Prupe.7G008600_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000194
Physical Location & Seq
Reverse (-)
1182371 .. 1187678
5308 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G008600.1

Sequence Viewer

Length: 2013 bp
ATGGTCCTTGTTTGTAAGCCAAGTGGTAACAGACACATCAAGCTTTTCAAGTTTGGGGCTCACTGGATTAAGGAGGAGGAGAGCTATCAAATCGTGAATAGGTGCTGGCAATCCCAAGTTGGTGGCTCCTGGATTAAGAGGTGGCATAAAAAATTGAGAATGTGCAAGGGTCAGCTTCAGGGGTGGAGTAGATCGAAGTTTAAGAACAATCGGCACGAGGTCGAGGTGAAAGAAGCGGTTTTCCAAATGGGGGGTATGAAAGCCCCGGGGCCGAACGGGTTTCAAGGAATGTTCTACCAGACATATTGGGACACCATTCTTGCTGAGGTGCAGGGGACAATGAAAGATTTTTTTGAAATTCAAGATAATATTATCTTGGCTCACGAGGTATTCCATTATCTGAAACTAAGGAAATCGAAGAAGGTGTTCGAAATGGGAGTAAAACTTGATATGAATAAAGCTTATGATTGTGTGGAGTGGGATTTCTTGGAGGCAATGATGATTCGAATGGGGTTCACTGTGAGGTGGGTGGAGTTGATTATGAGCTGTATCAGAACTGGAGACCCTCTCTCCCCTTACCTGTTCTTACTAGTGAGTGAGGTTCTCTCCTTATTAGTGCTTAAGGCGTGCGAATCTGGTTTTTTGCAAGGCATCAAATTAAGAAGGTCAGGACCTACCCTCTCCCATCTCATGTTTACCGATGATACTTTAATCTTCCTAAGGGCCACTGAGCAGAATTATACAAACATGGTGCAGCTTTTAAATGCCTATTGTAGGGCGTCTGGACAACAAATTAGTTTGGCCAAATCAACTATTTTCTTTAGCCCCAATACTCCATCAAATTTGGGCCACCAAATCTGCCATATCCTTGCGATGCCTCGGCGTGAGGCATTGTTGTACATTAAGGAGAAGATTATGTCTAAAATCCAAGGTTGGAAACAACAACTTCTTTTGCAGGCATGTGGAGAGGTTCTGTTGAAAGCAATGGTTCAAGCAGTTCTTGCTTATCCAATGCACATTTTTGTGTTCCCTTCAAAAATCTGTAAGGAAATTGATTTGTTAATGAATTCTTTGAGTCTCTCAAAACAATCTGGCGGTATGGGCTTCCGTGACCTTCATGAATTTAATTTGGCATTGATAGCTAAGCAATATTGGAGACTCATCACCGAACCTGACTCTCTTTGGGCAAAAACTTTGAAGGATCTTTATTTTCCAAATGAGAACTTTCTTCAAGCCAGAAAAGGTAGTCGGGCTTCCTGGGCATGGGCTAGTTTACTACAAGGAGGGGATATTCTGCTACAAGGCGCTCACTGGCAGGTTCTGGATGGCTCTCAGGTTAGGCTTTGGGTTGATAATTGGATTCCAGGTTTTGAGGGTGGAAGGCTGCAACCTGCGACTAATGGTATGGTGGATTTAGAGCAAACAATCAATTCCATTATTAATTTTGATACTTGTAATTGGGACCTCAACCCCATTCGACACCTGATTGATGACAGGGCTGCTGAAGCCATTGCCAAAATTAAATTTGCAAGCCCGAGAAATAAAGATAGATTGGTATGGCTTTTCGAAAAGAATGGATGCTACTCTGTAAAATCTGGATATCACTGGCTGCATAGCTCCTCAACTTCTCGTCAGCAAAATAGACCTTCCTCCTCTCGTGATGTTGATGTGGCTTGCTGGAAATTTGTTTGGCGAATAACAGCTCCCCCGAAAATTTGTAACTTTATTTGGAGAGCTGTTCGAAATGGTATTGCCACGAAGGAGAACTTATTTCGGAGGAAGATGAGCACTTCCCTTATTTGCTCCATTTGCGGTGAATTTGTCGAATCTGTTGAACACTTGCTCTTGCTTTGTCCTTGGGTTGAACCTGTGTGGTTTGGTGGCCAATTGAATATCAAGATTGACAAGGGAGCTATCACAAGTGCTTGTAGAAGAACAAGTTCACTGAACGCGATCCAACACATGAGTTACAGCGTGGAAGTCTTTACTCACATGTCAAACTGGAACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

671

Amino Acids

77.12

Weight (kDa)

9.3

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1306, 1399
AccII CGCG 1 cut(s) 1952
AciI CCGC 3 cut(s) 236, 1095, 1812
AclWI GGATC 2 cut(s) 1209, 1948
AcoI YGGCCR 2 cut(s) 801, 1882
AcsI RAATTY 8 cut(s) 357, 841, 1066, 1121, 1523, 1682, 1713, 1817
AcuI CTGAAG 2 cut(s) 161, 1524
AcyI GRCGYC 1 cut(s) 779
AfaI GTAC 1 cut(s) 899
AfiI CCNNNNNNNGG 3 cut(s) 250, 774, 1263
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 1992
AhlI ACTAGT 1 cut(s) 589
AjnI CCWGG 3 cut(s) 128, 1256, 1363
Alw21I GWGCWC 1 cut(s) 1790
Alw26I GTCTC 3 cut(s) 555, 1082, 1150
AlwI GGATC 2 cut(s) 1209, 1948
AlwNI CAGNNNCTG 1 cut(s) 1321
Ama87I CYCGRG 2 cut(s) 265, 1534
AoxI GGCC 5 cut(s) 269, 723, 801, 847, 1882
ApeKI GCWGC 4 cut(s) 754, 1384, 1499, 1609
ApoI RAATTY 8 cut(s) 357, 841, 1066, 1121, 1523, 1682, 1713, 1817
AseI ATTAAT 1 cut(s) 1440
Asp700I GAANNNNTTC 2 cut(s) 425, 1939
AspLEI GCGC 1 cut(s) 1307
AspS9I GGNCC 6 cut(s) 4, 269, 671, 723, 847, 1462
AsuC2I CCSGG 2 cut(s) 266, 267
AsuHPI GGTGA 3 cut(s) 238, 1156, 1826
AsuII TTCGAA 4 cut(s) 429, 505, 1566, 1741
AvaI CYCGRG 2 cut(s) 265, 1534
AvaII GGWCC 3 cut(s) 4, 671, 1462
AxyI CCTNAGG 1 cut(s) 719
BalI TGGCCA 2 cut(s) 803, 1884
BanII GRGCYC 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 1237, 1269
BauI CACGAG 3 cut(s) 215, 383, 1656
Bbv12I GWGCWC 1 cut(s) 1790
BbvCI CCTCAGC 1 cut(s) 324
BbvI GCAGC 4 cut(s) 766, 1371, 1486, 1596
BccI CCATC 3 cut(s) 693, 844, 1319
BciT130I CCWGG 3 cut(s) 130, 1258, 1365
BcnI CCSGG 2 cut(s) 266, 267
BcoDI GTCTC 3 cut(s) 555, 1082, 1150
BcuI ACTAGT 1 cut(s) 589
BfaI CTAG 2 cut(s) 590, 1269
BfoI RGCGCY 1 cut(s) 1308
BfrI CTTAAG 1 cut(s) 620
BfuAI ACCTGC 2 cut(s) 1306, 1399
BisI GCNGC 4 cut(s) 755, 1385, 1500, 1610
BlpI GCTNAGC 1 cut(s) 1143
BlsI GCNGC 4 cut(s) 756, 1386, 1501, 1611
Bme1390I CCNGG 5 cut(s) 130, 266, 267, 1258, 1365
Bme18I GGWCC 3 cut(s) 4, 671, 1462
BmeT110I CYCGRG 2 cut(s) 265, 1534
BmgT120I GGNCC 6 cut(s) 4, 269, 671, 723, 847, 1462
BmiI GGNNCC 3 cut(s) 127, 270, 1463
BmrFI CCNGG 5 cut(s) 130, 266, 267, 1258, 1365
BmsI GCATC 3 cut(s) 660, 864, 1568
BplI GAGNNNNNCTC 4 cut(s) 552, 584, 590, 622
BpmI CTGGAG 1 cut(s) 579
Bpu10I CCTNAGC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 1143
Bpu14I TTCGAA 4 cut(s) 429, 505, 1566, 1741
BpuMI CCSGG 2 cut(s) 266, 267
BsaHI GRCGYC 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 555
BsaJI CCNNGG 7 cut(s) 264, 265, 266, 878, 928, 1257, 1856
BsaXI ACNNNNNCTCC 2 cut(s) 554, 584
Bsc4I CCNNNNNNNGG 3 cut(s) 250, 774, 1263
Bse1I ACTGG 5 cut(s) 68, 562, 1316, 1610, 2006
Bse21I CCTNAGG 1 cut(s) 719
Bse3DI GCAATG 3 cut(s) 501, 990, 1509
BseBI CCWGG 3 cut(s) 130, 1258, 1365
BseDI CCNNGG 7 cut(s) 264, 265, 266, 878, 928, 1257, 1856
BseGI GGATG 2 cut(s) 1330, 1583
BseLI CCNNNNNNNGG 3 cut(s) 250, 774, 1263
BseMI GCAATG 3 cut(s) 501, 990, 1509
BseMII CTCAG 3 cut(s) 315, 720, 1346
BseNI ACTGG 5 cut(s) 68, 562, 1316, 1610, 2006
BseRI GAGGAG 4 cut(s) 89, 92, 1609, 1642
BseXI GCAGC 4 cut(s) 766, 1371, 1486, 1596
BsgI GTGCAG 2 cut(s) 350, 773
Bsh1236I CGCG 1 cut(s) 1952
BshFI GGCC 5 cut(s) 271, 725, 803, 849, 1884
BsiHKAI GWGCWC 1 cut(s) 1790
BsiHKCI CYCGRG 2 cut(s) 265, 1534
BsiSI CCGG 1 cut(s) 266
BslFI GGGAC 3 cut(s) 323, 349, 1475
BslI CCNNNNNNNGG 3 cut(s) 250, 774, 1263
BsmAI GTCTC 3 cut(s) 555, 1082, 1150
BsmFI GGGAC 3 cut(s) 323, 349, 1475
BsnI GGCC 5 cut(s) 271, 725, 803, 849, 1884
Bso31I GGTCTC 1 cut(s) 555
BsoBI CYCGRG 2 cut(s) 265, 1534
Bsp119I TTCGAA 4 cut(s) 429, 505, 1566, 1741
Bsp1286I GDGCHC 2 cut(s) 61, 1790
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 3 cut(s) 191, 1201, 1953
Bsp1720I GCTNAGC 1 cut(s) 1143
BspACI CCGC 3 cut(s) 236, 1095, 1812
BspANI GGCC 5 cut(s) 271, 725, 803, 849, 1884
BspCNI CTCAG 3 cut(s) 316, 721, 1345
BspFNI CGCG 1 cut(s) 1952
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 3 cut(s) 127, 270, 1463
BspMI ACCTGC 2 cut(s) 1306, 1399
BspPI GGATC 2 cut(s) 1209, 1948
BspT104I TTCGAA 4 cut(s) 429, 505, 1566, 1741
BspTI CTTAAG 1 cut(s) 620
BspTNI GGTCTC 1 cut(s) 555
BsrDI GCAATG 3 cut(s) 501, 990, 1509
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 5 cut(s) 68, 562, 1316, 1610, 2006
BssECI CCNNGG 7 cut(s) 264, 265, 266, 878, 928, 1257, 1856
BssMI GATC 3 cut(s) 191, 1201, 1953
BssNI GRCGYC 1 cut(s) 779
BssSI CACGAG 3 cut(s) 215, 383, 1656
BssT1I CCWWGG 2 cut(s) 928, 1856
Bst2BI CACGAG 3 cut(s) 215, 383, 1656
Bst2UI CCWGG 3 cut(s) 130, 1258, 1365
Bst4CI ACNGT 1 cut(s) 520
BstACI GRCGYC 1 cut(s) 779
BstAFI CTTAAG 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 1001
BstAUI TGTACA 1 cut(s) 897
BstBI TTCGAA 4 cut(s) 429, 505, 1566, 1741
BstC8I GCNNGC 5 cut(s) 107, 628, 957, 1531, 1675
BstDEI CTNAG 6 cut(s) 324, 407, 719, 729, 1143, 1332
BstENI CCTNNNNNAGG 1 cut(s) 772
BstF5I GGATG 2 cut(s) 1330, 1583
BstFNI CGCG 1 cut(s) 1952
BstH2I RGCGCY 1 cut(s) 1308
BstHHI GCGC 1 cut(s) 1307
BstKTI GATC 3 cut(s) 194, 1204, 1956
BstMAI GTCTC 3 cut(s) 555, 1082, 1150
BstMBI GATC 3 cut(s) 191, 1201, 1953
BstMWI GCNNNNNNNGC 6 cut(s) 1001, 1101, 1139, 1259, 1505, 1809
BstNI CCWGG 3 cut(s) 130, 1258, 1365
BstNSI RCATGY 2 cut(s) 963, 1996
BstSCI CCNGG 5 cut(s) 128, 264, 265, 1256, 1363
BstUI CGCG 1 cut(s) 1952
BstV1I GCAGC 4 cut(s) 766, 1371, 1486, 1596
BstX2I RGATCY 1 cut(s) 1201
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 1201
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 5 cut(s) 271, 725, 803, 849, 1884
BtgZI GCGATG 1 cut(s) 887
BtsCI GGATG 2 cut(s) 1330, 1583
BtsIMutI CAGTG 6 cut(s) 61, 516, 726, 1309, 1603, 1943
BveI ACCTGC 2 cut(s) 1306, 1399
Cac8I GCNNGC 5 cut(s) 107, 628, 957, 1531, 1675
CaiI CAGNNNCTG 1 cut(s) 1321
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 1 cut(s) 1307
Cfr13I GGNCC 6 cut(s) 4, 269, 671, 723, 847, 1462
Cfr9I CCCGGG 1 cut(s) 265
CseI GACGC 1 cut(s) 768
Csp6I GTAC 1 cut(s) 898
CviAII CATG 7 cut(s) 691, 748, 960, 1118, 1263, 1963, 1993
CviQI GTAC 1 cut(s) 898
DdeI CTNAG 6 cut(s) 324, 407, 719, 729, 1143, 1332
DpnI GATC 3 cut(s) 193, 1203, 1955
DpnII GATC 3 cut(s) 191, 1201, 1953
DraI TTTAAA 1 cut(s) 762
EaeI YGGCCR 2 cut(s) 801, 1882
Eco130I CCWWGG 2 cut(s) 928, 1856
Eco24I GRGCYC 1 cut(s) 61
Eco31I GGTCTC 1 cut(s) 555
Eco32I GATATC 1 cut(s) 1601
Eco47I GGWCC 3 cut(s) 4, 671, 1462
Eco57I CTGAAG 2 cut(s) 161, 1524
Eco81I CCTNAGG 1 cut(s) 719
Eco88I CYCGRG 2 cut(s) 265, 1534
EcoNI CCTNNNNNAGG 1 cut(s) 772
EcoO109I RGGNCCY 2 cut(s) 671, 1462
EcoRI GAATTC 1 cut(s) 1066
EcoRII CCWGG 3 cut(s) 128, 1256, 1363
EcoRV GATATC 1 cut(s) 1601
EcoT14I CCWWGG 2 cut(s) 928, 1856
EcoT38I GRGCYC 1 cut(s) 61
ErhI CCWWGG 2 cut(s) 928, 1856
FaeI CATG 7 cut(s) 694, 751, 963, 1121, 1266, 1966, 1996
FalI AAGNNNNNCTT 4 cut(s) 984, 1016, 1751, 1783
FaqI GGGAC 3 cut(s) 323, 349, 1475
FatI CATG 7 cut(s) 690, 747, 959, 1117, 1262, 1962, 1992
Fnu4HI GCNGC 4 cut(s) 755, 1385, 1500, 1610
FokI GGATG 2 cut(s) 1337, 1590
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 4 cut(s) 755, 1385, 1500, 1610
FspBI CTAG 2 cut(s) 590, 1269
GlaI GCGC 1 cut(s) 1306
GluI GCNGC 4 cut(s) 755, 1385, 1500, 1610
GsuI CTGGAG 1 cut(s) 579
HaeII RGCGCY 1 cut(s) 1308
HaeIII GGCC 5 cut(s) 271, 725, 803, 849, 1884
HapII CCGG 1 cut(s) 266
HgaI GACGC 1 cut(s) 768
HhaI GCGC 1 cut(s) 1307
Hin1I GRCGYC 1 cut(s) 779
Hin1II CATG 7 cut(s) 694, 751, 963, 1121, 1266, 1966, 1996
Hin6I GCGC 1 cut(s) 1305
HinP1I GCGC 1 cut(s) 1305
HindIII AAGCTT 2 cut(s) 41, 459
HinfI GANTC 7 cut(s) 502, 632, 1075, 1158, 1175, 1360, 1826
HpaII CCGG 1 cut(s) 266
HphI GGTGA 3 cut(s) 238, 1156, 1826
Hpy166II GTNNAC 4 cut(s) 516, 696, 1274, 1943
Hpy188I TCNGA 3 cut(s) 402, 554, 1776
Hpy8I GTNNAC 4 cut(s) 516, 696, 1274, 1943
HpyAV CCTTC 8 cut(s) 415, 657, 1041, 1124, 1192, 1374, 1656, 1753
HpyCH4III ACNGT 1 cut(s) 520
HpyCH4V TGCA 9 cut(s) 165, 331, 646, 754, 955, 1015, 1387, 1529, 1612
HpyF10VI GCNNNNNNNGC 6 cut(s) 1001, 1101, 1139, 1259, 1505, 1809
HpyF3I CTNAG 6 cut(s) 324, 407, 719, 729, 1143, 1332
Hsp92I GRCGYC 1 cut(s) 779
Hsp92II CATG 7 cut(s) 694, 751, 963, 1121, 1266, 1966, 1996
HspAI GCGC 1 cut(s) 1305
Kzo9I GATC 3 cut(s) 191, 1201, 1953
LmnI GCTCC 5 cut(s) 131, 1622, 1708, 1808, 1910
Lsp1109I GCAGC 4 cut(s) 766, 1371, 1486, 1596
LweI GCATC 3 cut(s) 660, 864, 1568
MaeI CTAG 2 cut(s) 590, 1269
MaeIII GTNAC 4 cut(s) 26, 1109, 1718, 1967
MalI GATC 3 cut(s) 193, 1203, 1955
MboI GATC 3 cut(s) 191, 1201, 1953
MboII GAAGA 6 cut(s) 430, 706, 922, 1220, 1792, 1944
MfeI CAATTG 1 cut(s) 1886
MflI RGATCY 1 cut(s) 1201
MhlI GDGCHC 2 cut(s) 61, 1790
MlsI TGGCCA 2 cut(s) 803, 1884
MluNI TGGCCA 2 cut(s) 803, 1884
MlyI GAGTC 3 cut(s) 1084, 1152, 1169
MmeI TCCRAC 2 cut(s) 914, 1981
Mox20I TGGCCA 2 cut(s) 803, 1884
MroXI GAANNNNTTC 2 cut(s) 425, 1939
MscI TGGCCA 2 cut(s) 803, 1884
MslI CAYNNNNRTG 1 cut(s) 1022
Msp20I TGGCCA 2 cut(s) 803, 1884
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 5 cut(s) 130, 266, 267, 1258, 1365
MunI CAATTG 1 cut(s) 1886
MvaI CCWGG 3 cut(s) 130, 1258, 1365
MvnI CGCG 1 cut(s) 1952
MwoI GCNNNNNNNGC 6 cut(s) 1001, 1101, 1139, 1259, 1505, 1809
NciI CCSGG 2 cut(s) 266, 267
NdeII GATC 3 cut(s) 191, 1201, 1953
NlaIII CATG 7 cut(s) 694, 751, 963, 1121, 1266, 1966, 1996
NlaIV GGNNCC 3 cut(s) 127, 270, 1463
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 1109
NspI RCATGY 2 cut(s) 963, 1996
NspV TTCGAA 4 cut(s) 429, 505, 1566, 1741
PagI TCATGA 1 cut(s) 1117
PciI ACATGT 1 cut(s) 1992
PdmI GAANNNNTTC 2 cut(s) 425, 1939
PfeI GAWTC 4 cut(s) 502, 632, 1360, 1826
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 4 cut(s) 756, 1386, 1501, 1611
PleI GAGTC 3 cut(s) 1083, 1152, 1169
PpsI GAGTC 3 cut(s) 1083, 1152, 1169
PpuMI RGGWCCY 2 cut(s) 671, 1462
PscI ACATGT 1 cut(s) 1992
PshBI ATTAAT 1 cut(s) 1440
Psp5II RGGWCCY 2 cut(s) 671, 1462
Psp6I CCWGG 3 cut(s) 128, 1256, 1363
PspGI CCWGG 3 cut(s) 128, 1256, 1363
PspN4I GGNNCC 3 cut(s) 127, 270, 1463
PspPI GGNCC 6 cut(s) 4, 269, 671, 723, 847, 1462
PspPPI RGGWCCY 2 cut(s) 671, 1462
PstNI CAGNNNCTG 1 cut(s) 1321
PsuI RGATCY 1 cut(s) 1201
RsaI GTAC 1 cut(s) 899
RsaNI GTAC 1 cut(s) 898
RseI CAYNNNNRTG 1 cut(s) 1022
SatI GCNGC 4 cut(s) 755, 1385, 1500, 1610
Sau3AI GATC 3 cut(s) 191, 1201, 1953
Sau96I GGNCC 6 cut(s) 4, 269, 671, 723, 847, 1462
SchI GAGTC 3 cut(s) 1084, 1152, 1169
ScrFI CCNGG 5 cut(s) 130, 266, 267, 1258, 1365
SduI GDGCHC 2 cut(s) 61, 1790
SfaNI GCATC 3 cut(s) 660, 864, 1568
SfuI TTCGAA 4 cut(s) 429, 505, 1566, 1741
SinI GGWCC 3 cut(s) 4, 671, 1462
SmaI CCCGGG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
SpeI ACTAGT 1 cut(s) 589
SsiI CCGC 3 cut(s) 236, 1095, 1812
SspI AATATT 2 cut(s) 370, 1151
SspMI CTAG 2 cut(s) 590, 1269
StyD4I CCNGG 5 cut(s) 128, 264, 265, 1256, 1363
StyI CCWWGG 2 cut(s) 928, 1856
TaaI ACNGT 1 cut(s) 520
TaqI TCGA 9 cut(s) 194, 222, 416, 429, 505, 1477, 1566, 1741, 1824
TatI WGTACW 1 cut(s) 897
TfiI GAWTC 4 cut(s) 502, 632, 1360, 1826
TscAI CASTG 6 cut(s) 68, 523, 733, 1316, 1610, 1950
TseFI GTSAC 1 cut(s) 1109
TseI GCWGC 4 cut(s) 754, 1384, 1499, 1609
Tsp45I GTSAC 1 cut(s) 1109
TspDTI ATGAA 6 cut(s) 272, 356, 467, 1079, 1106, 1134
TspGWI ACGGA 1 cut(s) 1097
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 6 cut(s) 68, 523, 733, 1316, 1610, 1950
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 4, 671, 1462
VspI ATTAAT 1 cut(s) 1440
XagI CCTNNNNNAGG 1 cut(s) 772
XapI RAATTY 8 cut(s) 357, 841, 1066, 1121, 1523, 1682, 1713, 1817
XceI RCATGY 2 cut(s) 963, 1996
XmaI CCCGGG 1 cut(s) 265
XmnI GAANNNNTTC 2 cut(s) 425, 1939
XspI CTAG 2 cut(s) 590, 1269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.