Rw3G023330

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000194
Physical Location & Seq
Forward (+)
29214311 .. 29216810
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G023330.1

Sequence Viewer

Length: 2040 bp
ATGTCTGAACTTATTTCGGAGAACCAGTCTGGTTTCGTCTCAGGTAGACAGATTCAGGATAATATCATTGTGGCTCATGAATTATTTCATTATCTCAAGCTCCAACTTTCCTTGTCAGTCTTGGTGAATAGGAAACTAGGACCTTTCTTTAAGCCGACTAGAGGCCTCCGACAGGGATATCCACTATCTCCTTTTCTCTTTTTGTTTGTTAATGATGTTCTCTGCCAAATTATTCGGAAACTTACAATGGTTAATATTCTTCAGGCTGTCCAGATTGGTTGTTCAGGACCAAAAGTTAGTCATCTTTTCTTTGCTGAAGATTCTCTATTCTTCCTCAGAGCAACAATTGCGAATTGTGAAGTCCTTTCTGATGTTCTGCATCACTATTGCTCAGCCTCAGGTCAACTTATTAACACTGATAAGTCATCTCTCTACTTCTCTCCCAATAATTTACCTCAGATTGTGCAACTTTTGAGTTTTATTTTGAGAATGCAAGCGGTGGATGATCCGGGGAAATATTTAGGTCTCCCAACTATTTGGAATAGATCCAAAATTTTGGCTCTTGCTTTTGTCCGGGATAATATTCTGCAGAAAATCAAAGGTTGGAAACAGGCCACCTTATCACCTGCGGGAAAAGAGATCATGATCAAATCGGTGGCAACTTCCATTCCTGCTTATCCCATGTCTTGTTTCAAATTCCCAAAGTCTTTATGCTCTCAGATCAACTCTGCTTTAGCTCGTTTTTGGTGGGGAAACTCTCAGGACAATGGGCTTCATTGGAAAGATTGGAAGAGTCTTGGCACTCCTAAATCTTCTGGTGGTTTAGGTTTCCGGGATTTAGAATCTTTTAATCTGGCTTTACTTGCAAAACAAGCTTGGAGAATCATGGAGGCCCCTTCTTCCTTGTGGGTTCGGGTTCTCAAGGCTCGTTACTTCCTTTCTTCGTCTTTTTGGACAGCCAGGAAAGGCGTAACTTCTTCTTGGATTTGGTCTAGCTTATTGGAAGCTCGTCAACTCATTGTTCAAGGCTCTTTATGGAAGGTTGGTAATGGTCTCTCTATTGATGTTTGGTCTGACAGATGGATTCCCAACAAAGTTGAGACTTGCTCGGATTCTTATGGTACTCACCCTCCCCTCTTGGTTAATACTCTAGTTGATGGTGCTTCTTGTGTTTGGAATCTTTCTTCTGTTAACCATATTCTCTCCACAAGTGATCAGGCTGCAATCCAAGCTATTCCCTTGCTTGATAGAATCTTTGCAGATTCTTTGATTTGGCCCCACAACAAATCAGGTACTTATTCCGTCAAGTCTGGCTATCATTTGGCTTACTCCAAGCTTCCTACTCCGGTTATTTTGAAAGCCTCTACTTCTCATTCGGTGCCTGATAAAGTTTGGAAGTGTATTTGGGGAATCTCTTCCCTTCCTAAAATTAAACTGTTTTTATGGAGAGTGGTGCGTAATTTTGTGGCCACAAAGGCCAATTTGCATTTTCGACACTTATCGACTACACCACTTTGCCCTCTTTGTCAGTCTTTCCCGGAAACAATAGAGCCTGGTTTGCCCACCCTTTGGGTAACCAGGTTCCACGCTTCGTGGAACTCCCATTCTCTCAATTGTGGTTTGGCAGCTGTTCTTCGAGATTCAAATGGTCTATTACTGGATGGTTTAGCGTCCGAAGCCAAATCTACTTCAGCGGAGGCTGCAGAAGCTCAAGCCATTCTTCTGGGTCTACGTTTGGCTAAATCTAATTCCCTCGTCTCCTTTTCTATGGAAGCTGATTGCCTTTCTCTTGTATCAGCTTTGAAATCCCCGAAGGGAGTGGTTTCTTGGTCTTCTGCCTCTTGGTTCAGACAGATCAAGTTTCTGGCTTCTTCCTTTTCTTCTATCAACTGGTCTTGGATCAGTAGGGAAGCAAATAAGGCAGCTGATCATGTTGCTCACCTTGCTTCAAGGTCGGAGTGTCCTCTGAATTGGATTCATAATCCACCTCCAACCCTCCTTCACATCTTGGTGTCTGATGCTGTTTCAGCTCCCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

679

Amino Acids

75.38

Weight (kDa)

9.48

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 41 - 176 7.6e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 457 - 517 3.9e-10 zinc-binding in reverse transcriptase
RVT_3 PF13456 528 - 648 3e-22 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 1378
AccB7I CCANNNNNTGG 1 cut(s) 1569
AccI GTMKAC 2 cut(s) 46, 1729
AciI CCGC 3 cut(s) 497, 629, 1694
AclWI GGATC 3 cut(s) 500, 540, 1907
AcoI YGGCCR 1 cut(s) 1467
AcsI RAATTY 2 cut(s) 552, 695
AcuI CTGAAG 3 cut(s) 245, 336, 1674
AfaI GTAC 2 cut(s) 1123, 1294
AfiI CCNNNNNNNGG 3 cut(s) 161, 172, 1569
AgsI TTSAA 6 cut(s) 694, 1025, 1357, 1644, 1804, 1950
AjnI CCWGG 3 cut(s) 959, 1552, 1577
Alw26I GTCTC 5 cut(s) 43, 530, 1058, 1094, 1762
AlwI GGATC 3 cut(s) 500, 540, 1907
AoxI GGCC 6 cut(s) 163, 612, 891, 1274, 1467, 1476
ApeKI GCWGC 4 cut(s) 1220, 1625, 1700, 1922
ApoI RAATTY 2 cut(s) 552, 695
Asp700I GAANNNNTTC 2 cut(s) 84, 1414
AspS9I GGNCC 4 cut(s) 140, 287, 892, 1275
AsuC2I CCSGG 4 cut(s) 510, 575, 833, 1538
AsuHPI GGTGA 4 cut(s) 136, 615, 1118, 1931
AvaII GGWCC 2 cut(s) 140, 287
AxyI CCTNAGG 1 cut(s) 397
BalI TGGCCA 1 cut(s) 1469
BanI GGYRCC 1 cut(s) 1378
BbsI GAAGAC 1 cut(s) 1824
BbvI GCAGC 4 cut(s) 1207, 1637, 1687, 1934
BccI CCATC 3 cut(s) 1074, 1151, 1655
BciT130I CCWGG 3 cut(s) 961, 1554, 1579
BclI TGATCA 3 cut(s) 645, 1213, 1927
BcnI CCSGG 4 cut(s) 510, 575, 833, 1538
BcoDI GTCTC 5 cut(s) 43, 530, 1058, 1094, 1762
BfaI CTAG 4 cut(s) 137, 159, 993, 1151
BfmI CTRYAG 2 cut(s) 587, 1701
BfuAI ACCTGC 1 cut(s) 634
BglI GCCNNNNNGGC 1 cut(s) 1475
BisI GCNGC 4 cut(s) 1221, 1626, 1701, 1923
BlpI GCTNAGC 1 cut(s) 391
BlsI GCNGC 4 cut(s) 1222, 1627, 1702, 1924
Bme1390I CCNGG 7 cut(s) 510, 575, 833, 961, 1538, 1554, 1579
Bme18I GGWCC 2 cut(s) 140, 287
BmgT120I GGNCC 4 cut(s) 140, 287, 892, 1275
BmiI GGNNCC 4 cut(s) 894, 1277, 1380, 1583
BmrFI CCNGG 7 cut(s) 510, 575, 833, 961, 1538, 1554, 1579
BmsI GCATC 2 cut(s) 388, 2008
BpiI GAAGAC 1 cut(s) 1824
BplI GAGNNNNNCTC 2 cut(s) 1091, 1123
Bpu1102I GCTNAGC 1 cut(s) 391
BpuEI CTTGAG 3 cut(s) 80, 905, 1695
BpuMI CCSGG 4 cut(s) 510, 575, 833, 1538
BsaBI GATNNNNATC 1 cut(s) 644
BsaI GGTCTC 2 cut(s) 530, 1058
BsaJI CCNNGG 1 cut(s) 509
BsaWI WCCGGW 1 cut(s) 1345
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 1114, 1144
Bsc4I CCNNNNNNNGG 3 cut(s) 161, 172, 1569
Bse1I ACTGG 3 cut(s) 25, 1662, 1895
Bse21I CCTNAGG 1 cut(s) 397
Bse8I GATNNNNATC 1 cut(s) 644
BseBI CCWGG 3 cut(s) 961, 1554, 1579
BseDI CCNNGG 1 cut(s) 509
BseGI GGATG 2 cut(s) 508, 1666
BseJI GATNNNNATC 1 cut(s) 644
BseLI CCNNNNNNNGG 3 cut(s) 161, 172, 1569
BseMII CTCAG 7 cut(s) 54, 349, 405, 411, 470, 731, 773
BseNI ACTGG 3 cut(s) 25, 1662, 1895
BseXI GCAGC 4 cut(s) 1207, 1637, 1687, 1934
BshFI GGCC 6 cut(s) 165, 614, 893, 1276, 1469, 1478
BshNI GGYRCC 1 cut(s) 1378
BsiSI CCGG 5 cut(s) 509, 574, 832, 1346, 1538
BslI CCNNNNNNNGG 3 cut(s) 161, 172, 1569
BsmAI GTCTC 5 cut(s) 43, 530, 1058, 1094, 1762
BsmBI CGTCTC 2 cut(s) 43, 1762
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 6 cut(s) 165, 614, 893, 1276, 1469, 1478
Bso31I GGTCTC 2 cut(s) 530, 1058
Bsp143I GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
Bsp1720I GCTNAGC 1 cut(s) 391
BspACI CCGC 3 cut(s) 497, 629, 1694
BspANI GGCC 6 cut(s) 165, 614, 893, 1276, 1469, 1478
BspCNI CTCAG 7 cut(s) 53, 348, 404, 410, 469, 730, 772
BspHI TCATGA 2 cut(s) 76, 642
BspLI GGNNCC 4 cut(s) 894, 1277, 1380, 1583
BspMAI CTGCAG 2 cut(s) 591, 1705
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 500, 540, 1907
BspT107I GGYRCC 1 cut(s) 1378
BspTNI GGTCTC 2 cut(s) 530, 1058
BsrI ACTGG 3 cut(s) 25, 1662, 1895
BssECI CCNNGG 1 cut(s) 509
BssMI GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
Bst2UI CCWGG 3 cut(s) 961, 1554, 1579
Bst4CI ACNGT 1 cut(s) 1437
Bst6I CTCTTC 2 cut(s) 785, 1420
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 495
BstDEI CTNAG 7 cut(s) 40, 335, 391, 397, 456, 717, 759
BstEII GGTNACC 1 cut(s) 1573
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 2 cut(s) 508, 1666
BstKTI GATC 9 cut(s) 508, 548, 642, 648, 723, 1216, 1857, 1902, 1930
BstMAI GTCTC 5 cut(s) 43, 530, 1058, 1094, 1762
BstMBI GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
BstNI CCWGG 3 cut(s) 961, 1554, 1579
BstPI GGTNACC 1 cut(s) 1573
BstSCI CCNGG 7 cut(s) 508, 573, 831, 959, 1536, 1552, 1577
BstSFI CTRYAG 2 cut(s) 587, 1701
BstV1I GCAGC 4 cut(s) 1207, 1637, 1687, 1934
BstV2I GAAGAC 1 cut(s) 1824
BstX2I RGATCY 1 cut(s) 545
BstXI CCANNNNNNTGG 3 cut(s) 537, 556, 1723
BstYI RGATCY 1 cut(s) 545
Bsu36I CCTNAGG 1 cut(s) 397
BsuRI GGCC 6 cut(s) 165, 614, 893, 1276, 1469, 1478
BtsCI GGATG 2 cut(s) 508, 1666
BtsIMutI CAGTG 1 cut(s) 414
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 1 cut(s) 495
CciI TCATGA 2 cut(s) 76, 642
Cfr13I GGNCC 4 cut(s) 140, 287, 892, 1275
CseI GACGC 1 cut(s) 1659
CsiI ACCWGGT 1 cut(s) 1577
Csp6I GTAC 2 cut(s) 1122, 1293
CviAII CATG 6 cut(s) 77, 643, 682, 886, 1931, 2037
CviQI GTAC 2 cut(s) 1122, 1293
DdeI CTNAG 7 cut(s) 40, 335, 391, 397, 456, 717, 759
DpnI GATC 9 cut(s) 507, 547, 641, 647, 722, 1215, 1856, 1901, 1929
DpnII GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
EaeI YGGCCR 1 cut(s) 1467
Eam1104I CTCTTC 2 cut(s) 785, 1420
EarI CTCTTC 2 cut(s) 785, 1420
Eco147I AGGCCT 1 cut(s) 165
Eco31I GGTCTC 2 cut(s) 530, 1058
Eco32I GATATC 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 140, 287
Eco57I CTGAAG 3 cut(s) 245, 336, 1674
Eco81I CCTNAGG 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 1573
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoO109I RGGNCCY 2 cut(s) 140, 892
EcoO65I GGTNACC 1 cut(s) 1573
EcoRII CCWGG 3 cut(s) 959, 1552, 1577
EcoRV GATATC 1 cut(s) 179
Esp3I CGTCTC 2 cut(s) 43, 1762
FaeI CATG 6 cut(s) 80, 646, 685, 889, 1934, 2040
FalI AAGNNNNNCTT 2 cut(s) 1704, 1736
FatI CATG 6 cut(s) 76, 642, 681, 885, 1930, 2036
FauI CCCGC 1 cut(s) 622
FbaI TGATCA 3 cut(s) 645, 1213, 1927
FblI GTMKAC 2 cut(s) 46, 1729
Fnu4HI GCNGC 4 cut(s) 1221, 1626, 1701, 1923
FokI GGATG 2 cut(s) 515, 1673
Fsp4HI GCNGC 4 cut(s) 1221, 1626, 1701, 1923
FspBI CTAG 4 cut(s) 137, 159, 993, 1151
GluI GCNGC 4 cut(s) 1221, 1626, 1701, 1923
HaeIII GGCC 6 cut(s) 165, 614, 893, 1276, 1469, 1478
HapII CCGG 5 cut(s) 509, 574, 832, 1346, 1538
HgaI GACGC 1 cut(s) 1659
Hin1II CATG 6 cut(s) 80, 646, 685, 889, 1934, 2040
HincII GTYRAC 3 cut(s) 404, 1013, 1192
HindII GTYRAC 3 cut(s) 404, 1013, 1192
HindIII AAGCTT 2 cut(s) 873, 1334
HpaI GTTAAC 1 cut(s) 1192
HpaII CCGG 5 cut(s) 509, 574, 832, 1346, 1538
HphI GGTGA 4 cut(s) 136, 615, 1118, 1931
Hpy166II GTNNAC 5 cut(s) 47, 404, 1013, 1192, 1730
Hpy188III TCNNGA 7 cut(s) 56, 77, 271, 285, 643, 761, 1637
Hpy8I GTNNAC 5 cut(s) 47, 404, 1013, 1192, 1730
HpyAV CCTTC 5 cut(s) 906, 1033, 1430, 1807, 2009
HpyCH4III ACNGT 1 cut(s) 1437
HpyCH4IV ACGT 1 cut(s) 1732
HpyCH4V TGCA 9 cut(s) 379, 466, 493, 589, 866, 1223, 1259, 1486, 1703
HpyF3I CTNAG 7 cut(s) 40, 335, 391, 397, 456, 717, 759
HpySE526I ACGT 1 cut(s) 1732
Hsp92II CATG 6 cut(s) 80, 646, 685, 889, 1934, 2040
Ksp22I TGATCA 3 cut(s) 645, 1213, 1927
KspAI GTTAAC 1 cut(s) 1192
Kzo9I GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
LmnI GCTCC 2 cut(s) 105, 2035
Lsp1109I GCAGC 4 cut(s) 1207, 1637, 1687, 1934
LweI GCATC 2 cut(s) 388, 2008
MabI ACCWGGT 1 cut(s) 1577
MaeI CTAG 4 cut(s) 137, 159, 993, 1151
MaeII ACGT 1 cut(s) 1732
MaeIII GTNAC 3 cut(s) 929, 970, 1573
MalI GATC 9 cut(s) 507, 547, 641, 647, 722, 1215, 1856, 1901, 1929
MboI GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
MfeI CAATTG 2 cut(s) 345, 1612
MflI RGATCY 1 cut(s) 545
MlsI TGGCCA 1 cut(s) 1469
MluNI TGGCCA 1 cut(s) 1469
MlyI GAGTC 1 cut(s) 802
MmeI TCCRAC 5 cut(s) 127, 193, 584, 1935, 2015
Mox20I TGGCCA 1 cut(s) 1469
MroXI GAANNNNTTC 2 cut(s) 84, 1414
MscI TGGCCA 1 cut(s) 1469
MseI TTAA 8 cut(s) 150, 210, 252, 411, 849, 1143, 1191, 1431
MslI CAYNNNNRTG 1 cut(s) 2009
Msp20I TGGCCA 1 cut(s) 1469
MspA1I CMGCKG 3 cut(s) 1628, 1694, 1925
MspI CCGG 5 cut(s) 509, 574, 832, 1346, 1538
MspR9I CCNGG 7 cut(s) 510, 575, 833, 961, 1538, 1554, 1579
MunI CAATTG 2 cut(s) 345, 1612
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 3 cut(s) 961, 1554, 1579
NciI CCSGG 4 cut(s) 510, 575, 833, 1538
NdeII GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
NlaIII CATG 6 cut(s) 80, 646, 685, 889, 1934, 2040
NlaIV GGNNCC 4 cut(s) 894, 1277, 1380, 1583
PagI TCATGA 2 cut(s) 76, 642
PaqCI CACCTGC 1 cut(s) 634
PceI AGGCCT 1 cut(s) 165
PctI GAATGC 1 cut(s) 495
PdmI GAANNNNTTC 2 cut(s) 84, 1414
PflMI CCANNNNNTGG 1 cut(s) 1569
PfoI TCCNGGA 3 cut(s) 573, 831, 1536
PkrI GCNGC 4 cut(s) 1222, 1627, 1702, 1924
PleI GAGTC 1 cut(s) 801
PpsI GAGTC 1 cut(s) 801
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
Psp6I CCWGG 3 cut(s) 959, 1552, 1577
PspEI GGTNACC 1 cut(s) 1573
PspGI CCWGG 3 cut(s) 959, 1552, 1577
PspN4I GGNNCC 4 cut(s) 894, 1277, 1380, 1583
PspPI GGNCC 4 cut(s) 140, 287, 892, 1275
PspPPI RGGWCCY 1 cut(s) 140
PstI CTGCAG 2 cut(s) 591, 1705
PsuI RGATCY 1 cut(s) 545
PvuII CAGCTG 2 cut(s) 1628, 1925
RsaI GTAC 2 cut(s) 1123, 1294
RsaNI GTAC 2 cut(s) 1122, 1293
RseI CAYNNNNRTG 1 cut(s) 2009
SaqAI TTAA 8 cut(s) 150, 210, 252, 411, 849, 1143, 1191, 1431
SatI GCNGC 4 cut(s) 1221, 1626, 1701, 1923
Sau3AI GATC 9 cut(s) 505, 545, 639, 645, 720, 1213, 1854, 1899, 1927
Sau96I GGNCC 4 cut(s) 140, 287, 892, 1275
SchI GAGTC 1 cut(s) 802
ScrFI CCNGG 7 cut(s) 510, 575, 833, 961, 1538, 1554, 1579
SexAI ACCWGGT 1 cut(s) 1577
SfaNI GCATC 2 cut(s) 388, 2008
SfcI CTRYAG 2 cut(s) 587, 1701
SfiI GGCCNNNNNGGCC 1 cut(s) 1475
SinI GGWCC 2 cut(s) 140, 287
SmiMI CAYNNNNRTG 1 cut(s) 2009
SmlI CTYRAG 3 cut(s) 95, 920, 1710
SmoI CTYRAG 3 cut(s) 95, 920, 1710
SseBI AGGCCT 1 cut(s) 165
SsiI CCGC 3 cut(s) 497, 629, 1694
SspI AATATT 3 cut(s) 256, 518, 583
SspMI CTAG 4 cut(s) 137, 159, 993, 1151
StuI AGGCCT 1 cut(s) 165
StyD4I CCNGG 7 cut(s) 508, 573, 831, 959, 1536, 1552, 1577
TaaI ACNGT 1 cut(s) 1437
TaiI ACGT 1 cut(s) 1735
TaqI TCGA 3 cut(s) 1492, 1502, 1636
Tru1I TTAA 8 cut(s) 150, 210, 252, 411, 849, 1143, 1191, 1431
Tru9I TTAA 8 cut(s) 150, 210, 252, 411, 849, 1143, 1191, 1431
TscAI CASTG 1 cut(s) 421
TseI GCWGC 4 cut(s) 1220, 1625, 1700, 1922
TspDTI ATGAA 4 cut(s) 77, 93, 764, 1967
TspGWI ACGGA 1 cut(s) 1291
TspRI CASTG 1 cut(s) 421
Van91I CCANNNNNTGG 1 cut(s) 1569
VpaK11BI GGWCC 2 cut(s) 140, 287
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 2 cut(s) 552, 695
XmiI GTMKAC 2 cut(s) 46, 1729
XmnI GAANNNNTTC 2 cut(s) 84, 1414
XspI CTAG 4 cut(s) 137, 159, 993, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.