AT2G34320

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000194
Physical Location & Seq
Forward (+)
14484959 .. 14485837
879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G34320.1

Sequence Viewer

Length: 879 bp
ATGGCCTATAGACATCTATTTAGAGAGGCGAGCTGTGTGAGATGTCCAGATAGTAGAGAAACAGTGAACCACCTATTATTCAAATGTTGCTTCGCTAGACTTGTCTGGGCTATTTCACCGATCCCAGCATATCCTGAAGGAGAGTGGACTGATTCTTTGTACGCCAATTTGTATTGGGTTCTTAACTTGGAAGTGGAAATTCCAAAGTTGGGAAAAATTGGCAATCTTGTGCCTTGGCTCCTGTGGCGTCTGTGGAAATCACGGAATGAGCTGATGTTTAAAGGAAAGGAGTATGATGCCCCGGAAGTTCTGAGACGAGCGATGGAAGACTTTGAGGAATGGAGTACTAGACGGGAGCTTGAAGGGAAAGCCTCTGGTCCTCAAGTGGAGAGAAATCTTTCGGTGCAATGGAAAGCTCCTCCTTATCAATGGGTGAAGTGTAACACAGACGCTACATGGCAGTTGGAAAATCCTAGGTGTGGTATTGGATGGATCCTCCGTAACGAGAGTGGAGGAGTCTTGTGGATGGGAGCAAGAGCTCTGCCAAGGACGAAGAATGTGTTGGAAGCAGAGCTGGAAGCTTTGCGGTGGGCAGTTCTCACGATGAGCAGATTTAACTATAAAAGAATAATTTTTGAATCTGATGCTCAAGCTCTAGTTAATCTGCTGAATTCTGATGACTTTTGGCCAACCCTTCAACCGGCTTTGGAAGACATTCAGCAGCTGCTCCATCATTTTGAAGAGGTCAAGTTCGAGTTCACTCCAAGAGGCGGTAACAAAGTGGCGGATAGAATAGCACGGGAATCTATTTCGTTCTCGAATTATGATCCCAAATTGTTTTCTATTGTGCCACAGTGGCTTAGAAGCACTTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

292

Amino Acids

34.22

Weight (kDa)

6.92

Isoelectric Point (pI)

43.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 148 - 268 2e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 586, 771, 785
AclWI GGATC 4 cut(s) 115, 487, 500, 821
AcoI YGGCCR 1 cut(s) 686
AcsI RAATTY 2 cut(s) 198, 670
AcuI CTGAAG 1 cut(s) 156
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 2 cut(s) 161, 346
AfiI CCNNNNNNNGG 4 cut(s) 209, 479, 700, 770
AgsI TTSAA 5 cut(s) 82, 362, 638, 698, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 545, 577
AluBI AGCT 9 cut(s) 33, 271, 358, 416, 539, 574, 581, 653, 724
AluI AGCT 9 cut(s) 33, 271, 358, 416, 539, 574, 581, 653, 724
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 4 cut(s) 115, 487, 500, 821
AlwNI CAGNNNCTG 1 cut(s) 724
AoxI GGCC 2 cut(s) 3, 686
ApeKI GCWGC 2 cut(s) 721, 724
ApoI RAATTY 2 cut(s) 198, 670
ArsI GACNNNNNNTTYG 2 cut(s) 139, 171
Asp700I GAANNNNTTC 2 cut(s) 397, 714
AspA2I CCTAGG 1 cut(s) 473
AspS9I GGNCC 1 cut(s) 377
AsuC2I CCSGG 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 108, 445
AvaII GGWCC 1 cut(s) 377
AvrII CCTAGG 1 cut(s) 473
BalI TGGCCA 1 cut(s) 688
BamHI GGATCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 541
BbsI GAAGAC 2 cut(s) 333, 717
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 2 cut(s) 711, 733
BccI CCATC 4 cut(s) 316, 483, 520, 738
BcnI CCSGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 307
BfaI CTAG 4 cut(s) 96, 348, 474, 656
BfmI CTRYAG 1 cut(s) 7
BglI GCCNNNNNGGC 1 cut(s) 856
BisI GCNGC 2 cut(s) 722, 725
BlnI CCTAGG 1 cut(s) 473
BlsI GCNGC 2 cut(s) 723, 726
BmcAI AGTACT 1 cut(s) 346
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 2 cut(s) 239, 494
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 2 cut(s) 286, 634
BpiI GAAGAC 2 cut(s) 333, 717
BpuEI CTTGAG 2 cut(s) 366, 633
BpuMI CCSGG 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 4 cut(s) 233, 300, 473, 545
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 479, 700, 770
Bse118I RCCGGY 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 413
BseDI CCNNGG 4 cut(s) 233, 300, 473, 545
BseGI GGATG 2 cut(s) 494, 531
BseLI CCNNNNNNNGG 4 cut(s) 209, 479, 700, 770
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 408, 528
BseXI GCAGC 2 cut(s) 711, 733
BseYI CCCAGC 1 cut(s) 124
BshFI GGCC 2 cut(s) 5, 688
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 302, 701
BslI CCNNNNNNNGG 4 cut(s) 209, 479, 700, 770
BsmAI GTCTC 1 cut(s) 307
BsmBI CGTCTC 1 cut(s) 307
BsnI GGCC 2 cut(s) 5, 688
Bsp1286I GDGCHC 1 cut(s) 541
Bsp143I GATC 3 cut(s) 120, 492, 826
BspACI CCGC 3 cut(s) 586, 771, 785
BspANI GGCC 2 cut(s) 5, 688
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 239, 494
BspPI GGATC 4 cut(s) 115, 487, 500, 821
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 700
BssAI RCCGGY 1 cut(s) 700
BssECI CCNNGG 4 cut(s) 233, 300, 473, 545
BssMI GATC 3 cut(s) 120, 492, 826
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 3 cut(s) 233, 473, 545
Bst4CI ACNGT 2 cut(s) 64, 855
Bst6I CTCTTC 1 cut(s) 735
BstACI GRCGYC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 311, 860
BstF5I GGATG 2 cut(s) 494, 531
BstKTI GATC 3 cut(s) 123, 495, 829
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 3 cut(s) 120, 492, 826
BstMWI GCNNNNNNNGC 2 cut(s) 244, 856
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 7
BstV1I GCAGC 2 cut(s) 711, 733
BstV2I GAAGAC 2 cut(s) 333, 717
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuRI GGCC 2 cut(s) 5, 688
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 2 cut(s) 494, 531
BtsIMutI CAGTG 2 cut(s) 69, 860
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 724
Cfr10I RCCGGY 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 2 cut(s) 236, 458
Csp6I GTAC 2 cut(s) 160, 345
CviAII CATG 1 cut(s) 456
CviQI GTAC 2 cut(s) 160, 345
DdeI CTNAG 2 cut(s) 311, 860
DpnI GATC 3 cut(s) 122, 494, 828
DpnII GATC 3 cut(s) 120, 492, 826
DraI TTTAAA 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 686
Eam1104I CTCTTC 1 cut(s) 735
EarI CTCTTC 1 cut(s) 735
EciI GGCGGA 1 cut(s) 800
Ecl136II GAGCTC 1 cut(s) 539
Eco130I CCWWGG 3 cut(s) 233, 473, 545
Eco24I GRGCYC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 377
Eco53kI GAGCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 233, 473, 545
EcoT38I GRGCYC 1 cut(s) 541
ErhI CCWWGG 3 cut(s) 233, 473, 545
Esp3I CGTCTC 1 cut(s) 307
FaeI CATG 1 cut(s) 459
FaiI YATR 6 cut(s) 9, 130, 294, 457, 621, 825
FatI CATG 1 cut(s) 455
Fnu4HI GCNGC 2 cut(s) 722, 725
FokI GGATG 2 cut(s) 501, 538
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 2 cut(s) 722, 725
FspBI CTAG 4 cut(s) 96, 348, 474, 656
GluI GCNGC 2 cut(s) 722, 725
GsaI CCCAGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 5, 688
HapII CCGG 2 cut(s) 302, 701
HgaI GACGC 2 cut(s) 236, 458
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 4 cut(s) 152, 516, 638, 803
HpaII CCGG 2 cut(s) 302, 701
HphI GGTGA 2 cut(s) 108, 445
Hpy166II GTNNAC 3 cut(s) 67, 147, 759
Hpy188I TCNGA 3 cut(s) 312, 643, 676
Hpy188III TCNNGA 4 cut(s) 47, 134, 601, 817
Hpy8I GTNNAC 3 cut(s) 67, 147, 759
HpyAV CCTTC 3 cut(s) 131, 356, 704
HpyCH4III ACNGT 2 cut(s) 64, 855
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 244, 856
HpyF3I CTNAG 2 cut(s) 311, 860
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 1 cut(s) 459
Kzo9I GATC 3 cut(s) 120, 492, 826
LmnI GCTCC 5 cut(s) 243, 355, 421, 530, 732
LpnPI CCDG 9 cut(s) 60, 91, 138, 147, 254, 315, 360, 560, 714
Lsp1109I GCAGC 2 cut(s) 711, 733
LweI GCATC 2 cut(s) 286, 634
MaeI CTAG 4 cut(s) 96, 348, 474, 656
MaeIII GTNAC 3 cut(s) 440, 500, 773
MalI GATC 3 cut(s) 122, 494, 828
MboI GATC 3 cut(s) 120, 492, 826
MboII GAAGA 4 cut(s) 338, 565, 722, 752
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 541
MlsI TGGCCA 1 cut(s) 688
MluCI AATT 7 cut(s) 166, 198, 216, 630, 670, 820, 833
MluNI TGGCCA 1 cut(s) 688
MlyI GAGTC 1 cut(s) 525
MmeI TCCRAC 2 cut(s) 444, 543
MnlI CCTC 9 cut(s) 19, 328, 382, 390, 429, 506, 506, 736, 761
Mox20I TGGCCA 1 cut(s) 688
MroXI GAANNNNTTC 2 cut(s) 397, 714
MscI TGGCCA 1 cut(s) 688
MseI TTAA 5 cut(s) 183, 279, 615, 660, 877
Msp20I TGGCCA 1 cut(s) 688
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 2 cut(s) 302, 701
MspR9I CCNGG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 244, 856
NciI CCSGG 1 cut(s) 302
NdeII GATC 3 cut(s) 120, 492, 826
NlaIII CATG 1 cut(s) 459
NlaIV GGNNCC 2 cut(s) 239, 494
PdmI GAANNNNTTC 2 cut(s) 397, 714
PfeI GAWTC 3 cut(s) 152, 638, 803
PkrI GCNGC 2 cut(s) 723, 726
PleI GAGTC 1 cut(s) 524
PpsI GAGTC 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 239, 494
PspPI GGNCC 1 cut(s) 377
PstNI CAGNNNCTG 1 cut(s) 724
PsuI RGATCY 1 cut(s) 492
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 161, 346
RsaNI GTAC 2 cut(s) 160, 345
SacI GAGCTC 1 cut(s) 541
SaqAI TTAA 5 cut(s) 183, 279, 615, 660, 877
SatI GCNGC 2 cut(s) 722, 725
Sau3AI GATC 3 cut(s) 120, 492, 826
Sau96I GGNCC 1 cut(s) 377
ScaI AGTACT 1 cut(s) 346
SchI GAGTC 1 cut(s) 525
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 2 cut(s) 286, 634
SfcI CTRYAG 1 cut(s) 7
SinI GGWCC 1 cut(s) 377
SmlI CTYRAG 2 cut(s) 381, 648
SmoI CTYRAG 2 cut(s) 381, 648
Sse9I AATT 7 cut(s) 166, 198, 216, 630, 670, 820, 833
SsiI CCGC 3 cut(s) 586, 771, 785
SspMI CTAG 4 cut(s) 96, 348, 474, 656
SstI GAGCTC 1 cut(s) 541
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 3 cut(s) 233, 473, 545
TaaI ACNGT 2 cut(s) 64, 855
TaqI TCGA 2 cut(s) 753, 818
TasI AATT 7 cut(s) 166, 198, 216, 630, 670, 820, 833
TatI WGTACW 1 cut(s) 344
TfiI GAWTC 3 cut(s) 152, 638, 803
Tru1I TTAA 5 cut(s) 183, 279, 615, 660, 877
Tru9I TTAA 5 cut(s) 183, 279, 615, 660, 877
TscAI CASTG 2 cut(s) 69, 860
TseI GCWGC 2 cut(s) 721, 724
TspGWI ACGGA 2 cut(s) 277, 488
TspRI CASTG 2 cut(s) 69, 860
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 2 cut(s) 198, 670
XmaJI CCTAGG 1 cut(s) 473
XmnI GAANNNNTTC 2 cut(s) 397, 714
XspI CTAG 4 cut(s) 96, 348, 474, 656
ZrmI AGTACT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.