Rmu_sc0002193.1_g000025

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002193.1
OG0000194
Physical Location & Seq
Forward (+)
102582 .. 104005
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002193.1_g000025.1.cds

Sequence Viewer

Length: 888 bp
atgaactgttttcggtttccaaagtctctctgtactcaaattgcctctcaaatagcaaggttttggtggggaaataaaggagctcatggtattcattggaaaagttggcattctttaggtttctcaaaggctcaaggaggaatgggtttgcgggatttgaccgagtttaaccaagctttgttagctaaacagggatggaggattcttaccaatccgtcttctgtttgggtaatgatgcttaaacaccgttatttcccttatgtttctttcatggaggctcgtcttggttcttcaccttcttggttatgggctagtttattacatggtcaggaacttcttaaatcaaatgctctttggagagtgggaaatggtttgcatatttcagtttgggatttaaattggattcctcatatgcaggagcatcgtttaactcctccacctcgagctgattttactatttctgtctcttctttgattgactggtcttctctctcttgggatttgacatctattgctgggcatatctctgtggatcagagtcgggcaatcttagctattcctttggttaattcttctgttccagataaactgatttggtctttgaacaagtctagcaactatacagtccggtctggctactatgctgcacacctcaaatcttcccagatggtgcctcctccaaagccaaaatggttaccaccgcctccaaactatattaagataaattctgatacatcctggtcttctactgaggttggtgtggtggctattgctcgaaactgtgatggagttgtggttggtggaagtcatctttctacttcagctccatcccctctgtatgcagaagcattggccctctgcttgagtgttcatcttgctcaaaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

295

Amino Acids

32.88

Weight (kDa)

9.61

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AciI CCGC 2 cut(s) 151, 701
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 804
AfaI GTAC 1 cut(s) 34
AgsI TTSAA 1 cut(s) 604
AjnI CCWGG 1 cut(s) 737
AluBI AGCT 6 cut(s) 83, 176, 185, 446, 554, 824
AluI AGCT 6 cut(s) 83, 176, 185, 446, 554, 824
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 2 cut(s) 30, 469
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 1 cut(s) 852
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 853
AsuHPI GGTGA 1 cut(s) 285
AvaI CYCGRG 1 cut(s) 441
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 3 cut(s) 210, 477, 735
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 631
BccI CCATC 4 cut(s) 189, 661, 779, 835
BcgI CGANNNNNNTGC 2 cut(s) 404, 438
BciT130I CCWGG 1 cut(s) 739
BcoDI GTCTC 2 cut(s) 30, 469
BfaI CTAG 2 cut(s) 312, 612
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
Bme1390I CCNGG 1 cut(s) 739
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 853
BmiI GGNNCC 1 cut(s) 672
BmrFI CCNGG 1 cut(s) 739
BmsI GCATC 2 cut(s) 225, 430
BpiI GAAGAC 3 cut(s) 210, 477, 735
BpuEI CTTGAG 2 cut(s) 117, 883
BsaWI WCCGGW 1 cut(s) 627
BsaXI ACNNNNNCTCC 4 cut(s) 780, 808, 810, 838
Bse1I ACTGG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 739
BseGI GGATG 3 cut(s) 200, 734, 827
BseMII CTCAG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 2 cut(s) 423, 666
BseXI GCAGC 1 cut(s) 631
BseYI CCCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 630
BshFI GGCC 1 cut(s) 854
BshNI GGYRCC 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 628
BsmAI GTCTC 2 cut(s) 30, 469
BsmI GAATGC 1 cut(s) 109
BsnI GGCC 1 cut(s) 854
BsoBI CYCGRG 1 cut(s) 441
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 1 cut(s) 532
BspACI CCGC 2 cut(s) 151, 701
BspANI GGCC 1 cut(s) 854
BspCNI CTCAG 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 672
BspPI GGATC 1 cut(s) 540
BspT107I GGYRCC 1 cut(s) 670
BsrI ACTGG 1 cut(s) 485
BssMI GATC 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 739
Bst4CI ACNGT 4 cut(s) 8, 248, 625, 782
Bst6I CTCTTC 1 cut(s) 472
BstDEI CTNAG 2 cut(s) 550, 750
BstEII GGTNACC 1 cut(s) 693
BstF5I GGATG 3 cut(s) 200, 734, 827
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 2 cut(s) 30, 469
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 2 cut(s) 182, 551
BstNI CCWGG 1 cut(s) 739
BstPI GGTNACC 1 cut(s) 693
BstSCI CCNGG 1 cut(s) 737
BstV1I GCAGC 1 cut(s) 631
BstV2I GAAGAC 3 cut(s) 210, 477, 735
BsuRI GGCC 1 cut(s) 854
BtsCI GGATG 3 cut(s) 200, 734, 827
Cfr13I GGNCC 1 cut(s) 853
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 86, 271, 323
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 2 cut(s) 550, 750
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
DraI TTTAAA 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 472
EarI CTCTTC 1 cut(s) 472
Ecl136II GAGCTC 1 cut(s) 83
Eco24I GRGCYC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 1 cut(s) 441
Eco91I GGTNACC 1 cut(s) 693
EcoICRI GAGCTC 1 cut(s) 83
EcoO65I GGTNACC 1 cut(s) 693
EcoRII CCWGG 1 cut(s) 737
EcoT38I GRGCYC 1 cut(s) 85
FaeI CATG 3 cut(s) 89, 274, 326
FatI CATG 3 cut(s) 85, 270, 322
FauI CCCGC 1 cut(s) 144
FauNDI CATATG 1 cut(s) 411
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 3 cut(s) 207, 721, 814
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 2 cut(s) 312, 612
GluI GCNGC 1 cut(s) 645
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 1 cut(s) 854
HapII CCGG 1 cut(s) 628
Hin1II CATG 3 cut(s) 89, 274, 326
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 202, 403, 538
HpaII CCGG 1 cut(s) 628
HphI GGTGA 1 cut(s) 285
Hpy188I TCNGA 2 cut(s) 537, 730
Hpy188III TCNNGA 2 cut(s) 329, 581
HpyAV CCTTC 1 cut(s) 306
HpyCH4III ACNGT 4 cut(s) 8, 248, 625, 782
HpyCH4V TGCA 4 cut(s) 376, 415, 647, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 551
HpyF3I CTNAG 2 cut(s) 550, 750
Hsp92II CATG 3 cut(s) 89, 274, 326
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 3 cut(s) 80, 418, 829
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 2 cut(s) 225, 430
MaeI CTAG 2 cut(s) 312, 612
MaeIII GTNAC 1 cut(s) 693
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 7 cut(s) 210, 282, 459, 477, 564, 651, 735
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 5 cut(s) 39, 397, 568, 724, 883
MlyI GAGTC 1 cut(s) 547
MseI TTAA 8 cut(s) 168, 240, 339, 395, 428, 567, 717, 886
MspI CCGG 1 cut(s) 628
MspR9I CCNGG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 1 cut(s) 739
MwoI GCNNNNNNNGC 2 cut(s) 182, 551
NdeI CATATG 1 cut(s) 411
NdeII GATC 1 cut(s) 532
NlaIII CATG 3 cut(s) 89, 274, 326
NlaIV GGNNCC 1 cut(s) 672
PaeR7I CTCGAG 1 cut(s) 441
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 2 cut(s) 202, 403
PkrI GCNGC 1 cut(s) 646
PleI GAGTC 1 cut(s) 546
PpsI GAGTC 1 cut(s) 546
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 737
PspEI GGTNACC 1 cut(s) 693
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 737
PspN4I GGNNCC 1 cut(s) 672
PspPI GGNCC 1 cut(s) 853
PspXI VCTCGAGB 1 cut(s) 441
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 8 cut(s) 168, 240, 339, 395, 428, 567, 717, 886
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 853
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 1 cut(s) 739
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 2 cut(s) 225, 430
Sfr274I CTCGAG 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 441
SmiI ATTTAAAT 1 cut(s) 396
SmlI CTYRAG 3 cut(s) 132, 441, 862
SmoI CTYRAG 3 cut(s) 132, 441, 862
Sse9I AATT 5 cut(s) 39, 397, 568, 724, 883
SsiI CCGC 2 cut(s) 151, 701
SspMI CTAG 2 cut(s) 312, 612
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 1 cut(s) 737
SwaI ATTTAAAT 1 cut(s) 396
TaaI ACNGT 4 cut(s) 8, 248, 625, 782
TaqI TCGA 2 cut(s) 442, 775
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 39, 397, 568, 724, 883
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 2 cut(s) 202, 403
Tru1I TTAA 8 cut(s) 168, 240, 339, 395, 428, 567, 717, 886
Tru9I TTAA 8 cut(s) 168, 240, 339, 395, 428, 567, 717, 886
TseI GCWGC 1 cut(s) 644
TspDTI ATGAA 4 cut(s) 17, 83, 259, 860
TspGWI ACGGA 1 cut(s) 204
XapI RAATTY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 687
XhoI CTCGAG 1 cut(s) 441
XspI CTAG 2 cut(s) 312, 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.