FvH4_5g15942

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000194
Physical Location & Seq
Reverse (-)
9031475 .. 9036851
5377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15942.t1

Sequence Viewer

Length: 1869 bp
ATGGATGAAGTTAAATATGCAGCCTTTCAGTTGGGAGCTTTAAAAGCCTCAGGCCCCGATGGCTTTCCTGGGTTGTTCTATAGGAAGTATTGGTCGATTGTGAATGATATTGTGATAGCTTCATCTGTAGATTTCCTTAATGGTCGAGTAAGGGTACAATGCATCAATCAAACACATATTGTGCTTATTCCCAAGATCTCAAATCCTGAAAAGACCACCCATTTCCGGCCTATAAGTTTGTGCAATAACTCTTACAAAATCCTTGCCAAACTCCTAGCCAACCGACTGAAACCCCTCCTTCCGACACTCATCTCACATAATCAAAATGCCTTTGTGTCTGAAAGATTGATACAAGATAACATTCTGTTGGCACATGAAGCCTATCACTACTTGCGGTTGAAAAAAGAAGGGAAAATCAGTGGGTGGAAAGAAAAGTCCCTTTCACAAGTAGGGAAGACTGTGCTCATAAAAGCAGTGGCTTTAGCAGTTCTTGCCTTTCCGATGACATGCTTCAGGTTCCCTAAAAATTCAATGTGGGCAAGAGTTCTCAAGGCAAAGTATTTTCCTAAGGTTGGTTTTTCAAAAGCTAAAAAGGGGCATCGGGCTTCTTGGGGATGGTCTAGCCTCCTGGAAGCCAGAGATTTTATCACAAAAATGGGGTGTTGGCTTATCAACGGTTCATCTATAAATTTATGGAAGGATCAGTGGTTACCACCTCCTAATATAGGTTGTTTACAATCTATTGCTCCGATTCCTGATGATGCCCCAACACTGGTTAGTGATTTAATTGACAGAGAAAACAGGTCTTGGAATTTGGATACAATTCTACTACTCAACCCAATTGATGTCAACAGAATTCTTTCTATTCCAATTGGCCCTGGCGTAGGGAATGACAGATTAATATGGCCCTTAACTAAGAATGGCAAGTATACTGTTTCAAGTGTCCGCCTAAGTCCGACACAACCTCCGCTAATCTCACCGTCGATTCCTCCTCGCCTCGACGCCGGGTTCCTCCTCGCCTCAGCGCTCTCCTTTCCTCAGTGCTCGCCTCGACTTAGCGCTCGCCTCGCCTCAGCGCTCGCTTCCTCCTCGCCTCTGCGCTCGCTTCCTCCTCGCCTCTGCGCTCGTCAGGCAAGTTCTCCTTGCTTGATTTTTTGTGTAAATGTTGGTTCTGGTTGTGCAAATTTGAGATTAGATGTTGTAGATGAGGAAAGAAATTCATTGAAACTGAGAAGGGAATTACTTGACAACAATGGGGAGAGGAAAGAAAGTAATTGTGCGGCCCAACCGTTCTGCTTTTGGCCTTCAGCATTCGTCAACGGCGCCTTAATAACATCACCATCTCCTCCAGTTACATCAGCCCCTCTGCTCGAAGCTACAAACCCAAGTTCAAGTCAGCCTCCTTCAAGTGAACCCGGGATTGAAGTTGGTCAAGTTGCTGCATCTGTAGGTGAGGGTGGTGTGGCTTCTGCTACTGCATCTGTAGGCGAGGATGGTGATGGTCCTGCTCAATCAGGTGATGATATTGCAGAGGTTGTCGAAAATATTGATGAACCAACAATTGAAAACACAGAGTTTTATTACGATGTTGAGCGAGTTGCCTCTTTACTCAACCTTTTTCGCAAGAAACTGTCTCAATCCCCAGGAATCATATCAGCCTTTGAGTTCATCAACACCTGCTCAAAGGAAAAATTGAAAACAAAGAGCGATGGAGTTTTGAAATGGACACACCCTCCTGAGGGAGTGACTACTATTAATTGTGATACGGCCTGGTCTGATGAGAAGAATGAGGGTCTGGGAGTAGTTCTCCGCAACCATGAAGGAGAATGTATCGGAGGGCTCATAGGCAAGCCTCTTTGCCATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

623

Amino Acids

67.91

Weight (kDa)

8.73

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 70 - 131 1.6e-06 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1685
Acc36I ACCTGC 1 cut(s) 1685
AccB1I GGYRCC 1 cut(s) 1322
AccI GTMKAC 1 cut(s) 929
AciI CCGC 5 cut(s) 394, 946, 968, 1280, 1810
AclWI GGATC 1 cut(s) 708
AcsI RAATTY 6 cut(s) 526, 688, 811, 855, 1183, 1216
AcuI CTGAAG 2 cut(s) 496, 1290
AcyI GRCGYC 2 cut(s) 1002, 1323
AfaI GTAC 1 cut(s) 156
AfeI AGCGCT 3 cut(s) 1026, 1060, 1077
AfiI CCNNNNNNNGG 7 cut(s) 225, 572, 725, 772, 884, 1738, 1739
AjnI CCWGG 5 cut(s) 67, 627, 877, 1642, 1769
AluBI AGCT 4 cut(s) 38, 119, 587, 1376
AluI AGCT 4 cut(s) 38, 119, 587, 1376
Alw21I GWGCWC 2 cut(s) 465, 1046
Alw26I GTCTC 1 cut(s) 1638
AlwI GGATC 1 cut(s) 708
Ama87I CYCGRG 1 cut(s) 1415
Aor51HI AGCGCT 3 cut(s) 1026, 1060, 1077
AoxI GGCC 7 cut(s) 52, 227, 874, 905, 1281, 1301, 1767
ApeKI GCWGC 2 cut(s) 20, 1439
ApoI RAATTY 6 cut(s) 526, 688, 811, 855, 1183, 1216
AseI ATTAAT 2 cut(s) 899, 1755
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 6 cut(s) 1027, 1061, 1078, 1101, 1124, 1325
AspS9I GGNCC 5 cut(s) 53, 875, 906, 1282, 1502
AsuC2I CCSGG 3 cut(s) 1006, 1416, 1417
AsuHPI GGTGA 5 cut(s) 969, 1329, 1463, 1508, 1529
AvaI CYCGRG 1 cut(s) 1415
AvaII GGWCC 1 cut(s) 1502
AxyI CCTNAGG 3 cut(s) 49, 567, 1737
BanI GGYRCC 1 cut(s) 1322
BanII GRGCYC 1 cut(s) 1842
BbsI GAAGAC 1 cut(s) 461
Bbv12I GWGCWC 2 cut(s) 465, 1046
BbvCI CCTCAGC 2 cut(s) 1021, 1072
BbvI GCAGC 2 cut(s) 32, 1426
BccI CCATC 6 cut(s) 53, 609, 1348, 1487, 1493, 1703
BceAI ACGGC 2 cut(s) 1336, 1782
BciT130I CCWGG 5 cut(s) 69, 629, 879, 1644, 1771
BciVI GTATCC 1 cut(s) 811
BcnI CCSGG 3 cut(s) 1006, 1416, 1417
BcoDI GTCTC 1 cut(s) 1638
BfaI CTAG 2 cut(s) 275, 621
BfmI CTRYAG 5 cut(s) 79, 126, 1446, 1482, 1865
BfoI RGCGCY 4 cut(s) 1028, 1062, 1079, 1326
BfuAI ACCTGC 1 cut(s) 1685
BfuI GTATCC 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 195
BisI GCNGC 3 cut(s) 21, 1281, 1440
BlsI GCNGC 3 cut(s) 22, 1282, 1441
Bme1390I CCNGG 8 cut(s) 69, 629, 879, 1006, 1416, 1417, 1644, 1771
Bme18I GGWCC 1 cut(s) 1502
BmeT110I CYCGRG 1 cut(s) 1415
BmgT120I GGNCC 5 cut(s) 53, 875, 906, 1282, 1502
BmiI GGNNCC 4 cut(s) 55, 518, 1010, 1324
BmrFI CCNGG 8 cut(s) 69, 629, 879, 1006, 1416, 1417, 1644, 1771
BmsI GCATC 5 cut(s) 171, 607, 751, 1451, 1487
BpiI GAAGAC 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 1791, 1823
BpmI CTGGAG 1 cut(s) 1332
Bpu10I CCTNAGC 2 cut(s) 1021, 1072
BpuEI CTTGAG 1 cut(s) 533
BpuMI CCSGG 3 cut(s) 1006, 1416, 1417
BsaHI GRCGYC 2 cut(s) 1002, 1323
BsaJI CCNNGG 4 cut(s) 68, 877, 1415, 1642
BsaXI ACNNNNNCTCC 4 cut(s) 949, 979, 1717, 1747
Bsc4I CCNNNNNNNGG 7 cut(s) 225, 572, 725, 772, 884, 1738, 1739
Bse1I ACTGG 2 cut(s) 777, 1349
Bse21I CCTNAGG 3 cut(s) 49, 567, 1737
BseBI CCWGG 5 cut(s) 69, 629, 879, 1644, 1771
BseDI CCNNGG 4 cut(s) 68, 877, 1415, 1642
BseGI GGATG 3 cut(s) 10, 620, 1498
BseLI CCNNNNNNNGG 7 cut(s) 225, 572, 725, 772, 884, 1738, 1739
BseMII CTCAG 6 cut(s) 63, 1035, 1052, 1086, 1220, 1728
BseNI ACTGG 2 cut(s) 777, 1349
BseRI GAGGAG 5 cut(s) 981, 1004, 1078, 1101, 1335
BseXI GCAGC 2 cut(s) 32, 1426
BshFI GGCC 7 cut(s) 54, 229, 876, 907, 1283, 1303, 1769
BshNI GGYRCC 1 cut(s) 1322
BsiHKAI GWGCWC 2 cut(s) 465, 1046
BsiHKCI CYCGRG 1 cut(s) 1415
BsiSI CCGG 3 cut(s) 226, 1005, 1416
BslFI GGGAC 1 cut(s) 421
BslI CCNNNNNNNGG 7 cut(s) 225, 572, 725, 772, 884, 1738, 1739
BsmAI GTCTC 1 cut(s) 1638
BsmFI GGGAC 1 cut(s) 421
BsmI GAATGC 1 cut(s) 1310
BsnI GGCC 7 cut(s) 54, 229, 876, 907, 1283, 1303, 1769
BsoBI CYCGRG 1 cut(s) 1415
Bsp1286I GDGCHC 3 cut(s) 465, 1046, 1842
Bsp143I GATC 2 cut(s) 195, 700
BspACI CCGC 5 cut(s) 394, 946, 968, 1280, 1810
BspANI GGCC 7 cut(s) 54, 229, 876, 907, 1283, 1303, 1769
BspCNI CTCAG 6 cut(s) 62, 1034, 1051, 1085, 1221, 1729
BspLI GGNNCC 4 cut(s) 55, 518, 1010, 1324
BspMI ACCTGC 1 cut(s) 1685
BspPI GGATC 1 cut(s) 708
BspT107I GGYRCC 1 cut(s) 1322
BsrI ACTGG 2 cut(s) 777, 1349
BssECI CCNNGG 4 cut(s) 68, 877, 1415, 1642
BssMI GATC 2 cut(s) 195, 700
BssNAI GTATAC 1 cut(s) 930
BssNI GRCGYC 2 cut(s) 1002, 1323
Bst1107I GTATAC 1 cut(s) 930
Bst2UI CCWGG 5 cut(s) 69, 629, 879, 1644, 1771
Bst4CI ACNGT 6 cut(s) 460, 677, 934, 981, 1290, 1632
BstACI GRCGYC 2 cut(s) 1002, 1323
BstAPI GCANNNNNTGC 1 cut(s) 491
BstC8I GCNNGC 5 cut(s) 1046, 1063, 1080, 1103, 1850
BstEII GGTNACC 1 cut(s) 708
BstENI CCTNNNNNAGG 2 cut(s) 723, 882
BstF5I GGATG 3 cut(s) 10, 620, 1498
BstH2I RGCGCY 4 cut(s) 1028, 1062, 1079, 1326
BstHHI GCGC 6 cut(s) 1027, 1061, 1078, 1101, 1124, 1325
BstKTI GATC 2 cut(s) 198, 703
BstMAI GTCTC 1 cut(s) 1638
BstMBI GATC 2 cut(s) 195, 700
BstMWI GCNNNNNNNGC 6 cut(s) 44, 60, 377, 491, 1067, 1130
BstNI CCWGG 5 cut(s) 69, 629, 879, 1644, 1771
BstNSI RCATGY 1 cut(s) 510
BstPI GGTNACC 1 cut(s) 708
BstSCI CCNGG 8 cut(s) 67, 627, 877, 1004, 1414, 1415, 1642, 1769
BstSFI CTRYAG 5 cut(s) 79, 126, 1446, 1482, 1865
BstV1I GCAGC 2 cut(s) 32, 1426
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 930
Bsu36I CCTNAGG 3 cut(s) 49, 567, 1737
BsuI GTATCC 1 cut(s) 811
BsuRI GGCC 7 cut(s) 54, 229, 876, 907, 1283, 1303, 1769
BtgZI GCGATG 1 cut(s) 1722
BtsCI GGATG 3 cut(s) 10, 620, 1498
BtsI GCAGTG 1 cut(s) 480
BtsIMutI CAGTG 5 cut(s) 424, 480, 710, 770, 1046
BveI ACCTGC 1 cut(s) 1685
Cac8I GCNNGC 5 cut(s) 1046, 1063, 1080, 1103, 1850
CfoI GCGC 6 cut(s) 1027, 1061, 1078, 1101, 1124, 1325
Cfr13I GGNCC 5 cut(s) 53, 875, 906, 1282, 1502
Cfr9I CCCGGG 1 cut(s) 1415
CseI GACGC 1 cut(s) 1010
Csp6I GTAC 1 cut(s) 155
CviAII CATG 3 cut(s) 374, 507, 1817
CviQI GTAC 1 cut(s) 155
DinI GGCGCC 1 cut(s) 1324
DpnI GATC 2 cut(s) 197, 702
DpnII GATC 2 cut(s) 195, 700
DraI TTTAAA 1 cut(s) 42
EciI GGCGGA 1 cut(s) 935
Eco24I GRGCYC 1 cut(s) 1842
Eco47I GGWCC 1 cut(s) 1502
Eco47III AGCGCT 3 cut(s) 1026, 1060, 1077
Eco57I CTGAAG 2 cut(s) 496, 1290
Eco81I CCTNAGG 3 cut(s) 49, 567, 1737
Eco88I CYCGRG 1 cut(s) 1415
Eco91I GGTNACC 1 cut(s) 708
EcoNI CCTNNNNNAGG 2 cut(s) 723, 882
EcoO109I RGGNCCY 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 708
EcoRI GAATTC 1 cut(s) 855
EcoRII CCWGG 5 cut(s) 67, 627, 877, 1642, 1769
EcoT22I ATGCAT 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 1842
EgeI GGCGCC 1 cut(s) 1324
EheI GGCGCC 1 cut(s) 1324
FaeI CATG 3 cut(s) 377, 510, 1820
FalI AAGNNNNNCTT 2 cut(s) 1126, 1158
FaqI GGGAC 1 cut(s) 421
FatI CATG 3 cut(s) 373, 506, 1816
FblI GTMKAC 1 cut(s) 929
Fnu4HI GCNGC 3 cut(s) 21, 1281, 1440
FokI GGATG 3 cut(s) 17, 627, 1505
FriOI GRGCYC 1 cut(s) 1842
Fsp4HI GCNGC 3 cut(s) 21, 1281, 1440
FspBI CTAG 2 cut(s) 275, 621
GlaI GCGC 6 cut(s) 1026, 1060, 1077, 1100, 1123, 1324
GluI GCNGC 3 cut(s) 21, 1281, 1440
GsuI CTGGAG 1 cut(s) 1332
HaeII RGCGCY 4 cut(s) 1028, 1062, 1079, 1326
HaeIII GGCC 7 cut(s) 54, 229, 876, 907, 1283, 1303, 1769
HapII CCGG 3 cut(s) 226, 1005, 1416
HgaI GACGC 1 cut(s) 1010
HhaI GCGC 6 cut(s) 1027, 1061, 1078, 1101, 1124, 1325
Hin1I GRCGYC 2 cut(s) 1002, 1323
Hin1II CATG 3 cut(s) 377, 510, 1820
Hin6I GCGC 6 cut(s) 1025, 1059, 1076, 1099, 1122, 1323
HinP1I GCGC 6 cut(s) 1025, 1059, 1076, 1099, 1122, 1323
HincII GTYRAC 2 cut(s) 850, 1318
HindII GTYRAC 2 cut(s) 850, 1318
HinfI GANTC 3 cut(s) 751, 985, 1647
HpaII CCGG 3 cut(s) 226, 1005, 1416
HphI GGTGA 5 cut(s) 969, 1329, 1463, 1508, 1529
Hpy166II GTNNAC 5 cut(s) 734, 850, 930, 1318, 1412
Hpy188I TCNGA 7 cut(s) 303, 340, 501, 750, 957, 1777, 1835
Hpy188III TCNNGA 3 cut(s) 206, 755, 1736
Hpy8I GTNNAC 5 cut(s) 734, 850, 930, 1318, 1412
Hpy99I CGWCG 2 cut(s) 985, 1004
HpyAV CCTTC 7 cut(s) 308, 401, 691, 1227, 1314, 1413, 1814
HpyCH4III ACNGT 6 cut(s) 460, 677, 934, 981, 1290, 1632
HpyCH4V TGCA 7 cut(s) 20, 162, 243, 1181, 1442, 1478, 1529
HpyF10VI GCNNNNNNNGC 6 cut(s) 44, 60, 377, 491, 1067, 1130
Hsp92I GRCGYC 2 cut(s) 1002, 1323
Hsp92II CATG 3 cut(s) 377, 510, 1820
HspAI GCGC 6 cut(s) 1025, 1059, 1076, 1099, 1122, 1323
KasI GGCGCC 1 cut(s) 1322
Kzo9I GATC 2 cut(s) 195, 700
LmnI GCTCC 2 cut(s) 35, 751
Lsp1109I GCAGC 2 cut(s) 32, 1426
LweI GCATC 5 cut(s) 171, 607, 751, 1451, 1487
MaeI CTAG 2 cut(s) 275, 621
MaeIII GTNAC 3 cut(s) 708, 1351, 1744
MalI GATC 2 cut(s) 197, 702
MboI GATC 2 cut(s) 195, 700
MboII GAAGA 2 cut(s) 466, 1795
MfeI CAATTG 3 cut(s) 840, 870, 1560
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 3 cut(s) 465, 1046, 1842
Mly113I GGCGCC 1 cut(s) 1323
MmeI TCCRAC 2 cut(s) 326, 980
Mph1103I ATGCAT 1 cut(s) 164
MroXI GAANNNNTTC 1 cut(s) 859
MseI TTAA 8 cut(s) 12, 41, 138, 785, 899, 911, 1328, 1755
MslI CAYNNNNRTG 1 cut(s) 653
MspI CCGG 3 cut(s) 226, 1005, 1416
MspR9I CCNGG 8 cut(s) 69, 629, 879, 1006, 1416, 1417, 1644, 1771
MunI CAATTG 3 cut(s) 840, 870, 1560
Mva1269I GAATGC 1 cut(s) 1310
MvaI CCWGG 5 cut(s) 69, 629, 879, 1644, 1771
MwoI GCNNNNNNNGC 6 cut(s) 44, 60, 377, 491, 1067, 1130
NarI GGCGCC 1 cut(s) 1323
NciI CCSGG 3 cut(s) 1006, 1416, 1417
NdeII GATC 2 cut(s) 195, 700
NlaIII CATG 3 cut(s) 377, 510, 1820
NlaIV GGNNCC 4 cut(s) 55, 518, 1010, 1324
NmuCI GTSAC 1 cut(s) 1744
NsiI ATGCAT 1 cut(s) 164
NspI RCATGY 1 cut(s) 510
PaqCI CACCTGC 1 cut(s) 1685
PctI GAATGC 1 cut(s) 1310
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 3 cut(s) 751, 985, 1647
PfoI TCCNGGA 1 cut(s) 627
PkrI GCNGC 3 cut(s) 22, 1282, 1441
PluTI GGCGCC 1 cut(s) 1326
PshBI ATTAAT 2 cut(s) 899, 1755
Psp6I CCWGG 5 cut(s) 67, 627, 877, 1642, 1769
PspEI GGTNACC 1 cut(s) 708
PspGI CCWGG 5 cut(s) 67, 627, 877, 1642, 1769
PspN4I GGNNCC 4 cut(s) 55, 518, 1010, 1324
PspPI GGNCC 5 cut(s) 53, 875, 906, 1282, 1502
PsuI RGATCY 1 cut(s) 195
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 8 cut(s) 12, 41, 138, 785, 899, 911, 1328, 1755
SatI GCNGC 3 cut(s) 21, 1281, 1440
Sau3AI GATC 2 cut(s) 195, 700
Sau96I GGNCC 5 cut(s) 53, 875, 906, 1282, 1502
ScrFI CCNGG 8 cut(s) 69, 629, 879, 1006, 1416, 1417, 1644, 1771
SduI GDGCHC 3 cut(s) 465, 1046, 1842
SfaNI GCATC 5 cut(s) 171, 607, 751, 1451, 1487
SfcI CTRYAG 5 cut(s) 79, 126, 1446, 1482, 1865
SfoI GGCGCC 1 cut(s) 1324
SinI GGWCC 1 cut(s) 1502
SmaI CCCGGG 1 cut(s) 1417
SmiMI CAYNNNNRTG 1 cut(s) 653
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
SsiI CCGC 5 cut(s) 394, 946, 968, 1280, 1810
SspDI GGCGCC 1 cut(s) 1322
SspI AATATT 1 cut(s) 1546
SspMI CTAG 2 cut(s) 275, 621
StyD4I CCNGG 8 cut(s) 67, 627, 877, 1004, 1414, 1415, 1642, 1769
TaaI ACNGT 6 cut(s) 460, 677, 934, 981, 1290, 1632
TaqI TCGA 7 cut(s) 95, 145, 983, 999, 1051, 1371, 1539
TauI GCSGC 1 cut(s) 1283
TfiI GAWTC 3 cut(s) 751, 985, 1647
Tru1I TTAA 8 cut(s) 12, 41, 138, 785, 899, 911, 1328, 1755
Tru9I TTAA 8 cut(s) 12, 41, 138, 785, 899, 911, 1328, 1755
TscAI CASTG 5 cut(s) 424, 480, 710, 777, 1046
TseFI GTSAC 1 cut(s) 1744
TseI GCWGC 2 cut(s) 20, 1439
Tsp45I GTSAC 1 cut(s) 1744
TspDTI ATGAA 8 cut(s) 21, 111, 390, 669, 1209, 1566, 1657, 1833
TspMI CCCGGG 1 cut(s) 1415
TspRI CASTG 5 cut(s) 424, 480, 710, 777, 1046
VpaK11BI GGWCC 1 cut(s) 1502
VspI ATTAAT 2 cut(s) 899, 1755
XagI CCTNNNNNAGG 2 cut(s) 723, 882
XapI RAATTY 6 cut(s) 526, 688, 811, 855, 1183, 1216
XceI RCATGY 1 cut(s) 510
XmaI CCCGGG 1 cut(s) 1415
XmiI GTMKAC 1 cut(s) 929
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 2 cut(s) 275, 621
Zsp2I ATGCAT 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.