FvH4_3g10391

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000194
Physical Location & Seq
Forward (+)
6090444 .. 6091088
645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g10391.t1

Sequence Viewer

Length: 645 bp
ATGGCTGGGAGGGAAACTCTTATCAAAGCAGTGGCTCAAGCTGTTCCTACCTTCCCTATGCATTGTTTTAAATTTCCAGTCACTCTATGCAATGAGCTTGATGCGATGATGGCTAATTTTTGGTGGGGGCAAAAGAAGGATGAGAAAAAAATTTATTGGAAGAGTTGGGATTTTCTCGGCCAGCCTAAAGATTATGGTGGTTTGGGCTTTAGAAATCTAAATGAGTTTAACATCTCGCTCTTGGCTAAACAAGTATGGAGGCTCCATTCTGATCCTGATTCTTTATGTGCTCAGATTTTAAAAGGAATTTACTATCCTAACTCTGATATCCTGAATGCCGGAAAGGGTTCTCGTGCTTCTTGGGCATGGAGTAGCCTCTTAGACGGTAAAGGCTTAATTGTTGATGGGGCAAGATGGCAGGTTGGAAATGGGGAGCTGATTAATATTTGGGCAGACAAGTGGATTCCTTCTTCAATTAATGGCTTTTTGCGACCTCTGCTCCCTGTGAATGGCTCTAGACCCCACATGGTGAGAGACCTAATCGATTGGGACACTAGGAGTTGGAAGCTGGATATGATCAATGACCTAATCTCGGGGGATGATCAATTGGACATTGAGTTGATAAGCTGGGAGATCAGTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

215

Amino Acids

24.43

Weight (kDa)

5.92

Isoelectric Point (pI)

28.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 3 cut(s) 71, 150, 306
AdeI CACNNNGTG 1 cut(s) 529
AfiI CCNNNNNNNGG 2 cut(s) 509, 592
AgsI TTSAA 1 cut(s) 474
AluBI AGCT 5 cut(s) 41, 97, 436, 568, 627
AluI AGCT 5 cut(s) 41, 97, 436, 568, 627
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 528
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 592
AoxI GGCC 1 cut(s) 178
ApoI RAATTY 3 cut(s) 71, 150, 306
AseI ATTAAT 2 cut(s) 441, 477
Asp700I GAANNNNTTC 1 cut(s) 346
AsuHPI GGTGA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 592
BauI CACGAG 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 3 cut(s) 103, 398, 408
BclI TGATCA 2 cut(s) 576, 601
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 516, 555
BfuAI ACCTGC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 592
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 1 cut(s) 91
BplI GAGNNNNNCTC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 528
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 509, 592
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 543
BseGI GGATG 2 cut(s) 145, 604
BseLI CCNNNNNNNGG 2 cut(s) 509, 592
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 77
BseYI CCCAGC 2 cut(s) 5, 627
BshFI GGCC 1 cut(s) 180
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 592
BsiSI CCGG 1 cut(s) 339
BslFI GGGAC 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 509, 592
BsmAI GTCTC 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 563
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 528
BsoBI CYCGRG 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 4 cut(s) 271, 576, 601, 633
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 304
BspDI ATCGAT 1 cut(s) 543
BspLI GGNNCC 1 cut(s) 263
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 528
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 77
BssMI GATC 4 cut(s) 271, 576, 601, 633
BssSI CACGAG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 351
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 291, 379
BstF5I GGATG 2 cut(s) 145, 604
BstKTI GATC 4 cut(s) 274, 579, 604, 636
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 4 cut(s) 271, 576, 601, 633
BstMWI GCNNNNNNNGC 3 cut(s) 110, 362, 496
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 1 cut(s) 180
BsuTUI ATCGAT 1 cut(s) 543
BtgZI GCGATG 1 cut(s) 119
BtsCI GGATG 2 cut(s) 145, 604
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 543
CviAII CATG 2 cut(s) 366, 526
DdeI CTNAG 2 cut(s) 291, 379
DpnI GATC 4 cut(s) 273, 578, 603, 635
DpnII GATC 4 cut(s) 271, 576, 601, 633
DraI TTTAAA 2 cut(s) 70, 300
DraIII CACNNNGTG 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 528
Eco32I GATATC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 328
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 2 cut(s) 369, 529
FaiI YATR 9 cut(s) 59, 88, 195, 256, 286, 367, 527, 575, 643
FaqI GGGAC 1 cut(s) 563
FatI CATG 2 cut(s) 365, 525
FbaI TGATCA 2 cut(s) 576, 601
FokI GGATG 2 cut(s) 152, 611
FspBI CTAG 2 cut(s) 516, 555
GsaI CCCAGC 2 cut(s) 9, 631
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 339
Hin1II CATG 2 cut(s) 369, 529
HinfI GANTC 2 cut(s) 278, 463
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 541
Hpy188I TCNGA 3 cut(s) 271, 294, 325
Hpy188III TCNNGA 3 cut(s) 275, 331, 516
HpyAV CCTTC 3 cut(s) 61, 130, 477
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 61, 90
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 362, 496
HpyF3I CTNAG 2 cut(s) 291, 379
Hsp92II CATG 2 cut(s) 369, 529
Ksp22I TGATCA 2 cut(s) 576, 601
Kzo9I GATC 4 cut(s) 271, 576, 601, 633
LmnI GCTCC 3 cut(s) 267, 433, 504
LpnPI CCDG 9 cut(s) 90, 194, 288, 344, 352, 404, 516, 554, 613
LweI GCATC 1 cut(s) 91
MaeI CTAG 2 cut(s) 516, 555
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 273, 578, 603, 635
MboI GATC 4 cut(s) 271, 576, 601, 633
MboII GAAGA 2 cut(s) 172, 462
MfeI CAATTG 1 cut(s) 605
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 7 cut(s) 71, 115, 150, 306, 396, 474, 605
MmeI TCCRAC 2 cut(s) 403, 542
MnlI CCTC 4 cut(s) 3, 252, 386, 504
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 346
MseI TTAA 6 cut(s) 69, 228, 299, 395, 441, 477
MspI CCGG 1 cut(s) 339
MunI CAATTG 1 cut(s) 605
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 110, 362, 496
NdeII GATC 4 cut(s) 271, 576, 601, 633
NlaIII CATG 2 cut(s) 369, 529
NlaIV GGNNCC 1 cut(s) 263
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 1 cut(s) 79
NsiI ATGCAT 1 cut(s) 63
PctI GAATGC 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 346
PfeI GAWTC 2 cut(s) 278, 463
PshBI ATTAAT 2 cut(s) 441, 477
PspFI CCCAGC 2 cut(s) 5, 627
PspN4I GGNNCC 1 cut(s) 263
SaqAI TTAA 6 cut(s) 69, 228, 299, 395, 441, 477
Sau3AI GATC 4 cut(s) 271, 576, 601, 633
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 7 cut(s) 71, 115, 150, 306, 396, 474, 605
SspI AATATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 516, 555
TaaI ACNGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 543
TasI AATT 7 cut(s) 71, 115, 150, 306, 396, 474, 605
TfiI GAWTC 2 cut(s) 278, 463
Tru1I TTAA 6 cut(s) 69, 228, 299, 395, 441, 477
Tru9I TTAA 6 cut(s) 69, 228, 299, 395, 441, 477
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspRI CASTG 1 cut(s) 36
VspI ATTAAT 2 cut(s) 441, 477
XapI RAATTY 3 cut(s) 71, 150, 306
XbaI TCTAGA 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 346
XspI CTAG 2 cut(s) 516, 555
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.