Rmu_co8314215.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314215.1
OG0000194
Physical Location & Seq
Reverse (-)
2 .. 817
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314215.1_g000001.1.cds

Sequence Viewer

Length: 681 bp
atgatcaaaaagatatgtcacgctggtcttttagatgccatcaagctaaacactgatggacctttggttaaccacctcttctttgctgatgaatcaatcttctttctcaaggccactttgtcaatttgcgaggtgttgtctgacacaattcatcactactgctgtgcttcggtttggggtagatcaaagacctcagctttggcttatgttaaagaaaacatacttcagaagatttcgggttggtctaagtcaactctatctcaagcaggcaaggagatattgatcaaatcagttgcaatggcagtcctgatgtacccaatgactgttttcaaattcccagctgggctctcaaatcaaataaactcggtgttggctaatttatggtgggggaatgcttcatcaccgggtatgcattggaaaaaatgggcttctcttggtattccaaaatcaaatggaggtttggggttccggaatttggcggacttcaacattgctttgcttgcaaagcagggctggcgcatcctttccagtccaaatgcattgtgggtaagagtcctaaaaagcagatatttccctcgctccactttcctagaggctacccgtggttcttcctcttcatgggcttggtctagtctccttgaaggtaggcatctcatctcgggtggaggaatgtggcaggtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

227

Amino Acids

25.09

Weight (kDa)

9.86

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 667
AccIII TCCGGA 1 cut(s) 468
AciI CCGC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 332, 472
AcuI CTGAAG 1 cut(s) 209
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 2 cut(s) 475, 618
AgsI TTSAA 3 cut(s) 331, 487, 641
AluBI AGCT 3 cut(s) 46, 197, 341
AluI AGCT 3 cut(s) 46, 197, 341
Alw26I GTCTC 1 cut(s) 638
Ama87I CYCGRG 1 cut(s) 658
Aor13HI TCCGGA 1 cut(s) 468
AoxI GGCC 1 cut(s) 111
ApoI RAATTY 2 cut(s) 332, 472
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspLEI GCGC 1 cut(s) 519
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 658
AvaII GGWCC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 348
BbvCI CCTCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 47, 50
BclI TGATCA 2 cut(s) 3, 282
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 2 cut(s) 590, 630
BfuAI ACCTGC 1 cut(s) 667
Bme1390I CCNGG 1 cut(s) 405
Bme18I GGWCC 1 cut(s) 59
BmeT110I CYCGRG 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 467
BmrFI CCNGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 25, 528, 658
Bpu10I CCTNAGC 1 cut(s) 193
BpuEI CTTGAG 2 cut(s) 92, 246
BpuMI CCSGG 1 cut(s) 405
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 601
BsaWI WCCGGW 1 cut(s) 468
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 618
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 2 cut(s) 303, 489
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 601
BseGI GGATG 1 cut(s) 519
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 2 cut(s) 475, 618
BseMI GCAATG 2 cut(s) 303, 489
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 528
BseYI CCCAGC 2 cut(s) 337, 341
BshFI GGCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 658
BsiSI CCGG 2 cut(s) 404, 469
BslI CCNNNNNNNGG 2 cut(s) 475, 618
BsmAI GTCTC 1 cut(s) 638
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 348
Bsp13I TCCGGA 1 cut(s) 468
Bsp143I GATC 3 cut(s) 3, 182, 282
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 206
BspEI TCCGGA 1 cut(s) 468
BspLI GGNNCC 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 667
BsrDI GCAATG 2 cut(s) 303, 489
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 1 cut(s) 601
BssMI GATC 3 cut(s) 3, 182, 282
Bst4CI ACNGT 1 cut(s) 325
Bst6I CTCTTC 2 cut(s) 83, 619
BstC8I GCNNGC 3 cut(s) 268, 501, 515
BstDEI CTNAG 2 cut(s) 193, 246
BstDSI CCRYGG 1 cut(s) 601
BstF5I GGATG 1 cut(s) 519
BstHHI GCGC 1 cut(s) 519
BstKTI GATC 3 cut(s) 6, 185, 285
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 3 cut(s) 3, 182, 282
BstMWI GCNNNNNNNGC 3 cut(s) 500, 505, 514
BstSCI CCNGG 1 cut(s) 403
BsuRI GGCC 1 cut(s) 113
BtgI CCRYGG 1 cut(s) 601
BtsCI GGATG 1 cut(s) 519
BtsIMutI CAGTG 1 cut(s) 51
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 3 cut(s) 268, 501, 515
CfoI GCGC 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 313
CviAII CATG 1 cut(s) 618
CviQI GTAC 1 cut(s) 313
DdeI CTNAG 2 cut(s) 193, 246
DpnI GATC 3 cut(s) 5, 184, 284
DpnII GATC 3 cut(s) 3, 182, 282
Eam1104I CTCTTC 2 cut(s) 83, 619
EarI CTCTTC 2 cut(s) 83, 619
EciI GGCGGA 1 cut(s) 494
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 59
Eco57I CTGAAG 1 cut(s) 209
Eco88I CYCGRG 1 cut(s) 658
EcoT22I ATGCAT 2 cut(s) 414, 541
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 1 cut(s) 621
FaiI YATR 6 cut(s) 16, 207, 221, 382, 410, 619
FatI CATG 1 cut(s) 617
FbaI TGATCA 2 cut(s) 3, 282
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 2 cut(s) 590, 630
GlaI GCGC 1 cut(s) 518
GsaI CCCAGC 2 cut(s) 341, 345
HaeIII GGCC 1 cut(s) 113
HapII CCGG 2 cut(s) 404, 469
HhaI GCGC 1 cut(s) 519
Hin1II CATG 1 cut(s) 621
Hin6I GCGC 1 cut(s) 517
HinP1I GCGC 1 cut(s) 517
HincII GTYRAC 2 cut(s) 70, 252
HindII GTYRAC 2 cut(s) 70, 252
HinfI GANTC 2 cut(s) 92, 552
HpaI GTTAAC 1 cut(s) 70
HpaII CCGG 2 cut(s) 404, 469
HphI GGTGA 1 cut(s) 393
Hpy166II GTNNAC 2 cut(s) 70, 252
Hpy188I TCNGA 2 cut(s) 142, 228
Hpy188III TCNNGA 2 cut(s) 307, 469
Hpy8I GTNNAC 2 cut(s) 70, 252
HpyAV CCTTC 1 cut(s) 635
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4V TGCA 4 cut(s) 296, 412, 503, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 500, 505, 514
HpyF3I CTNAG 2 cut(s) 193, 246
Hsp92II CATG 1 cut(s) 621
HspAI GCGC 1 cut(s) 517
Kpn2I TCCGGA 1 cut(s) 468
Ksp22I TGATCA 2 cut(s) 3, 282
KspAI GTTAAC 1 cut(s) 70
Kzo9I GATC 3 cut(s) 3, 182, 282
LmnI GCTCC 1 cut(s) 584
LweI GCATC 3 cut(s) 25, 528, 658
MaeI CTAG 2 cut(s) 590, 630
MaeIII GTNAC 1 cut(s) 17
MalI GATC 3 cut(s) 5, 184, 284
MboI GATC 3 cut(s) 3, 182, 282
MboII GAAGA 5 cut(s) 70, 91, 241, 600, 606
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 5 cut(s) 123, 147, 332, 376, 472
MlyI GAGTC 1 cut(s) 561
MnlI CCTC 8 cut(s) 86, 124, 202, 449, 585, 586, 622, 659
Mph1103I ATGCAT 2 cut(s) 414, 541
MroI TCCGGA 1 cut(s) 468
MseI TTAA 2 cut(s) 69, 210
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 404, 469
MspR9I CCNGG 1 cut(s) 405
Mva1269I GAATGC 1 cut(s) 397
MwoI GCNNNNNNNGC 3 cut(s) 500, 505, 514
NciI CCSGG 1 cut(s) 405
NdeII GATC 3 cut(s) 3, 182, 282
NlaIII CATG 1 cut(s) 621
NlaIV GGNNCC 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 2 cut(s) 414, 541
PctI GAATGC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 92
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
PspFI CCCAGC 2 cut(s) 337, 341
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 69, 210
Sau3AI GATC 3 cut(s) 3, 182, 282
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 405
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 3 cut(s) 25, 528, 658
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 107, 261
SmoI CTYRAG 2 cut(s) 107, 261
Sse9I AATT 5 cut(s) 123, 147, 332, 376, 472
SsiI CCGC 1 cut(s) 479
SspMI CTAG 2 cut(s) 590, 630
StyD4I CCNGG 1 cut(s) 403
TaaI ACNGT 1 cut(s) 325
TasI AATT 5 cut(s) 123, 147, 332, 376, 472
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 2 cut(s) 69, 210
Tru9I TTAA 2 cut(s) 69, 210
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 105, 140, 387, 606
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 2 cut(s) 332, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XspI CTAG 2 cut(s) 590, 630
Zsp2I ATGCAT 2 cut(s) 414, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.