Rh4BG362100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000194
Physical Location & Seq
Reverse (-)
52095506 .. 52098291
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG362100.1

Sequence Viewer

Length: 585 bp
ATGGCAATGCAGACGGTGTTGGTAAAGCCGGTGGTGTCGGCACTGTTGCTAACGGCGGCAGTGCTAAAGAACTGGAATATCTCCTATATTGAGCCTTTTCTGGAGGACTCTGATATCAGGACAATAAAAGCTATCCCTATAGGTGAGGAGAATGAAGTTGACAGTCTGGTTTGGCCCCACGCAAAAAATGGTGCTTATTCAGTCAAAAGTGGCTACCACAAAATCTTCTCACCTCGGGGAAAACAGGTCAGCAACAAACCCTCCTGTTCCCACCATGTCAACAACGATATCTGGAAACTGGTCTGGCAACCAACTATGATTCCTAAGATATCAAATTTCATTTGGACGGCCATCTCAAATGCTATCTCAACCAGCTGGAATGTGTTCAAAAGGAAGATCATTCCTAACCCCATTTGTGAAATCTGTGGAGATCACCCAGAAACCACTGAACACTGCCTAGCTACTCCTCTGTCCTTGGACGTCGGCGGTGTGGTTCGGGAGCTCCCTGGGGTACATTCCAGAAAAGGCAAAAATCACCCATTTGGAAGATTGGTTGCTGGCAGTTCACAAGAAGGAGCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

194

Amino Acids

21.4

Weight (kDa)

8.9

Isoelectric Point (pI)

31.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 66 - 154 1.7e-13 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
AciI CCGC 2 cut(s) 56, 486
AcoI YGGCCR 1 cut(s) 348
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 1 cut(s) 513
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 5 cut(s) 131, 375, 461, 502, 578
AluI AGCT 5 cut(s) 131, 375, 461, 502, 578
Alw21I GWGCWC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 234
AoxI GGCC 2 cut(s) 173, 348
ApoI RAATTY 1 cut(s) 334
Asp700I GAANNNNTTC 1 cut(s) 383
AspS9I GGNCC 1 cut(s) 174
AsuHPI GGTGA 4 cut(s) 155, 222, 425, 527
AvaI CYCGRG 1 cut(s) 234
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 1 cut(s) 504
BccI CCATC 1 cut(s) 359
BceAI ACGGC 2 cut(s) 69, 363
BciT130I CCWGG 1 cut(s) 507
BfaI CTAG 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 507
BmeT110I CYCGRG 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 176
BmrFI CCNGG 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 4 cut(s) 233, 474, 505, 506
BsaXI ACNNNNNCTCC 2 cut(s) 245, 275
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 77, 303
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 507
BseDI CCNNGG 4 cut(s) 233, 474, 505, 506
BseMI GCAATG 1 cut(s) 12
BseNI ACTGG 2 cut(s) 77, 303
BseRI GAGGAG 2 cut(s) 161, 456
BshFI GGCC 2 cut(s) 175, 350
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 29
BsnI GGCC 2 cut(s) 175, 350
BsoBI CYCGRG 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 504
Bsp143I GATC 2 cut(s) 396, 430
BspACI CCGC 2 cut(s) 56, 486
BspANI GGCC 2 cut(s) 175, 350
BspLI GGNNCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 28
BsrI ACTGG 2 cut(s) 77, 303
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 233, 474, 505, 506
BssMI GATC 2 cut(s) 396, 430
BssNI GRCGYC 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 16, 45, 164
BstACI GRCGYC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 1 cut(s) 324
BstKTI GATC 2 cut(s) 399, 433
BstMBI GATC 2 cut(s) 396, 430
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 138
BsuRI GGCC 2 cut(s) 175, 350
BtsI GCAGTG 2 cut(s) 66, 451
BtsIMutI CAGTG 4 cut(s) 41, 66, 444, 451
Cac8I GCNNGC 1 cut(s) 559
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 174
Csp6I GTAC 1 cut(s) 512
CviAII CATG 1 cut(s) 275
CviQI GTAC 1 cut(s) 512
DdeI CTNAG 1 cut(s) 324
DpnI GATC 2 cut(s) 398, 432
DpnII GATC 2 cut(s) 396, 430
EaeI YGGCCR 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 474
Eco24I GRGCYC 1 cut(s) 504
Eco32I GATATC 3 cut(s) 115, 289, 330
Eco53kI GAGCTC 1 cut(s) 502
Eco88I CYCGRG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 505
EcoRV GATATC 3 cut(s) 115, 289, 330
EcoT14I CCWWGG 1 cut(s) 474
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 474
FaeI CATG 1 cut(s) 278
FaiI YATR 4 cut(s) 87, 140, 276, 317
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 57
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 458
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 175, 350
HapII CCGG 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 1 cut(s) 278
HincII GTYRAC 2 cut(s) 160, 280
HindII GTYRAC 2 cut(s) 160, 280
HinfI GANTC 2 cut(s) 107, 319
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 155, 222, 425, 527
Hpy166II GTNNAC 3 cut(s) 160, 280, 566
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 6 cut(s) 101, 118, 292, 497, 519, 582
Hpy8I GTNNAC 3 cut(s) 160, 280, 566
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 3 cut(s) 16, 45, 164
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 2 cut(s) 396, 430
LmnI GCTCC 3 cut(s) 499, 507, 575
MaeI CTAG 1 cut(s) 458
MaeII ACGT 1 cut(s) 480
MalI GATC 2 cut(s) 398, 432
MboI GATC 2 cut(s) 396, 430
MboII GAAGA 3 cut(s) 217, 406, 558
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 1 cut(s) 334
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 97, 139, 243, 271, 477
MroXI GAANNNNTTC 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 375
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 507
MvaI CCWGG 1 cut(s) 507
NdeII GATC 2 cut(s) 396, 430
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 176
PasI CCCWGGG 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 101
PpsI GAGTC 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 505
PspGI CCWGG 1 cut(s) 505
PspN4I GGNNCC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 174
PvuII CAGCTG 1 cut(s) 375
RsaI GTAC 1 cut(s) 513
RsaNI GTAC 1 cut(s) 512
SacI GAGCTC 1 cut(s) 504
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 396, 430
Sau96I GGNCC 1 cut(s) 174
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 507
SduI GDGCHC 1 cut(s) 504
SetI ASST 9 cut(s) 133, 145, 235, 249, 377, 463, 483, 504, 580
SfcI CTRYAG 1 cut(s) 138
Sse9I AATT 1 cut(s) 334
SsiI CCGC 2 cut(s) 56, 486
SspMI CTAG 1 cut(s) 458
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 505
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 16, 45, 164
TaiI ACGT 1 cut(s) 483
TasI AATT 1 cut(s) 334
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 319
TscAI CASTG 4 cut(s) 48, 66, 451, 458
TspDTI ATGAA 2 cut(s) 168, 328
TspRI CASTG 4 cut(s) 48, 66, 451, 458
XapI RAATTY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 383
XspI CTAG 1 cut(s) 458
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.