Prupe.2G060500_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000194
Physical Location & Seq
Reverse (-)
7643619 .. 7648297
4679 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G060500.1

Sequence Viewer

Length: 2535 bp
ATGGTACGGACCGTGGATGAAGAGGCGCCTGCCCCCGGTGGTTCCTCCATCATCGACGGGAAGGCGGAATCTTACAGGCCGGAGGAGACCATTGCCCACCCGCAGCGCATGGAGTTGCCACGTGACGACAACGAGCTTGGTGGAGGCCATGAGTCAACCGTTGACCTCGATCCCCTCGATGAAATTGTTCAAAATTCTATTAATAACTTGGTTACCGATTTTTTCTCAGGCAATAGCAGATTGGAGCTCCTAAATCACACTCATATTGTCCTCATCCCAAAGATTCCCAAGCCAACGTCGGTAAACCATTTCCGACCTATTAGTTTATGCAACAACTCGTATAAGATTCTGTCTAAACTGCTGGCAAATCGTCTCAAGACCCTTCTCCCTATGCTGATAAGTCAGCATCAGAATGCCTTTATCCCGGGACGGCAGATACAAGACAATATTTTACTGGCCCACGAGGCTTTCCATTATCTCCGTCTTAAGTCTTCCAAGAAATCCTTTGAGCTGGGACTGAAACTGGACATGAATAAGGCATACGACCGGATCGAATGGGATTTCCTTGAGGCCACTCTTTGTAAGTTCGGCTTCGACAACCGTTGGGTGGAGCTGGTCATGCTGTGTGTCAAAACTATCACTTTCTCTCTGGTGCTGAATGGTTCCCCTGGCAGTCCCTTTTCCCCATCGAGGGGCCTGAGACAAGGAGATCCCTTATCTCCCTATCTTTTTCTTCTTGTCTCCGAGGTTCTTTCTCTAAATATTATCAATTCTACTGATACTGGGATGCTTAGGGGCATTAAATTAAGCAGGGGTGGTCCGGAATTATCCCACCTATTCTTTGCAGACGACTCTCTGTTTTTTCTGCAGGCTACTCCTCCGAACTGCTCGGCTCTGAAGTCCATTATCGAATGCTACTGCTCGGCGTCGGGTCAGGAGGTGGAGGCCTTGACCTATGTTCGGGACAGAATAAATTCGAAGATTGCTGGGTGGAAGCTAAAGCTATTATCTCAAGCGGGCAGGGAGGTCCTTATCAAATCGGTGGCTGCAGCTATCCCGGCCTACCCCATGTCTTGCTTTTTGCTGCTAGCCACTATATGCAATTCAATAAACGCTGATTTGGCGAGATTCTGGTGGGGCCATGATGGTAACCAGGGAAAAATCCATTGGCACTCTTGGAAGAAACTCTGCAGACCCAAAGCGGAGGGGGGCATGGGATTTCGCGATTTACAGGCTTTCAACTGGTCCCTACTTGCCAAGCAATGTTGGCGAATCCTGCGCAACCCGACTACTCTCTGGGCTAGGATTTTAAAGGCCCGCTACTTCCCCGAGTGTTCCTTCCTCGATGCTAAGAAGGGAGGGCGTGCGTCATGGGCTTGGAGCAGCCTCCTAGTCGGTCGGGATATCATCGAGAAGGGAGCTCGCTGGCAAATTGGAAATGGCCATTTAGTGAGTGTGTGGAAGGACCGCTGGTTAATGGGGTATGGCTCCGAAAAAATCTCCCCCCTCCCCTCCTGTAACCGCTTCACCCCCTTGCTGGTGGCCGATCTCATCGACGTGGGGAACAGGTCCTGGAACATCTCACACATTGAGCCCTTTATTCATCCCAGCGAGGCTATGTTAATCCGATCTACTCCTATCGGCTCCCTGGCTACTCGTGACCGGCTAGTGTGGCCGGCGGTAAAGAATGGTGACTATACTGTTAAATCCGGGTACTACCATGCCATCAATGTCTCGCCTCCTGACCCCTGTGATCGAGCTTCTTCCTCCCATGCAGTGAATTCCGACGTGTGGAAAGTTATCTGGAGGGCTCACATCACTCCCAAAATCAGGAACTTTATGTGGCGTGCGTTAACAAACTCCATTCCTACGTGCGCTAACCTCTTTGGAAGAAAGTTAGCGCGTTCTCCTACGTGCCGCTTGTGTGGTTTGTTTCCTGAGACTGTGGAGCACCTGTTACTGCTCTGTTCTTGGACGCGGGCAGTATGGTTTGGCTGCCCTTTTGGTTACACTCCGGACCTAGCATCCATTACCACATTGGATTCTTGGCTTTCTGGCTTCCTAAGAAGCTCTTTTGCCGATGGAGATCAAAGGGACTGGGGAATTTCCCTCTTCATGTTCTGCTCTTGGGAAATTTGGAAGGCTCGATGTAAGGCGATTTTCAATGATATCCGACCCTCTCCTCCCCTGGCTAAAACGGGTGTGGGGGGTATTGGAGCGGTTATTCGCGATCATAACGGCTCCTTCATCGGTGCCGCTAGTCAACCATGCAATTGTTCGTCTGCGGCTGAATGTGAAGCTAGTGCAGCGATCATGGGCCTCTCTTTTGCCTCCTCCTTTCACGTGCAGAATGTGGTTGTGGAGACTGACTGCTCTGAGCTAGTTTCTTGTGTTAAGAAGGGTTCTGCATCTGGTAACTGGAGATTCTACCCTTTCCTCGCGGAATTCCGCCGCTGGAAGCGTCCTTCATCCAATGTGACTAGAATTGGATTCTTCGTGAAGCTAACGGAGCTGCTGATGCTGCCGCCAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

845

Amino Acids

94.42

Weight (kDa)

9.01

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1280
AccB1I GGYRCC 2 cut(s) 25, 2252
AccBSI CCGCTC 1 cut(s) 2219
AccII CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
AccIII TCCGGA 2 cut(s) 820, 2014
AclWI GGATC 3 cut(s) 164, 557, 704
AcoI YGGCCR 3 cut(s) 1441, 1542, 1673
AcsI RAATTY 6 cut(s) 193, 973, 1780, 2103, 2133, 2444
AcuI CTGAAG 1 cut(s) 917
AcvI CACGTG 2 cut(s) 122, 2344
AcyI GRCGYC 2 cut(s) 26, 926
AfaI GTAC 2 cut(s) 6, 1715
AfiI CCNNNNNNNGG 9 cut(s) 35, 607, 690, 691, 692, 960, 1537, 1791, 1830
AflII CTTAAG 1 cut(s) 485
AflIII ACRYGT 1 cut(s) 1788
AgsI TTSAA 4 cut(s) 191, 1107, 1240, 2164
AjiI CACGTC 2 cut(s) 1558, 1789
AjnI CCWGG 5 cut(s) 667, 1152, 1571, 1647, 2187
AjuI GAANNNNNNNTTGG 2 cut(s) 1150, 1182
Alw21I GWGCWC 3 cut(s) 249, 1423, 1953
Alw26I GTCTC 7 cut(s) 80, 377, 694, 745, 1738, 1934, 2357
AlwI GGATC 3 cut(s) 164, 557, 704
AlwNI CAGNNNCTG 1 cut(s) 1572
Ama87I CYCGRG 2 cut(s) 424, 1328
Aor13HI TCCGGA 2 cut(s) 820, 2014
ApeKI GCWGC 9 cut(s) 103, 1046, 1049, 1084, 1383, 1995, 2306, 2512, 2521
ApoI RAATTY 6 cut(s) 193, 973, 1780, 2103, 2133, 2444
AseI ATTAAT 1 cut(s) 201
Asp700I GAANNNNTTC 2 cut(s) 186, 973
AspLEI GCGC 5 cut(s) 28, 108, 1281, 1877, 1903
AsuC2I CCSGG 5 cut(s) 36, 425, 426, 1058, 1711
AsuHPI GGTGA 2 cut(s) 1519, 1703
AsuII TTCGAA 1 cut(s) 977
AsuNHI GCTAGC 1 cut(s) 1087
AvaI CYCGRG 2 cut(s) 424, 1328
AvaII GGWCC 7 cut(s) 9, 818, 1027, 1245, 1465, 1569, 2017
BalI TGGCCA 1 cut(s) 1443
BanI GGYRCC 2 cut(s) 25, 2252
BanII GRGCYC 4 cut(s) 249, 1423, 1596, 1813
BauI CACGAG 2 cut(s) 461, 1656
BbrPI CACGTG 2 cut(s) 122, 2344
BbsI GAAGAC 1 cut(s) 483
Bbv12I GWGCWC 3 cut(s) 249, 1423, 1953
BbvI GCAGC 9 cut(s) 115, 1033, 1061, 1071, 1395, 1982, 2318, 2499, 2508
BccI CCATC 5 cut(s) 56, 694, 1139, 1733, 2075
BceAI ACGGC 2 cut(s) 446, 2254
BciT130I CCWGG 5 cut(s) 669, 1154, 1573, 1649, 2189
BcnI CCSGG 5 cut(s) 36, 425, 426, 1058, 1711
BcoDI GTCTC 7 cut(s) 80, 377, 694, 745, 1738, 1934, 2357
BfmI CTRYAG 3 cut(s) 866, 1047, 1189
BfoI RGCGCY 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 485
BglI GCCNNNNNGGC 1 cut(s) 464
Bme18I GGWCC 7 cut(s) 9, 818, 1027, 1245, 1465, 1569, 2017
BmeT110I CYCGRG 2 cut(s) 424, 1328
BmgBI CACGTC 2 cut(s) 1558, 1789
BmrI ACTGGG 2 cut(s) 792, 2107
BmsI GCATC 6 cut(s) 415, 777, 1336, 2033, 2417, 2508
BmtI GCTAGC 1 cut(s) 1091
BmuI ACTGGG 2 cut(s) 792, 2107
BpiI GAAGAC 1 cut(s) 483
BpmI CTGGAG 2 cut(s) 1825, 2440
Bpu10I CCTNAGC 1 cut(s) 791
Bpu14I TTCGAA 1 cut(s) 977
BpuEI CTTGAG 3 cut(s) 359, 587, 996
BpuMI CCSGG 5 cut(s) 36, 425, 426, 1058, 1711
BsaAI YACGTR 4 cut(s) 122, 1872, 1914, 2344
BsaBI GATNNNNATC 1 cut(s) 2085
BsaHI GRCGYC 2 cut(s) 26, 926
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 8 cut(s) 12, 34, 424, 667, 744, 1153, 1647, 2187
BsaWI WCCGGW 3 cut(s) 546, 820, 2014
BsaXI ACNNNNNCTCC 2 cut(s) 1940, 1970
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 607, 690, 691, 692, 960, 1537, 1791, 1830
Bse118I RCCGGY 2 cut(s) 1662, 1675
Bse1I ACTGG 6 cut(s) 459, 528, 787, 1247, 2102, 2423
Bse3DI GCAATG 2 cut(s) 90, 1268
Bse8I GATNNNNATC 1 cut(s) 2085
BseAI TCCGGA 2 cut(s) 820, 2014
BseBI CCWGG 5 cut(s) 669, 1154, 1573, 1649, 2189
BseDI CCNNGG 8 cut(s) 12, 34, 424, 667, 744, 1153, 1647, 2187
BseGI GGATG 6 cut(s) 22, 273, 792, 1603, 2024, 2468
BseJI GATNNNNATC 1 cut(s) 2085
BseLI CCNNNNNNNGG 9 cut(s) 35, 607, 690, 691, 692, 960, 1537, 1791, 1830
BseMI GCAATG 2 cut(s) 90, 1268
BseMII CTCAG 4 cut(s) 240, 689, 1929, 2367
BseNI ACTGG 6 cut(s) 459, 528, 787, 1247, 2102, 2423
BseRI GAGGAG 4 cut(s) 98, 867, 2172, 2323
BseXI GCAGC 9 cut(s) 115, 1033, 1061, 1071, 1395, 1982, 2318, 2499, 2508
BseYI CCCAGC 3 cut(s) 511, 986, 1607
BsgI GTGCAG 2 cut(s) 2325, 2366
Bsh1236I CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
Bsh1285I CGRYCG 2 cut(s) 547, 1399
BshNI GGYRCC 2 cut(s) 25, 2252
BsiEI CGRYCG 2 cut(s) 547, 1399
BsiHKAI GWGCWC 3 cut(s) 249, 1423, 1953
BsiHKCI CYCGRG 2 cut(s) 424, 1328
BslFI GGGAC 6 cut(s) 441, 528, 660, 977, 1231, 2108
BslI CCNNNNNNNGG 9 cut(s) 35, 607, 690, 691, 692, 960, 1537, 1791, 1830
BsmAI GTCTC 7 cut(s) 80, 377, 694, 745, 1738, 1934, 2357
BsmBI CGTCTC 1 cut(s) 377
BsmFI GGGAC 6 cut(s) 441, 528, 660, 977, 1231, 2108
BsmI GAATGC 2 cut(s) 418, 917
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 2 cut(s) 424, 1328
Bsp119I TTCGAA 1 cut(s) 977
Bsp1286I GDGCHC 5 cut(s) 249, 1423, 1596, 1813, 1953
Bsp13I TCCGGA 2 cut(s) 820, 2014
Bsp143I GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
Bsp68I TCGCGA 2 cut(s) 1224, 2229
BspCNI CTCAG 4 cut(s) 239, 690, 1930, 2368
BspEI TCCGGA 2 cut(s) 820, 2014
BspFNI CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
BspMAI CTGCAG 3 cut(s) 870, 1051, 1193
BspOI GCTAGC 1 cut(s) 1091
BspPI GGATC 3 cut(s) 164, 557, 704
BspT104I TTCGAA 1 cut(s) 977
BspT107I GGYRCC 2 cut(s) 25, 2252
BspTI CTTAAG 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 2219
BsrDI GCAATG 2 cut(s) 90, 1268
BsrFI RCCGGY 2 cut(s) 1662, 1675
BsrI ACTGG 6 cut(s) 459, 528, 787, 1247, 2102, 2423
BssAI RCCGGY 2 cut(s) 1662, 1675
BssECI CCNNGG 8 cut(s) 12, 34, 424, 667, 744, 1153, 1647, 2187
BssMI GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
BssNI GRCGYC 2 cut(s) 26, 926
BssSI CACGAG 2 cut(s) 461, 1656
Bst2BI CACGAG 2 cut(s) 461, 1656
Bst2UI CCWGG 5 cut(s) 669, 1154, 1573, 1649, 2189
Bst4CI ACNGT 5 cut(s) 13, 160, 602, 1702, 1945
Bst6I CTCTTC 2 cut(s) 15, 2117
BstACI GRCGYC 2 cut(s) 26, 926
BstAFI CTTAAG 1 cut(s) 485
BstBAI YACGTR 4 cut(s) 122, 1872, 1914, 2344
BstBI TTCGAA 1 cut(s) 977
BstDEI CTNAG 7 cut(s) 226, 698, 791, 1350, 1938, 2063, 2376
BstDSI CCRYGG 1 cut(s) 12
BstEII GGTNACC 2 cut(s) 211, 1148
BstF5I GGATG 6 cut(s) 22, 273, 792, 1603, 2024, 2468
BstFNI CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 5 cut(s) 28, 108, 1281, 1877, 1903
BstKTI GATC 9 cut(s) 172, 552, 712, 1549, 1631, 1756, 2089, 2233, 2313
BstMAI GTCTC 7 cut(s) 80, 377, 694, 745, 1738, 1934, 2357
BstMBI GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
BstMCI CGRYCG 2 cut(s) 547, 1399
BstNI CCWGG 5 cut(s) 669, 1154, 1573, 1649, 2189
BstPI GGTNACC 2 cut(s) 211, 1148
BstSFI CTRYAG 3 cut(s) 866, 1047, 1189
BstUI CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
BstV1I GCAGC 9 cut(s) 115, 1033, 1061, 1071, 1395, 1982, 2318, 2499, 2508
BstV2I GAAGAC 1 cut(s) 483
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 2 cut(s) 1558, 1789
BtsCI GGATG 6 cut(s) 22, 273, 792, 1603, 2024, 2468
BtsI GCAGTG 1 cut(s) 1782
BtsIMutI CAGTG 1 cut(s) 1782
BtuMI TCGCGA 2 cut(s) 1224, 2229
CaiI CAGNNNCTG 1 cut(s) 1572
CfoI GCGC 5 cut(s) 28, 108, 1281, 1877, 1903
Cfr10I RCCGGY 2 cut(s) 1662, 1675
Cfr9I CCCGGG 1 cut(s) 424
CpoI CGGWCCG 1 cut(s) 9
CseI GACGC 4 cut(s) 915, 1356, 1984, 2450
Csp6I GTAC 2 cut(s) 5, 1714
CspI CGGWCCG 1 cut(s) 9
CviQI GTAC 2 cut(s) 5, 1714
DdeI CTNAG 7 cut(s) 226, 698, 791, 1350, 1938, 2063, 2376
DinI GGCGCC 1 cut(s) 27
DpnI GATC 9 cut(s) 171, 551, 711, 1548, 1630, 1755, 2088, 2232, 2312
DpnII GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
DraI TTTAAA 1 cut(s) 1311
EaeI YGGCCR 3 cut(s) 1441, 1542, 1673
Eam1104I CTCTTC 2 cut(s) 15, 2117
EarI CTCTTC 2 cut(s) 15, 2117
EciI GGCGGA 2 cut(s) 80, 2438
Ecl136II GAGCTC 2 cut(s) 247, 1421
Eco147I AGGCCT 1 cut(s) 947
Eco24I GRGCYC 4 cut(s) 249, 1423, 1596, 1813
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 2 cut(s) 1405, 2170
Eco47I GGWCC 7 cut(s) 9, 818, 1027, 1245, 1465, 1569, 2017
Eco53kI GAGCTC 2 cut(s) 247, 1421
Eco57I CTGAAG 1 cut(s) 917
Eco72I CACGTG 2 cut(s) 122, 2344
Eco88I CYCGRG 2 cut(s) 424, 1328
Eco91I GGTNACC 2 cut(s) 211, 1148
EcoICRI GAGCTC 2 cut(s) 247, 1421
EcoO109I RGGNCCY 3 cut(s) 694, 1027, 1569
EcoO65I GGTNACC 2 cut(s) 211, 1148
EcoRI GAATTC 2 cut(s) 1780, 2444
EcoRII CCWGG 5 cut(s) 667, 1152, 1571, 1647, 2187
EcoRV GATATC 2 cut(s) 1405, 2170
EcoT38I GRGCYC 4 cut(s) 249, 1423, 1596, 1813
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 377
FalI AAGNNNNNCTT 6 cut(s) 488, 520, 575, 607, 2056, 2088
FaqI GGGAC 6 cut(s) 441, 528, 660, 977, 1231, 2108
FauI CCCGC 4 cut(s) 108, 1009, 1325, 1971
FokI GGATG 6 cut(s) 29, 260, 799, 1590, 2011, 2455
FriOI GRGCYC 4 cut(s) 249, 1423, 1596, 1813
FspI TGCGCA 1 cut(s) 1280
GlaI GCGC 5 cut(s) 27, 107, 1280, 1876, 1902
GsaI CCCAGC 3 cut(s) 515, 990, 1611
GsuI CTGGAG 2 cut(s) 1825, 2440
HaeII RGCGCY 1 cut(s) 29
HgaI GACGC 4 cut(s) 915, 1356, 1984, 2450
HhaI GCGC 5 cut(s) 28, 108, 1281, 1877, 1903
Hin1I GRCGYC 2 cut(s) 26, 926
Hin6I GCGC 5 cut(s) 26, 106, 1279, 1875, 1901
HinP1I GCGC 5 cut(s) 26, 106, 1279, 1875, 1901
HincII GTYRAC 4 cut(s) 156, 163, 1854, 2264
HindII GTYRAC 4 cut(s) 156, 163, 1854, 2264
HpaI GTTAAC 1 cut(s) 1854
HphI GGTGA 2 cut(s) 1519, 1703
Hpy166II GTNNAC 5 cut(s) 156, 163, 304, 1854, 2264
Hpy8I GTNNAC 5 cut(s) 156, 163, 304, 1854, 2264
Hpy99I CGWCG 5 cut(s) 59, 301, 931, 1559, 1790
HpyCH4III ACNGT 5 cut(s) 13, 160, 602, 1702, 1945
HpyCH4IV ACGT 7 cut(s) 121, 296, 1557, 1788, 1871, 1913, 2343
HpyF3I CTNAG 7 cut(s) 226, 698, 791, 1350, 1938, 2063, 2376
HpySE526I ACGT 7 cut(s) 121, 296, 1557, 1788, 1871, 1913, 2343
Hsp92I GRCGYC 2 cut(s) 26, 926
HspAI GCGC 5 cut(s) 26, 106, 1279, 1875, 1901
KasI GGCGCC 1 cut(s) 25
Kpn2I TCCGGA 2 cut(s) 820, 2014
KroI GCCGGC 1 cut(s) 1675
KroNI GCCGGC 1 cut(s) 1677
KspAI GTTAAC 1 cut(s) 1854
Kzo9I GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
Lsp1109I GCAGC 9 cut(s) 115, 1033, 1061, 1071, 1395, 1982, 2318, 2499, 2508
LweI GCATC 6 cut(s) 415, 777, 1336, 2033, 2417, 2508
MaeII ACGT 7 cut(s) 121, 296, 1557, 1788, 1871, 1913, 2343
MalI GATC 9 cut(s) 171, 551, 711, 1548, 1630, 1755, 2088, 2232, 2312
MbiI CCGCTC 1 cut(s) 2219
MboI GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
MboII GAAGA 9 cut(s) 32, 483, 725, 991, 1192, 1755, 1902, 2104, 2485
MfeI CAATTG 1 cut(s) 2272
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 5 cut(s) 249, 1423, 1596, 1813, 1953
MlsI TGGCCA 1 cut(s) 1443
MluNI TGGCCA 1 cut(s) 1443
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 2 cut(s) 161, 845
MmeI TCCRAC 3 cut(s) 337, 1809, 2197
Mox20I TGGCCA 1 cut(s) 1443
MroI TCCGGA 2 cut(s) 820, 2014
MroNI GCCGGC 1 cut(s) 1675
MroXI GAANNNNTTC 2 cut(s) 186, 973
MscI TGGCCA 1 cut(s) 1443
MslI CAYNNNNRTG 2 cut(s) 411, 1556
Msp20I TGGCCA 1 cut(s) 1443
MspA1I CMGCKG 2 cut(s) 1470, 2454
MspCI CTTAAG 1 cut(s) 485
MunI CAATTG 1 cut(s) 2272
Mva1269I GAATGC 2 cut(s) 418, 917
MvaI CCWGG 5 cut(s) 669, 1154, 1573, 1649, 2189
MvnI CGCG 5 cut(s) 1224, 1903, 1978, 2229, 2441
NaeI GCCGGC 1 cut(s) 1677
NarI GGCGCC 1 cut(s) 26
NciI CCSGG 5 cut(s) 36, 425, 426, 1058, 1711
NdeII GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
NgoMIV GCCGGC 1 cut(s) 1675
NheI GCTAGC 1 cut(s) 1087
NmeAIII GCCGAG 2 cut(s) 869, 902
NmuCI GTSAC 4 cut(s) 122, 1658, 1691, 2476
NruI TCGCGA 2 cut(s) 1224, 2229
NsbI TGCGCA 1 cut(s) 1280
NspV TTCGAA 1 cut(s) 977
PceI AGGCCT 1 cut(s) 947
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 549
PctI GAATGC 2 cut(s) 418, 917
PdiI GCCGGC 1 cut(s) 1677
PdmI GAANNNNTTC 2 cut(s) 186, 973
PfeI GAWTC 8 cut(s) 68, 283, 346, 1128, 1272, 2042, 2424, 2490
PfoI TCCNGGA 1 cut(s) 1571
PleI GAGTC 2 cut(s) 160, 845
PluTI GGCGCC 1 cut(s) 29
PmaCI CACGTG 2 cut(s) 122, 2344
PmlI CACGTG 2 cut(s) 122, 2344
PpsI GAGTC 2 cut(s) 160, 845
Ppu21I YACGTR 4 cut(s) 122, 1872, 1914, 2344
PpuMI RGGWCCY 2 cut(s) 1027, 1569
PshBI ATTAAT 1 cut(s) 201
Psp124BI GAGCTC 2 cut(s) 249, 1423
Psp5II RGGWCCY 2 cut(s) 1027, 1569
Psp6I CCWGG 5 cut(s) 667, 1152, 1571, 1647, 2187
PspCI CACGTG 2 cut(s) 122, 2344
PspEI GGTNACC 2 cut(s) 211, 1148
PspFI CCCAGC 3 cut(s) 511, 986, 1607
PspGI CCWGG 5 cut(s) 667, 1152, 1571, 1647, 2187
PspPPI RGGWCCY 2 cut(s) 1027, 1569
PstI CTGCAG 3 cut(s) 870, 1051, 1193
PstNI CAGNNNCTG 1 cut(s) 1572
PsuI RGATCY 1 cut(s) 709
RruI TCGCGA 2 cut(s) 1224, 2229
RsaI GTAC 2 cut(s) 6, 1715
RsaNI GTAC 2 cut(s) 5, 1714
RseI CAYNNNNRTG 2 cut(s) 411, 1556
Rsr2I CGGWCCG 1 cut(s) 9
RsrII CGGWCCG 1 cut(s) 9
SacI GAGCTC 2 cut(s) 249, 1423
Sau3AI GATC 9 cut(s) 169, 549, 709, 1546, 1628, 1753, 2086, 2230, 2310
SchI GAGTC 2 cut(s) 161, 845
SduI GDGCHC 5 cut(s) 249, 1423, 1596, 1813, 1953
SfaNI GCATC 6 cut(s) 415, 777, 1336, 2033, 2417, 2508
SfcI CTRYAG 3 cut(s) 866, 1047, 1189
SfoI GGCGCC 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 977
SinI GGWCC 7 cut(s) 9, 818, 1027, 1245, 1465, 1569, 2017
SmaI CCCGGG 1 cut(s) 426
SmiMI CAYNNNNRTG 2 cut(s) 411, 1556
SmlI CTYRAG 4 cut(s) 374, 485, 566, 1011
SmoI CTYRAG 4 cut(s) 374, 485, 566, 1011
SseBI AGGCCT 1 cut(s) 947
SspDI GGCGCC 1 cut(s) 25
SspI AATATT 2 cut(s) 448, 763
SstI GAGCTC 2 cut(s) 249, 1423
StuI AGGCCT 1 cut(s) 947
TaaI ACNGT 5 cut(s) 13, 160, 602, 1702, 1945
TaiI ACGT 7 cut(s) 124, 299, 1560, 1791, 1874, 1916, 2346
TaqII GACCGA 1 cut(s) 1385
TauI GCSGC 5 cut(s) 1920, 2258, 2288, 2454, 2527
TfiI GAWTC 8 cut(s) 68, 283, 346, 1128, 1272, 2042, 2424, 2490
TscAI CASTG 1 cut(s) 1782
TseFI GTSAC 4 cut(s) 122, 1658, 1691, 2476
TseI GCWGC 9 cut(s) 103, 1046, 1049, 1084, 1383, 1995, 2306, 2512, 2521
Tsp45I GTSAC 4 cut(s) 122, 1658, 1691, 2476
TspDTI ATGAA 7 cut(s) 33, 195, 545, 1592, 2104, 2236, 2457
TspGWI ACGGA 3 cut(s) 22, 470, 2522
TspMI CCCGGG 1 cut(s) 424
TspRI CASTG 1 cut(s) 1782
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 7 cut(s) 9, 818, 1027, 1245, 1465, 1569, 2017
VspI ATTAAT 1 cut(s) 201
XapI RAATTY 6 cut(s) 193, 973, 1780, 2103, 2133, 2444
XcmI CCANNNNNNNNNTGG 1 cut(s) 2035
XmaI CCCGGG 1 cut(s) 424
XmnI GAANNNNTTC 2 cut(s) 186, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.