Rmu_sc0000690.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000690.1
OG0000194
Physical Location & Seq
Forward (+)
5521 .. 6144
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000690.1_g000002.1.cds

Sequence Viewer

Length: 624 bp
atgttgtctatggctggtagagaggtgttaatcaagtcagtggctttggctgttaccacctaccctatgaatattttcagatttccgatttcattgtgcaacgagatcaatagttctattgcaaacttctggtggggaaacaatgctcatgggtccaaaatgctttggaaaaattgggcatctttggggaaacctaaacatgatggtggtttgggtttccgtgacctacatgattttaatcttgctgtacttgccaaaccatgctggagaatattacaacaccctactgatttttgggtacaaattttgaaggccaggtattttcctaatactgattttctgaatgctactaagggtcatcgtgcctcttgggcatggtctagtcttgtggaagcaaaggatattattaggcaaggtactaaatggcagactggcaatggagcaaatattagcatttgggttgatgactggcttccatctcctcattctggtcctatttgtattaatgctccaaacacattggatgcttcagtactggttaatgatctatttgctgctgactctttctcttggtgtgtcgatactgacccaaaaatttctttcctgaaagcatttctcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

207

Amino Acids

23.29

Weight (kDa)

8.71

Isoelectric Point (pI)

17.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 303, 594
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 4 cut(s) 249, 300, 418, 534
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 310
AjnI CCWGG 1 cut(s) 314
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 2 cut(s) 303, 594
AseI ATTAAT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 153, 491
AvaII GGWCC 2 cut(s) 153, 491
BbvI GCAGC 1 cut(s) 541
BccI CCATC 2 cut(s) 197, 484
BciT130I CCWGG 1 cut(s) 316
BfaI CTAG 1 cut(s) 381
BglI GCCNNNNNGGC 1 cut(s) 371
BisI GCNGC 1 cut(s) 555
BlsI GCNGC 1 cut(s) 556
BmcAI AGTACT 1 cut(s) 534
Bme1390I CCNGG 1 cut(s) 316
Bme18I GGWCC 2 cut(s) 153, 491
BmgT120I GGNCC 2 cut(s) 153, 491
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 316
BmsI GCATC 2 cut(s) 188, 514
BpmI CTGGAG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 3 cut(s) 436, 473, 540
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 529
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 1 cut(s) 442
BseNI ACTGG 3 cut(s) 436, 473, 540
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 541
BshFI GGCC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 488
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 1 cut(s) 314
Bsp143I GATC 2 cut(s) 105, 544
BspANI GGCC 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 442
BsrI ACTGG 3 cut(s) 436, 473, 540
BssMI GATC 2 cut(s) 105, 544
Bst2UI CCWGG 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 529
BstKTI GATC 2 cut(s) 108, 547
BstMBI GATC 2 cut(s) 105, 544
BstMWI GCNNNNNNNGC 2 cut(s) 251, 371
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 541
BsuRI GGCC 1 cut(s) 314
BtsCI GGATG 1 cut(s) 529
BtsIMutI CAGTG 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 153, 491
Csp6I GTAC 4 cut(s) 248, 299, 417, 533
CviAII CATG 5 cut(s) 149, 200, 230, 261, 375
CviJI RGCY 5 cut(s) 14, 44, 50, 314, 472
CviKI_1 RGCY 5 cut(s) 14, 44, 50, 314, 472
CviQI GTAC 4 cut(s) 248, 299, 417, 533
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 107, 546
DpnII GATC 2 cut(s) 105, 544
Eco47I GGWCC 2 cut(s) 153, 491
Eco57I CTGAAG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 314
FaeI CATG 5 cut(s) 152, 203, 233, 264, 378
FaiI YATR 7 cut(s) 11, 68, 150, 201, 231, 262, 376
FatI CATG 5 cut(s) 148, 199, 229, 260, 374
Fnu4HI GCNGC 1 cut(s) 555
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 1 cut(s) 555
FspBI CTAG 1 cut(s) 381
GluI GCNGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 1 cut(s) 314
Hin1II CATG 5 cut(s) 152, 203, 233, 264, 378
HinfI GANTC 1 cut(s) 560
Hpy188I TCNGA 3 cut(s) 80, 87, 342
Hpy188III TCNNGA 1 cut(s) 604
HpyAV CCTTC 1 cut(s) 304
HpyCH4V TGCA 2 cut(s) 99, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 371
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 5 cut(s) 152, 203, 233, 264, 378
Kzo9I GATC 2 cut(s) 105, 544
LmnI GCTCC 2 cut(s) 440, 514
LpnPI CCDG 9 cut(s) 115, 250, 301, 328, 417, 454, 474, 521, 617
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 2 cut(s) 188, 514
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 52, 221
MalI GATC 2 cut(s) 107, 546
MboI GATC 2 cut(s) 105, 544
MluCI AATT 3 cut(s) 172, 303, 594
MlyI GAGTC 1 cut(s) 554
MnlI CCTC 3 cut(s) 16, 376, 492
MroXI GAANNNNTTC 1 cut(s) 74
MseI TTAA 4 cut(s) 29, 237, 504, 540
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 2 cut(s) 251, 371
NdeII GATC 2 cut(s) 105, 544
NlaIII CATG 5 cut(s) 152, 203, 233, 264, 378
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 221
PctI GAATGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 74
PkrI GCNGC 1 cut(s) 556
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PshBI ATTAAT 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 2 cut(s) 153, 491
RsaI GTAC 4 cut(s) 249, 300, 418, 534
RsaNI GTAC 4 cut(s) 248, 299, 417, 533
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 4 cut(s) 29, 237, 504, 540
SatI GCNGC 1 cut(s) 555
Sau3AI GATC 2 cut(s) 105, 544
Sau96I GGNCC 2 cut(s) 153, 491
ScaI AGTACT 1 cut(s) 534
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 1 cut(s) 316
SetI ASST 6 cut(s) 27, 62, 196, 228, 320, 418
SfaNI GCATC 2 cut(s) 188, 514
SinI GGWCC 2 cut(s) 153, 491
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 3 cut(s) 172, 303, 594
SspI AATATT 3 cut(s) 73, 273, 448
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 314
TaqI TCGA 1 cut(s) 579
TasI AATT 3 cut(s) 172, 303, 594
TatI WGTACW 2 cut(s) 247, 532
Tru1I TTAA 4 cut(s) 29, 237, 504, 540
Tru9I TTAA 4 cut(s) 29, 237, 504, 540
TscAI CASTG 1 cut(s) 45
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 81, 83
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 1 cut(s) 45
VpaK11BI GGWCC 2 cut(s) 153, 491
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 2 cut(s) 303, 594
XmnI GAANNNNTTC 1 cut(s) 74
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.