 1 cut(s) | 317 |
| BseDI | CCNNGG | 3 cut(s) | 66, 374, 545 |
| BseGI | GGATG | 3 cut(s) | 76, 82, 604 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 72, 501 |
| BseMI | GCAATG | 1 cut(s) | 317 |
| BseMII | CTCAG | 1 cut(s) | 543 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BshFI | GGCC | 3 cut(s) | 253, 373, 425 |
| BsiHKAI | GWGCWC | 1 cut(s) | 494 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 72, 501 |
| BsmAI | GTCTC | 1 cut(s) | 216 |
| BsmI | GAATGC | 1 cut(s) | 300 |
| BsnI | GGCC | 3 cut(s) | 253, 373, 425 |
| Bso31I | GGTCTC | 1 cut(s) | 216 |
| Bsp119I | TTCGAA | 1 cut(s) | 462 |
| Bsp1286I | GDGCHC | 2 cut(s) | 78, 494 |
| Bsp143I | GATC | 2 cut(s) | 54, 378 |
| Bsp19I | CCATGG | 1 cut(s) | 545 |
| BspACI | CCGC | 1 cut(s) | 87 |
| BspANI | GGCC | 3 cut(s) | 253, 373, 425 |
| BspCNI | CTCAG | 1 cut(s) | 544 |
| BspLI | GGNNCC | 1 cut(s) | 56 |
| BspPI | GGATC | 3 cut(s) | 49, 62, 386 |
| BspT104I | TTCGAA | 1 cut(s) | 462 |
| BspTNI | GGTCTC | 1 cut(s) | 216 |
| BsrDI | GCAATG | 1 cut(s) | 317 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| BssECI | CCNNGG | 3 cut(s) | 66, 374, 545 |
| BssMI | GATC | 2 cut(s) | 54, 378 |
| BssNAI | GTATAC | 1 cut(s) | 631 |
| BssT1I | CCWWGG | 3 cut(s) | 66, 374, 545 |
| Bst1107I | GTATAC | 1 cut(s) | 631 |
| Bst4CI | ACNGT | 1 cut(s) | 637 |
| BstBI | TTCGAA | 1 cut(s) | 462 |
| BstDEI | CTNAG | 2 cut(s) | 552, 594 |
| BstDSI | CCRYGG | 1 cut(s) | 545 |
| BstF5I | GGATG | 3 cut(s) | 76, 82, 604 |
| BstKTI | GATC | 2 cut(s) | 57, 381 |
| BstMAI | GTCTC | 1 cut(s) | 216 |
| BstMBI | GATC | 2 cut(s) | 54, 378 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 206, 297, 579 |
| BstV2I | GAAGAC | 1 cut(s) | 524 |
| BstX2I | RGATCY | 2 cut(s) | 54, 378 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 369 |
| BstYI | RGATCY | 2 cut(s) | 54, 378 |
| BstZ17I | GTATAC | 1 cut(s) | 631 |
| BsuI | GTATCC | 1 cut(s) | 610 |
| BsuRI | GGCC | 3 cut(s) | 253, 373, 425 |
| BtgI | CCRYGG | 1 cut(s) | 545 |
| BtsCI | GGATG | 3 cut(s) | 76, 82, 604 |
| BtsIMutI | CAGTG | 1 cut(s) | 633 |
| Cfr13I | GGNCC | 1 cut(s) | 423 |
| CviAII | CATG | 2 cut(s) | 288, 546 |
| CviJI | RGCY | 8 cut(s) | 76, 162, 200, 209, 253, 338, 373, 425 |
| CviKI_1 | RGCY | 8 cut(s) | 76, 162, 200, 209, 253, 338, 373, 425 |
| DdeI | CTNAG | 2 cut(s) | 552, 594 |
| DpnI | GATC | 2 cut(s) | 56, 380 |
| DpnII | GATC | 2 cut(s) | 54, 378 |
| EaeI | YGGCCR | 1 cut(s) | 251 |
| Eco130I | CCWWGG | 3 cut(s) | 66, 374, 545 |
| Eco24I | GRGCYC | 1 cut(s) | 78 |
| Eco31I | GGTCTC | 1 cut(s) | 216 |
| EcoT14I | CCWWGG | 3 cut(s) | 66, 374, 545 |
| EcoT22I | ATGCAT | 1 cut(s) | 317 |
| EcoT38I | GRGCYC | 1 cut(s) | 78 |
| ErhI | CCWWGG | 3 cut(s) | 66, 374, 545 |
| FaeI | CATG | 2 cut(s) | 291, 549 |
| FatI | CATG | 2 cut(s) | 287, 545 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FblI | GTMKAC | 1 cut(s) | 630 |
| FokI | GGATG | 3 cut(s) | 69, 83, 611 |
| FriOI | GRGCYC | 1 cut(s) | 78 |
| FspBI | CTAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 3 cut(s) | 253, 373, 425 |
| Hin1II | CATG | 2 cut(s) | 291, 549 |
| HindIII | AAGCTT | 1 cut(s) | 336 |
| HinfI | GANTC | 2 cut(s) | 185, 515 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy166II | GTNNAC | 1 cut(s) | 631 |
| Hpy188I | TCNGA | 3 cut(s) | 124, 190, 409 |
| Hpy188III | TCNNGA | 1 cut(s) | 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 631 |
| HpyAV | CCTTC | 1 cut(s) | 453 |
| HpyCH4III | ACNGT | 1 cut(s) | 637 |
| HpyCH4V | TGCA | 3 cut(s) | 116, 300, 315 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 206, 297, 579 |
| HpyF3I | CTNAG | 2 cut(s) | 552, 594 |
| Hsp92II | CATG | 2 cut(s) | 291, 549 |
| Kzo9I | GATC | 2 cut(s) | 54, 378 |
| LmnI | GCTCC | 1 cut(s) | 497 |
| LpnPI | CCDG | 3 cut(s) | 136, 367, 599 |
| LweI | GCATC | 1 cut(s) | 181 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeIII | GTNAC | 3 cut(s) | 59, 137, 269 |
| MalI | GATC | 2 cut(s) | 56, 380 |
| MboI | GATC | 2 cut(s) | 54, 378 |
| MboII | GAAGA | 3 cut(s) | 245, 524, 527 |
| MfeI | CAATTG | 1 cut(s) | 216 |
| MflI | RGATCY | 2 cut(s) | 54, 378 |
| MhlI | GDGCHC | 2 cut(s) | 78, 494 |
| MluCI | AATT | 2 cut(s) | 216, 261 |
| MnlI | CCTC | 2 cut(s) | 414, 505 |
| Mph1103I | ATGCAT | 1 cut(s) | 317 |
| MseI | TTAA | 2 cut(s) | 180, 522 |
| MslI | CAYNNNNRTG | 1 cut(s) | 310 |
| MunI | CAATTG | 1 cut(s) | 216 |
| Mva1269I | GAATGC | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 206, 297, 579 |
| NcoI | CCATGG | 1 cut(s) | 545 |
| NdeII | GATC | 2 cut(s) | 54, 378 |
| NlaIII | CATG | 2 cut(s) | 291, 549 |
| NlaIV | GGNNCC | 1 cut(s) | 56 |
| NmuCI | GTSAC | 2 cut(s) | 137, 269 |
| NsiI | ATGCAT | 1 cut(s) | 317 |
| NspV | TTCGAA | 1 cut(s) | 462 |
| PctI | GAATGC | 1 cut(s) | 300 |
| PfeI | GAWTC | 2 cut(s) | 185, 515 |
| PspN4I | GGNNCC | 1 cut(s) | 56 |
| PspPI | GGNCC | 1 cut(s) | 423 |
| PsuI | RGATCY | 2 cut(s) | 54, 378 |
| RseI | CAYNNNNRTG | 1 cut(s) | 310 |
| SaqAI | TTAA | 2 cut(s) | 180, 522 |
| Sau3AI | GATC | 2 cut(s) | 54, 378 |
| Sau96I | GGNCC | 1 cut(s) | 423 |
| SduI | GDGCHC | 2 cut(s) | 78, 494 |
| SetI | ASST | 4 cut(s) | 53, 175, 202, 340 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SfuI | TTCGAA | 1 cut(s) | 462 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 310 |
| Sse9I | AATT | 2 cut(s) | 216, 261 |
| SsiI | CCGC | 1 cut(s) | 87 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyI | CCWWGG | 3 cut(s) | 66, 374, 545 |
| TaaI | ACNGT | 1 cut(s) | 637 |
| TaqI | TCGA | 1 cut(s) | 462 |
| TaqII | GACCGA | 1 cut(s) | 273 |
| TasI | AATT | 2 cut(s) | 216, 261 |
| TfiI | GAWTC | 2 cut(s) | 185, 515 |
| Tru1I | TTAA | 2 cut(s) | 180, 522 |
| Tru9I | TTAA | 2 cut(s) | 180, 522 |
| TscAI | CASTG | 1 cut(s) | 640 |
| TseFI | GTSAC | 2 cut(s) | 137, 269 |
| Tsp45I | GTSAC | 2 cut(s) | 137, 269 |
| TspDTI | ATGAA | 4 cut(s) | 71, 246, 347, 414 |
| TspGWI | ACGGA | 1 cut(s) | 47 |
| TspRI | CASTG | 1 cut(s) | 640 |
| XmiI | GTMKAC | 1 cut(s) | 630 |
| XspI | CTAG | 1 cut(s) | 96 |
| Zsp2I | ATGCAT | 1 cut(s) | 317 |