MD06G1107000.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000194
Physical Location & Seq
Forward (+)
24647369 .. 24648484
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1107000.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGTAAGTGATCTGATTGACTCAGATACTAAGGTATGGAGAACGGACTTGATTGCAAACGGGTTTCACCGGGGCGATGTTTCAACGATCTTAAGCATTCCCTTAAGTCATGCTGGCAGTAATGACAGGCTAGTGTGGCACTATGCTACTAATGGGATCTATTCCGTTAAATCGGGTTATAGTATGGCTTTAAAGTTAATGGATGATGGTGCTCTGGGAAGAAAAGGGCGTGGCAACCCCAGTGAGAGTAACAAACTAAAGATGGTATGGAATAATATCTGGAGACTGCAGGTTCCTCACAAAATCAGAATCTTCATCTGGCGTTGCTGTAATAATGCTCTGGCGGTCAGACGGAACCTTAAAAGACGTCATATGCGTGTTGACAACGTATGTGGCGTTTGTAATGCCGTCAACGAAACTGAAAACCACCTGTTCTTCCGATGTGAGATAAGTCATGTCTTCTGGTTTTGCTCTCCTCTTCATCTTAATTCTCATGTCCTGGAGGGTAGAGACTTTCTTGAAAGCTGGTGTAACTTCTGTGACCAAGTAAAGGACAGGATCGATGCGGATGATATTCGTCATGATTTTGCCTTCGGCCTATGGAGATTGTGGAAAAACAGGAACGATGTGGTTTTTAAAGGGATCTATCGTCAGCCTCTGGATATCTTGGAGGCCTGGAAAAAGAGCACCGGTGAGTACAAGGCCAGTCTGGCTCCGGATCAAGAAGATCACAGCTTGAGGATGCCGAAGACTATCATGGTCAGTGATCGTATATGTACCAAGTGGAAGAGACCAAGGTTTGGAACTATTAAGATAAATACTGATGCGGCTTGGTGTAAAGATACTCTGCGTATGGGGGTGGGCTGGTTGGGGCGGGATTTCGCTGGTTTGCTCCAGGCTGCTGGCGGGTCTGGGACTGGATTCAGCCACAGTGCAGCTGCTGCTGAAGCTTCTGCCATCAGGTTTGCCTTATTGTCTTGCATAGACCATGGGTTTGATGACATTATCATTGAATCTGACGCAAGTACGATTATTATGATGTTGAAGAAAGAAATCTTGGTTGATTTTAGTATCGAATGCATTCTTGATGACATTGAGATTCTAGCGCAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

42.27

Weight (kDa)

8.22

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 86 - 155 3.5e-16 zinc-binding in reverse transcriptase
RVT_3 PF13456 273 - 366 3.3e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 370
Acc36I ACCTGC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 800
AccIII TCCGGA 1 cut(s) 715
AciI CCGC 5 cut(s) 344, 566, 827, 874, 906
AclWI GGATC 4 cut(s) 164, 566, 650, 726
AcuI CTGAAG 1 cut(s) 966
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 3 cut(s) 698, 778, 1027
AfiI CCNNNNNNNGG 2 cut(s) 550, 800
AflII CTTAAG 2 cut(s) 91, 103
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 4 cut(s) 84, 521, 1013, 1045
AjnI CCWGG 3 cut(s) 498, 674, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 1040, 1072
AluBI AGCT 4 cut(s) 525, 735, 938, 950
AluI AGCT 4 cut(s) 525, 735, 938, 950
Alw21I GWGCWC 2 cut(s) 214, 689
Alw26I GTCTC 3 cut(s) 277, 504, 784
AlwI GGATC 4 cut(s) 164, 566, 650, 726
AlwNI CAGNNNCTG 2 cut(s) 658, 941
Aor13HI TCCGGA 1 cut(s) 715
AoxI GGCC 3 cut(s) 595, 672, 702
ApeKI GCWGC 4 cut(s) 899, 935, 938, 941
ArsI GACNNNNNNTTYG 2 cut(s) 977, 1009
AsiGI ACCGGT 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 1108
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 2 cut(s) 59, 704
BaeI ACNNNNGTAYC 2 cut(s) 18, 51
BbsI GAAGAC 2 cut(s) 451, 755
Bbv12I GWGCWC 2 cut(s) 214, 689
BbvI GCAGC 4 cut(s) 886, 925, 928, 947
BccI CCATC 3 cut(s) 200, 256, 965
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 3 cut(s) 500, 676, 896
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 3 cut(s) 277, 504, 784
BfaI CTAG 2 cut(s) 131, 1103
BfmI CTRYAG 1 cut(s) 287
BfrI CTTAAG 2 cut(s) 91, 103
BfuAI ACCTGC 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 710
BisI GCNGC 5 cut(s) 828, 900, 936, 939, 942
BlsI GCNGC 5 cut(s) 829, 901, 937, 940, 943
Bme1390I CCNGG 4 cut(s) 71, 500, 676, 896
BmiI GGNNCC 3 cut(s) 294, 356, 714
BmrFI CCNGG 4 cut(s) 71, 500, 676, 896
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 3 cut(s) 553, 732, 814
BmuI ACTGGG 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 451, 755
BpmI CTGGAG 3 cut(s) 301, 521, 878
BpuEI CTTGAG 1 cut(s) 757
BpuMI CCSGG 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 3 cut(s) 70, 794, 988
BsaWI WCCGGW 2 cut(s) 689, 715
Bsc4I CCNNNNNNNGG 2 cut(s) 550, 800
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 3 cut(s) 240, 705, 922
BseAI TCCGGA 1 cut(s) 715
BseBI CCWGG 3 cut(s) 500, 676, 896
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 70, 794, 988
BseGI GGATG 3 cut(s) 208, 574, 747
BseLI CCNNNNNNNGG 2 cut(s) 550, 800
BseMII CTCAG 1 cut(s) 36
BseNI ACTGG 3 cut(s) 240, 705, 922
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 4 cut(s) 886, 925, 928, 947
BsgI GTGCAG 1 cut(s) 954
BshFI GGCC 3 cut(s) 597, 674, 704
BshTI ACCGGT 1 cut(s) 689
BshVI ATCGAT 1 cut(s) 561
BsiHKAI GWGCWC 2 cut(s) 214, 689
BsiSI CCGG 3 cut(s) 70, 690, 716
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 2 cut(s) 550, 800
BsmAI GTCTC 3 cut(s) 277, 504, 784
BsmFI GGGAC 1 cut(s) 928
BsmI GAATGC 3 cut(s) 96, 1080, 1082
BsnI GGCC 3 cut(s) 597, 674, 704
Bso31I GGTCTC 1 cut(s) 784
Bsp1286I GDGCHC 2 cut(s) 214, 689
Bsp13I TCCGGA 1 cut(s) 715
Bsp143I GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
Bsp19I CCATGG 1 cut(s) 988
BspACI CCGC 5 cut(s) 344, 566, 827, 874, 906
BspANI GGCC 3 cut(s) 597, 674, 704
BspCNI CTCAG 1 cut(s) 35
BspDI ATCGAT 1 cut(s) 561
BspEI TCCGGA 1 cut(s) 715
BspHI TCATGA 1 cut(s) 580
BspLI GGNNCC 3 cut(s) 294, 356, 714
BspMAI CTGCAG 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 280
BspPI GGATC 4 cut(s) 164, 566, 650, 726
BspTI CTTAAG 2 cut(s) 91, 103
BspTNI GGTCTC 1 cut(s) 784
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 3 cut(s) 240, 705, 922
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 70, 794, 988
BssMI GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 2 cut(s) 794, 988
Bst2UI CCWGG 3 cut(s) 500, 676, 896
Bst4CI ACNGT 1 cut(s) 932
Bst6I CTCTTC 2 cut(s) 483, 782
BstACI GRCGYC 1 cut(s) 367
BstAFI CTTAAG 2 cut(s) 91, 103
BstAPI GCANNNNNTGC 1 cut(s) 941
BstC8I GCNNGC 2 cut(s) 115, 904
BstDEI CTNAG 2 cut(s) 22, 30
BstDSI CCRYGG 1 cut(s) 988
BstF5I GGATG 3 cut(s) 208, 574, 747
BstHHI GCGC 1 cut(s) 1108
BstKTI GATC 8 cut(s) 13, 90, 159, 561, 645, 721, 730, 769
BstMAI GTCTC 3 cut(s) 277, 504, 784
BstMBI GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
BstMWI GCNNNNNNNGC 4 cut(s) 136, 710, 941, 947
BstNI CCWGG 3 cut(s) 500, 676, 896
BstSCI CCNGG 4 cut(s) 69, 498, 674, 894
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 4 cut(s) 886, 925, 928, 947
BstV2I GAAGAC 2 cut(s) 451, 755
BstX2I RGATCY 2 cut(s) 156, 642
BstXI CCANNNNNNTGG 1 cut(s) 902
BstYI RGATCY 2 cut(s) 156, 642
Bsu15I ATCGAT 1 cut(s) 561
BsuRI GGCC 3 cut(s) 597, 674, 704
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 988
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 3 cut(s) 208, 574, 747
BtsIMutI CAGTG 3 cut(s) 247, 769, 937
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 115, 904
CaiI CAGNNNCTG 2 cut(s) 658, 941
CciI TCATGA 1 cut(s) 580
CfoI GCGC 1 cut(s) 1108
Cfr10I RCCGGY 1 cut(s) 689
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 3 cut(s) 697, 777, 1026
CspAI ACCGGT 1 cut(s) 689
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 6 cut(s) 110, 455, 494, 581, 757, 989
CviQI GTAC 3 cut(s) 697, 777, 1026
DdeI CTNAG 2 cut(s) 22, 30
DpnI GATC 8 cut(s) 12, 89, 158, 560, 644, 720, 729, 768
DpnII GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
DraI TTTAAA 2 cut(s) 192, 637
Eam1104I CTCTTC 2 cut(s) 483, 782
EarI CTCTTC 2 cut(s) 483, 782
Eco130I CCWWGG 2 cut(s) 794, 988
Eco147I AGGCCT 1 cut(s) 674
Eco31I GGTCTC 1 cut(s) 784
Eco32I GATATC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 966
EcoRII CCWGG 3 cut(s) 498, 674, 894
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 794, 988
EcoT22I ATGCAT 1 cut(s) 1082
ErhI CCWWGG 2 cut(s) 794, 988
FaeI CATG 6 cut(s) 113, 458, 497, 584, 760, 992
FaqI GGGAC 1 cut(s) 928
FatI CATG 6 cut(s) 109, 454, 493, 580, 756, 988
FauI CCCGC 2 cut(s) 867, 899
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 828, 900, 936, 939, 942
FokI GGATG 3 cut(s) 215, 581, 754
Fsp4HI GCNGC 5 cut(s) 828, 900, 936, 939, 942
FspBI CTAG 2 cut(s) 131, 1103
GlaI GCGC 1 cut(s) 1107
GluI GCNGC 5 cut(s) 828, 900, 936, 939, 942
GsuI CTGGAG 3 cut(s) 301, 521, 878
HaeIII GGCC 3 cut(s) 597, 674, 704
HapII CCGG 3 cut(s) 70, 690, 716
HgaI GACGC 1 cut(s) 1028
HhaI GCGC 1 cut(s) 1108
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 6 cut(s) 113, 458, 497, 584, 760, 992
Hin6I GCGC 1 cut(s) 1106
HinP1I GCGC 1 cut(s) 1106
HincII GTYRAC 2 cut(s) 382, 412
HindII GTYRAC 2 cut(s) 382, 412
HindIII AAGCTT 1 cut(s) 948
HinfI GANTC 5 cut(s) 20, 309, 921, 1013, 1099
HpaII CCGG 3 cut(s) 70, 690, 716
HphI GGTGA 2 cut(s) 59, 704
Hpy166II GTNNAC 2 cut(s) 382, 412
Hpy188I TCNGA 6 cut(s) 15, 25, 308, 350, 440, 1018
Hpy188III TCNNGA 7 cut(s) 280, 518, 581, 659, 716, 722, 1085
Hpy8I GTNNAC 2 cut(s) 382, 412
HpyAV CCTTC 1 cut(s) 601
HpyCH4III ACNGT 1 cut(s) 932
HpyCH4IV ACGT 2 cut(s) 367, 387
HpyCH4V TGCA 5 cut(s) 56, 289, 935, 981, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 136, 710, 941, 947
HpyF3I CTNAG 2 cut(s) 22, 30
HpySE526I ACGT 2 cut(s) 367, 387
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 6 cut(s) 113, 458, 497, 584, 760, 992
HspAI GCGC 1 cut(s) 1106
Kpn2I TCCGGA 1 cut(s) 715
Kzo9I GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
LmnI GCTCC 2 cut(s) 718, 897
Lsp1109I GCAGC 4 cut(s) 886, 925, 928, 947
LweI GCATC 3 cut(s) 553, 732, 814
MaeI CTAG 2 cut(s) 131, 1103
MaeII ACGT 2 cut(s) 367, 387
MaeIII GTNAC 3 cut(s) 248, 530, 539
MalI GATC 8 cut(s) 12, 89, 158, 560, 644, 720, 729, 768
MboI GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
MboII GAAGA 9 cut(s) 231, 304, 427, 451, 470, 737, 760, 799, 1057
MflI RGATCY 2 cut(s) 156, 642
MhlI GDGCHC 2 cut(s) 214, 689
MluCI AATT 1 cut(s) 487
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 306, 486, 496, 664, 666, 732
Mph1103I ATGCAT 1 cut(s) 1082
MroI TCCGGA 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 1080
MseI TTAA 9 cut(s) 92, 104, 168, 191, 197, 360, 486, 636, 810
MslI CAYNNNNRTG 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 938
MspCI CTTAAG 2 cut(s) 91, 103
MspI CCGG 3 cut(s) 70, 690, 716
MspR9I CCNGG 4 cut(s) 71, 500, 676, 896
Mva1269I GAATGC 3 cut(s) 96, 1080, 1082
MvaI CCWGG 3 cut(s) 500, 676, 896
MwoI GCNNNNNNNGC 4 cut(s) 136, 710, 941, 947
NciI CCSGG 1 cut(s) 71
NcoI CCATGG 1 cut(s) 988
NdeI CATATG 1 cut(s) 372
NdeII GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
NlaIII CATG 6 cut(s) 113, 458, 497, 584, 760, 992
NlaIV GGNNCC 3 cut(s) 294, 356, 714
NmuCI GTSAC 1 cut(s) 539
NsiI ATGCAT 1 cut(s) 1082
PagI TCATGA 1 cut(s) 580
PceI AGGCCT 1 cut(s) 674
PcsI WCGNNNNNNNCGW 2 cut(s) 373, 393
PctI GAATGC 3 cut(s) 96, 1080, 1082
PdmI GAANNNNTTC 1 cut(s) 1080
PfeI GAWTC 4 cut(s) 309, 921, 1013, 1099
PflMI CCANNNNNTGG 1 cut(s) 800
PfoI TCCNGGA 1 cut(s) 498
PinAI ACCGGT 1 cut(s) 689
PkrI GCNGC 5 cut(s) 829, 901, 937, 940, 943
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 3 cut(s) 498, 674, 894
PspGI CCWGG 3 cut(s) 498, 674, 894
PspN4I GGNNCC 3 cut(s) 294, 356, 714
PstI CTGCAG 1 cut(s) 291
PstNI CAGNNNCTG 2 cut(s) 658, 941
PsuI RGATCY 2 cut(s) 156, 642
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 3 cut(s) 698, 778, 1027
RsaNI GTAC 3 cut(s) 697, 777, 1026
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 9 cut(s) 92, 104, 168, 191, 197, 360, 486, 636, 810
SatI GCNGC 5 cut(s) 828, 900, 936, 939, 942
Sau3AI GATC 8 cut(s) 10, 87, 156, 558, 642, 718, 727, 766
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 4 cut(s) 71, 500, 676, 896
SduI GDGCHC 2 cut(s) 214, 689
SfaNI GCATC 3 cut(s) 553, 732, 814
SfcI CTRYAG 1 cut(s) 287
SgrAI CRCCGGYG 1 cut(s) 689
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 3 cut(s) 91, 103, 736
SmoI CTYRAG 3 cut(s) 91, 103, 736
Sse9I AATT 1 cut(s) 487
SseBI AGGCCT 1 cut(s) 674
SsiI CCGC 5 cut(s) 344, 566, 827, 874, 906
SspMI CTAG 2 cut(s) 131, 1103
StuI AGGCCT 1 cut(s) 674
StyD4I CCNGG 4 cut(s) 69, 498, 674, 894
StyI CCWWGG 2 cut(s) 794, 988
TaaI ACNGT 1 cut(s) 932
TaiI ACGT 2 cut(s) 370, 390
TaqI TCGA 2 cut(s) 561, 1074
TasI AATT 1 cut(s) 487
TatI WGTACW 1 cut(s) 696
TauI GCSGC 1 cut(s) 830
TfiI GAWTC 4 cut(s) 309, 921, 1013, 1099
Tru1I TTAA 9 cut(s) 92, 104, 168, 191, 197, 360, 486, 636, 810
Tru9I TTAA 9 cut(s) 92, 104, 168, 191, 197, 360, 486, 636, 810
TscAI CASTG 3 cut(s) 247, 769, 937
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 4 cut(s) 899, 935, 938, 941
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 304, 470
TspGWI ACGGA 3 cut(s) 59, 154, 367
TspRI CASTG 3 cut(s) 247, 769, 937
Van91I CCANNNNNTGG 1 cut(s) 800
Vha464I CTTAAG 2 cut(s) 91, 103
XmnI GAANNNNTTC 1 cut(s) 1080
XspI CTAG 2 cut(s) 131, 1103
ZraI GACGTC 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 1082
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.