Rmu_sc0001260.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001260.1
OG0000194
Physical Location & Seq
Forward (+)
2222 .. 2695
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001260.1_g000002.1.cds

Sequence Viewer

Length: 474 bp
atgaggaggcttatgtgtgcattactagattttgtaatggtggacaattcgggtatctaccttgggcttcctgcaatttggggtaggtcaaagaaggaagctttatcttacatcagggagagggttagtacgaaaattgaggggtggaaacctagttcactctctactaccggcaaagaagtcccaatcatattagtagctatggatgtacccgcctaccttatggcctgcttcaaattcccaaagaaaatctatgatgatgtcaattcggttctcagtaacttttggtggggttctaacgagtcaagcgacaagatccacaagaagcgctgggatcacttaggaaaacttaaaaatgagggaggactgggctttcgtgacctctatcactttaaccttgcctttttggcaaaacagtgttggcgcctcatccaacaacctgacactatttgggccaaagttcccaggatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

157

Amino Acids

18.17

Weight (kDa)

9.59

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 423
AciI CCGC 1 cut(s) 213
AclWI GGATC 2 cut(s) 310, 342
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 424
AfaI GTAC 2 cut(s) 130, 210
AfeI AGCGCT 1 cut(s) 329
AgsI TTSAA 1 cut(s) 235
AjnI CCWGG 1 cut(s) 464
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
AluBI AGCT 2 cut(s) 101, 200
AluI AGCT 2 cut(s) 101, 200
AlwI GGATC 2 cut(s) 310, 342
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 2 cut(s) 225, 453
ApoI RAATTY 1 cut(s) 236
ArsI GACNNNNNNTTYG 2 cut(s) 357, 389
AspLEI GCGC 2 cut(s) 330, 426
AspS9I GGNCC 1 cut(s) 453
BanI GGYRCC 1 cut(s) 423
BciT130I CCWGG 1 cut(s) 466
BfaI CTAG 2 cut(s) 26, 153
BfoI RGCGCY 2 cut(s) 331, 427
BglI GCCNNNNNGGC 1 cut(s) 407
Bme1390I CCNGG 1 cut(s) 466
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 466
BmrI ACTGGG 1 cut(s) 377
BmuI ACTGGG 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 61, 464
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 61, 464
BseGI GGATG 3 cut(s) 211, 429, 474
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 372
BseRI GAGGAG 1 cut(s) 19
BseYI CCCAGC 1 cut(s) 330
BshFI GGCC 2 cut(s) 227, 455
BshNI GGYRCC 1 cut(s) 423
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 2 cut(s) 227, 455
Bsp143I GATC 2 cut(s) 315, 334
BspACI CCGC 1 cut(s) 213
BspANI GGCC 2 cut(s) 227, 455
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 425
BspPI GGATC 2 cut(s) 310, 342
BspT107I GGYRCC 1 cut(s) 423
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 61, 464
BssMI GATC 2 cut(s) 315, 334
BssNI GRCGYC 1 cut(s) 424
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 275, 340
BstF5I GGATG 3 cut(s) 211, 429, 474
BstH2I RGCGCY 2 cut(s) 331, 427
BstHHI GCGC 2 cut(s) 330, 426
BstKTI GATC 2 cut(s) 318, 337
BstMBI GATC 2 cut(s) 315, 334
BstMWI GCNNNNNNNGC 1 cut(s) 407
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 315
BstYI RGATCY 1 cut(s) 315
BsuRI GGCC 2 cut(s) 227, 455
BtsCI GGATG 3 cut(s) 211, 429, 474
BtsIMutI CAGTG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 2 cut(s) 330, 426
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 129, 209
CviJI RGCY 7 cut(s) 10, 67, 101, 200, 227, 372, 455
CviKI_1 RGCY 7 cut(s) 10, 67, 101, 200, 227, 372, 455
CviQI GTAC 2 cut(s) 129, 209
DdeI CTNAG 2 cut(s) 275, 340
DinI GGCGCC 1 cut(s) 425
DpnI GATC 2 cut(s) 317, 336
DpnII GATC 2 cut(s) 315, 334
Eco130I CCWWGG 1 cut(s) 61
Eco47III AGCGCT 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 61
EgeI GGCGCC 1 cut(s) 425
EheI GGCGCC 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 61
FaiI YATR 5 cut(s) 14, 191, 203, 224, 255
FaqI GGGAC 1 cut(s) 167
FauI CCCGC 1 cut(s) 220
FokI GGATG 2 cut(s) 218, 416
FspBI CTAG 2 cut(s) 26, 153
GlaI GCGC 2 cut(s) 329, 425
GsaI CCCAGC 1 cut(s) 334
HaeII RGCGCY 2 cut(s) 331, 427
HaeIII GGCC 2 cut(s) 227, 455
HapII CCGG 1 cut(s) 171
HhaI GCGC 2 cut(s) 330, 426
Hin1I GRCGYC 1 cut(s) 424
Hin6I GCGC 2 cut(s) 328, 424
HinP1I GCGC 2 cut(s) 328, 424
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 1 cut(s) 302
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 43, 158
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 43, 158
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 417
HpyCH4V TGCA 2 cut(s) 20, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 407
HpyF3I CTNAG 2 cut(s) 275, 340
Hsp92I GRCGYC 1 cut(s) 424
HspAI GCGC 2 cut(s) 328, 424
KasI GGCGCC 1 cut(s) 423
Kzo9I GATC 2 cut(s) 315, 334
LpnPI CCDG 8 cut(s) 84, 100, 184, 241, 316, 353, 451, 453
MaeI CTAG 2 cut(s) 26, 153
MaeIII GTNAC 2 cut(s) 278, 377
MalI GATC 2 cut(s) 317, 336
MboI GATC 2 cut(s) 315, 334
MflI RGATCY 1 cut(s) 315
MluCI AATT 5 cut(s) 46, 75, 135, 236, 265
Mly113I GGCGCC 1 cut(s) 424
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 1 cut(s) 457
MnlI CCTC 6 cut(s) 114, 133, 352, 356, 392, 437
MseI TTAA 2 cut(s) 351, 393
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 1 cut(s) 407
NarI GGCGCC 1 cut(s) 424
NdeII GATC 2 cut(s) 315, 334
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 377
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PleI GAGTC 1 cut(s) 310
PluTI GGCGCC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 453
PsuI RGATCY 1 cut(s) 315
RsaI GTAC 2 cut(s) 130, 210
RsaNI GTAC 2 cut(s) 129, 209
SaqAI TTAA 2 cut(s) 351, 393
Sau3AI GATC 2 cut(s) 315, 334
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 1 cut(s) 466
SetI ASST 9 cut(s) 63, 89, 103, 154, 202, 222, 384, 399, 442
SfoI GGCGCC 1 cut(s) 425
Sse9I AATT 5 cut(s) 46, 75, 135, 236, 265
SsiI CCGC 1 cut(s) 213
SspDI GGCGCC 1 cut(s) 423
SspMI CTAG 2 cut(s) 26, 153
StyD4I CCNGG 1 cut(s) 464
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 417
TasI AATT 5 cut(s) 46, 75, 135, 236, 265
Tru1I TTAA 2 cut(s) 351, 393
Tru9I TTAA 2 cut(s) 351, 393
TscAI CASTG 1 cut(s) 422
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspRI CASTG 1 cut(s) 422
XapI RAATTY 1 cut(s) 236
XspI CTAG 2 cut(s) 26, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.