Rmu_sc0004476.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004476.1
OG0000194
Physical Location & Seq
Reverse (-)
7100 .. 8950
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004476.1_g000002.1.cds

Sequence Viewer

Length: 1092 bp
atgataagcctttcttggaactgtcagggcttggggaagtccttgacagctcaaacactaagggagctaacccactcccattgtcctaattttatttttctatcggaaactcatcaggaaagcacttttgttgataagttacgttgtcaactggggtattcggaaggttttaatgttgatcctatctctactgctggaggattgagtctttggtggaatcccaattttcatgtagagattgtcaatttttcaaggattgggtcagaccataaccctatcttgctaatcactaatccaagattaagcaagcataaactcaccttcaagtttgaagcattttgggctgatgaggatgatgcaaagtctcttattgaggatagctggaattctgatccttgtcttccatcactcactcagtggtcactgaatctaaacaagtgccgagtgaatctgaagagatggagtagaagtaaattccctaagtgtgggatggggttccgggaactacaacattttaatcttgcccttctttccaagcaatgctggtgccttataaatgaacctgagtccttatgggctagggtcctaaaagccagatctctcatcgactgggatacccactcatgggttctggacaatattatgcatctcattcagccttctgagatcaataagatccgctcgattcctattggagatggggagggccaggataatctgatctggccctggaataaggatgggcagtttactgtgcgctcaaggtaccattggattcattccaaactcatcatctctcatccacctaactgtggatcctctcattttgtggatactaaagcttggaatttgatttggaaaattgagactctgcctaagattaagaacttcctctggaaggtcctcaatggagcagcccctacaatggctaacctatataggagaaagttggccccttctcctctttgtccaagttgtggtgcagaggaagaaacttttgaacacttattattgctatgtccctgggtggatttagtttggtttggctttcctcttgggatcagaattgataagcaaaatcacaacttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

42.0

Weight (kDa)

8.23

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
Acc65I GGTACC 1 cut(s) 765
AccB1I GGYRCC 2 cut(s) 546, 765
AccB7I CCANNNNNTGG 1 cut(s) 977
AccBSI CCGCTC 1 cut(s) 681
AciI CCGC 1 cut(s) 679
AclWI GGATC 6 cut(s) 173, 386, 670, 810, 823, 1067
AcsI RAATTY 3 cut(s) 385, 473, 847
AcuI CTGAAG 1 cut(s) 473
AdeI CACNNNGTG 1 cut(s) 417
AfaI GTAC 1 cut(s) 767
AfiI CCNNNNNNNGG 7 cut(s) 485, 624, 625, 812, 898, 925, 977
AgsI TTSAA 4 cut(s) 252, 325, 332, 1001
AjnI CCWGG 3 cut(s) 708, 728, 1022
AluBI AGCT 4 cut(s) 50, 67, 381, 842
AluI AGCT 4 cut(s) 50, 67, 381, 842
Alw26I GTCTC 2 cut(s) 369, 860
AlwI GGATC 6 cut(s) 173, 386, 670, 810, 823, 1067
AoxI GGCC 3 cut(s) 706, 725, 951
ApeKI GCWGC 1 cut(s) 914
ApoI RAATTY 3 cut(s) 385, 473, 847
Asp718I GGTACC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 759
AspS9I GGNCC 5 cut(s) 583, 706, 726, 901, 952
AsuC2I CCSGG 1 cut(s) 500
AsuHPI GGTGA 1 cut(s) 310
AvaII GGWCC 2 cut(s) 583, 901
BamHI GGATCC 1 cut(s) 815
BanI GGYRCC 2 cut(s) 546, 765
BbsI GAAGAC 1 cut(s) 392
BbvI GCAGC 1 cut(s) 926
BccI CCATC 5 cut(s) 412, 453, 484, 692, 734
BciT130I CCWGG 3 cut(s) 710, 730, 1024
BciVI GTATCC 2 cut(s) 607, 826
BcnI CCSGG 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 369, 860
BfaI CTAG 1 cut(s) 579
BfuI GTATCC 2 cut(s) 607, 826
BglII AGATCT 1 cut(s) 596
BisI GCNGC 1 cut(s) 915
BlsI GCNGC 1 cut(s) 916
Bme1390I CCNGG 4 cut(s) 500, 710, 730, 1024
Bme18I GGWCC 2 cut(s) 583, 901
BmgT120I GGNCC 5 cut(s) 583, 706, 726, 901, 952
BmiI GGNNCC 6 cut(s) 497, 548, 584, 767, 817, 954
BmrFI CCNGG 4 cut(s) 500, 710, 730, 1024
BmrI ACTGGG 2 cut(s) 161, 619
BmsI GCATC 2 cut(s) 346, 655
BmuI ACTGGG 2 cut(s) 161, 619
BpiI GAAGAC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 500
BsaJI CCNNGG 3 cut(s) 728, 1022, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 7 cut(s) 485, 624, 625, 812, 898, 925, 977
Bse1I ACTGG 2 cut(s) 156, 614
Bse3DI GCAATG 1 cut(s) 545
BseBI CCWGG 3 cut(s) 710, 730, 1024
BseDI CCNNGG 3 cut(s) 728, 1022, 1023
BseGI GGATG 4 cut(s) 358, 495, 745, 799
BseLI CCNNNNNNNGG 7 cut(s) 485, 624, 625, 812, 898, 925, 977
BseMI GCAATG 1 cut(s) 545
BseMII CTCAG 3 cut(s) 428, 555, 654
BseNI ACTGG 2 cut(s) 156, 614
BseRI GAGGAG 1 cut(s) 951
BseXI GCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 1002
BshFI GGCC 3 cut(s) 708, 727, 953
BshNI GGYRCC 2 cut(s) 546, 765
BsiSI CCGG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 1005
BslI CCNNNNNNNGG 7 cut(s) 485, 624, 625, 812, 898, 925, 977
BsmAI GTCTC 2 cut(s) 369, 860
BsmFI GGGAC 1 cut(s) 1005
BsnI GGCC 3 cut(s) 708, 727, 953
Bsp143I GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
BspACI CCGC 1 cut(s) 679
BspANI GGCC 3 cut(s) 708, 727, 953
BspCNI CTCAG 3 cut(s) 427, 556, 655
BspLI GGNNCC 6 cut(s) 497, 548, 584, 767, 817, 954
BspPI GGATC 6 cut(s) 173, 386, 670, 810, 823, 1067
BspT107I GGYRCC 2 cut(s) 546, 765
BsrBI CCGCTC 1 cut(s) 681
BsrDI GCAATG 1 cut(s) 545
BsrI ACTGG 2 cut(s) 156, 614
BssECI CCNNGG 3 cut(s) 728, 1022, 1023
BssMI GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
Bst2UI CCWGG 3 cut(s) 710, 730, 1024
Bst4CI ACNGT 3 cut(s) 23, 754, 812
Bst6I CTCTTC 1 cut(s) 449
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 6 cut(s) 59, 414, 480, 564, 663, 876
BstENI CCTNNNNNAGG 1 cut(s) 896
BstF5I GGATG 4 cut(s) 358, 495, 745, 799
BstHHI GCGC 1 cut(s) 759
BstKTI GATC 8 cut(s) 181, 394, 599, 669, 678, 723, 818, 1062
BstMAI GTCTC 2 cut(s) 369, 860
BstMBI GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 3 cut(s) 710, 730, 1024
BstSCI CCNGG 4 cut(s) 498, 708, 728, 1022
BstV1I GCAGC 1 cut(s) 926
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 3 cut(s) 596, 675, 815
BstYI RGATCY 3 cut(s) 596, 675, 815
BsuI GTATCC 2 cut(s) 607, 826
BsuRI GGCC 3 cut(s) 708, 727, 953
BtsCI GGATG 4 cut(s) 358, 495, 745, 799
BtsIMutI CAGTG 2 cut(s) 422, 422
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 759
Cfr13I GGNCC 5 cut(s) 583, 706, 726, 901, 952
Csp6I GTAC 1 cut(s) 766
CspCI CAANNNNNGTGG 2 cut(s) 62, 97
CviAII CATG 2 cut(s) 230, 624
CviQI GTAC 1 cut(s) 766
DdeI CTNAG 6 cut(s) 59, 414, 480, 564, 663, 876
DpnI GATC 8 cut(s) 180, 393, 598, 668, 677, 722, 817, 1061
DpnII GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
DraIII CACNNNGTG 1 cut(s) 417
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 583, 901
Eco57I CTGAAG 1 cut(s) 473
EcoNI CCTNNNNNAGG 1 cut(s) 896
EcoO109I RGGNCCY 2 cut(s) 583, 901
EcoRI GAATTC 1 cut(s) 385
EcoRII CCWGG 3 cut(s) 708, 728, 1022
EcoT22I ATGCAT 1 cut(s) 648
FaeI CATG 2 cut(s) 233, 627
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 1005
FatI CATG 2 cut(s) 229, 623
Fnu4HI GCNGC 1 cut(s) 915
FokI GGATG 4 cut(s) 365, 502, 752, 786
Fsp4HI GCNGC 1 cut(s) 915
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 758
GluI GCNGC 1 cut(s) 915
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 708, 727, 953
HapII CCGG 1 cut(s) 499
HhaI GCGC 1 cut(s) 759
Hin1II CATG 2 cut(s) 233, 627
Hin6I GCGC 1 cut(s) 757
HinP1I GCGC 1 cut(s) 757
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 8 cut(s) 205, 217, 427, 448, 566, 685, 775, 868
HpaII CCGG 1 cut(s) 499
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 149, 750
Hpy188I TCNGA 8 cut(s) 106, 163, 265, 391, 453, 664, 720, 1064
Hpy188III TCNNGA 3 cut(s) 116, 632, 895
Hpy8I GTNNAC 2 cut(s) 149, 750
HpyAV CCTTC 6 cut(s) 158, 331, 536, 669, 892, 966
HpyCH4III ACNGT 3 cut(s) 23, 754, 812
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 359, 646, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 6 cut(s) 59, 414, 480, 564, 663, 876
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 2 cut(s) 233, 627
HspAI GCGC 1 cut(s) 757
KpnI GGTACC 1 cut(s) 769
Kzo9I GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
LmnI GCTCC 2 cut(s) 64, 911
Lsp1109I GCAGC 1 cut(s) 926
LweI GCATC 2 cut(s) 346, 655
MaeI CTAG 1 cut(s) 579
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 2 cut(s) 138, 420
MalI GATC 8 cut(s) 180, 393, 598, 668, 677, 722, 817, 1061
MbiI CCGCTC 1 cut(s) 681
MboI GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
MboII GAAGA 3 cut(s) 392, 466, 1001
MflI RGATCY 3 cut(s) 596, 675, 815
MluCI AATT 8 cut(s) 88, 223, 244, 385, 473, 847, 861, 1065
MlyI GAGTC 3 cut(s) 214, 575, 862
Mph1103I ATGCAT 1 cut(s) 648
MseI TTAA 4 cut(s) 171, 302, 516, 882
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 4 cut(s) 500, 710, 730, 1024
MvaI CCWGG 3 cut(s) 710, 730, 1024
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 500
NdeII GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
NlaIII CATG 2 cut(s) 233, 627
NlaIV GGNNCC 6 cut(s) 497, 548, 584, 767, 817, 954
NmeAIII GCCGAG 1 cut(s) 467
NmuCI GTSAC 1 cut(s) 420
NsiI ATGCAT 1 cut(s) 648
PasI CCCWGGG 1 cut(s) 1023
PfeI GAWTC 5 cut(s) 217, 427, 448, 685, 775
PflMI CCANNNNNTGG 1 cut(s) 977
PfoI TCCNGGA 1 cut(s) 498
PkrI GCNGC 1 cut(s) 916
PleI GAGTC 3 cut(s) 213, 574, 862
PpsI GAGTC 3 cut(s) 213, 574, 862
PpuMI RGGWCCY 2 cut(s) 583, 901
PsiI TTATAA 1 cut(s) 554
Psp5II RGGWCCY 2 cut(s) 583, 901
Psp6I CCWGG 3 cut(s) 708, 728, 1022
PspGI CCWGG 3 cut(s) 708, 728, 1022
PspN4I GGNNCC 6 cut(s) 497, 548, 584, 767, 817, 954
PspPI GGNCC 5 cut(s) 583, 706, 726, 901, 952
PspPPI RGGWCCY 2 cut(s) 583, 901
PsuI RGATCY 3 cut(s) 596, 675, 815
RsaI GTAC 1 cut(s) 767
RsaNI GTAC 1 cut(s) 766
SaqAI TTAA 4 cut(s) 171, 302, 516, 882
SatI GCNGC 1 cut(s) 915
Sau3AI GATC 8 cut(s) 178, 391, 596, 666, 675, 720, 815, 1059
Sau96I GGNCC 5 cut(s) 583, 706, 726, 901, 952
SchI GAGTC 3 cut(s) 214, 575, 862
ScrFI CCNGG 4 cut(s) 500, 710, 730, 1024
SfaNI GCATC 2 cut(s) 346, 655
SinI GGWCC 2 cut(s) 583, 901
SmlI CTYRAG 1 cut(s) 760
SmoI CTYRAG 1 cut(s) 760
Sse9I AATT 8 cut(s) 88, 223, 244, 385, 473, 847, 861, 1065
SsiI CCGC 1 cut(s) 679
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 579
StyD4I CCNGG 4 cut(s) 498, 708, 728, 1022
TaaI ACNGT 3 cut(s) 23, 754, 812
TaiI ACGT 1 cut(s) 145
TaqI TCGA 2 cut(s) 606, 683
TasI AATT 8 cut(s) 88, 223, 244, 385, 473, 847, 861, 1065
TfiI GAWTC 5 cut(s) 217, 427, 448, 685, 775
Tru1I TTAA 4 cut(s) 171, 302, 516, 882
Tru9I TTAA 4 cut(s) 171, 302, 516, 882
TscAI CASTG 2 cut(s) 422, 429
TseFI GTSAC 1 cut(s) 420
TseI GCWGC 1 cut(s) 914
Tsp45I GTSAC 1 cut(s) 420
TspDTI ATGAA 3 cut(s) 218, 573, 767
TspRI CASTG 2 cut(s) 422, 429
Van91I CCANNNNNTGG 1 cut(s) 977
VpaK11BI GGWCC 2 cut(s) 583, 901
XagI CCTNNNNNAGG 1 cut(s) 896
XapI RAATTY 3 cut(s) 385, 473, 847
XspI CTAG 1 cut(s) 579
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.