FvH4_5g18751

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000194
Physical Location & Seq
Forward (+)
10775919 .. 10780014
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18751.t1

Sequence Viewer

Length: 1881 bp
ATGATGTCACTGTCATTCCTGAAACAAGTCAAGGAGGAAATCAAAGATGTTTTGCACGAACTTGAGGAAATTCAGTGTTCTGATCCTCTTGCTAATTGTGTGCGACAAGATGAATTGAATGCCATATTGGGGGATCTCTGGGAGCGAGAAGAAAAATATTGGCATCAAAGATCGCGAGTTGCTTGGTTGAAGGCCGGGGATTCCAATACCCGATTCTTCCATCTCTCTACACTAGAGAAGAGATGTCGAAACCGGATTCTTCGCATCCAGGATGGTGACGGTGTTTGGGTTTCTAGAGAGTACAAGATCAGAAAGGCATTTGAAAAGCAATTTATGGCTATTTTCACATCGGATGGCCCAAGGTATTGGGGGAACGCGATGGAGGGGGTTAGGAGTGTGATTACCGAGGAGATTAATCAAGATTTGATGGCTCCGGTGTTGGAAGAGGAAGTCAGAGCTGCTGTCTTCCATGAGGTTCTCTCACTCCGCTTGACTAAGTGTGTTAGGGATGGTAGCTTGATTGGGATTCGGTTGAGTAGAGGGGGCCCTATCATGTCCCATCTCTTCTTTGCGGATGATGCTCTATTTTTTATCTGGGCTACCCTTGGAAATGCCTCGCGTCTTTCCCTAATTTTCAAGGATTACTATACTGCTTCGGGTCAAGCTATTAGTCAGGATAAGTCCAGTATTTTTTTCTCTCCTAATTCCCCAGAGCAGATGGTTTTTCTCCTGTGTGAATTACTTGGTTTCGATTGTGTTGATGATCCAGGAAAGGAGACTCTTATTAAGTCGGTAGCTATGGCTATTCCAGCCTACACAATGGCATGCTTTAAATTCCCTAAAAATGTGTGTGAGAGTTTTGATTCCCTCTTTGGGAACTTTTGGTGGGGGATGACTCCTAGAGGGAACAAAATTCATTGGCGAAGTTGGGATTTTCTAAGTCAACCTAAGGCTGATGGGGGTTTGGGATTTCGGAATCTTCAGCACTTCAATATGGCACTCTTGGCAAAACAGGTGTGGAAACTTGTGGAGAACCCTACCTCTTTATGGGCAGAGGTCTTAAAGTCTCGGTACTTCCCGGATTGCAACTTTTTTAGTGCACTGAAAGGTTATCGTGCTTCATGGAGTTGGTCTAGTTTATTAGAGGCCAGAGATATTATTCTAGCAGGTTGTTGCTGGCAGGTAGTTAATGGGTCCTCTGTCAGAGTATGGCAGGATAAATGGTTACCTAATCCTTCTCCTAGACTTCTGCCTTCTTCTACTGTGTCGCGACTAACTGCTCATGTGTTGGTTAATCAGCTAATTGATTGGGAGAGAAAGGTATGGAATTTGTCTGATATTTTGGGATCTATTGGTAGAGAGGTGGCTGAGCAAATTCAAGAAATGCCAATTGGTGAGATAGATGGTCAGGATCGACTCATTTGGCCCCATGATAAGTCAAGGAATTATACTGTGCGATCGGGTTATATTTGGATTCATCACCATGAGGTATCCACATCTAAGCCTATTACAGCATCTAGTTCCTCATACCAAATTAATAAGGTTATCTGGCCACTGCTTTGGAAGATTAAAACTATCCCTAAGCGCACCCGTCCATCTCCGCCGTCTATTTTGAAAAAGTCAAAAGTCAGCGTCAAATGGACGGCGGAGATGGACGGGTGCGCGACTACTTATCCGATCATAGAGAGGATTCGGAATCTGGGCAGATGCTTTCTTGACTGTCGATGGCGATGGATCCCACGTAACGCGAACAACGCAGCACACACGGCTGCTTCGCTGGCCACTGAGGCGGTGGACCTTCTCCGGTGGGCGACTCAGCCACCACTGCCTCTTCTTGCCACTTTGATTTCGGATGGACTGACAGCAACAGGGATCGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

627

Amino Acids

71.61

Weight (kDa)

8.79

Isoelectric Point (pI)

40.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1157, 1171
AccII CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
AciI CCGC 5 cut(s) 487, 572, 1601, 1646, 1790
AclWI GGATC 8 cut(s) 77, 141, 758, 1354, 1419, 1729, 1742, 1880
AcoI YGGCCR 2 cut(s) 1550, 1779
AcsI RAATTY 5 cut(s) 69, 833, 912, 1327, 1374
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 2 cut(s) 302, 1073
AfiI CCNNNNNNNGG 3 cut(s) 129, 873, 1047
AgsI TTSAA 7 cut(s) 118, 190, 323, 637, 991, 1379, 1615
AjnI CCWGG 2 cut(s) 267, 766
AjuI GAANNNNNNNTTGG 6 cut(s) 110, 142, 197, 229, 1374, 1406
AluBI AGCT 5 cut(s) 458, 516, 665, 797, 1300
AluI AGCT 5 cut(s) 458, 516, 665, 797, 1300
Alw21I GWGCWC 1 cut(s) 1102
Alw26I GTCTC 2 cut(s) 770, 1071
Alw44I GTGCAC 1 cut(s) 1098
AlwI GGATC 8 cut(s) 77, 141, 758, 1354, 1419, 1729, 1742, 1880
AoxI GGCC 7 cut(s) 192, 355, 544, 1146, 1424, 1550, 1779
ApaI GGGCCC 1 cut(s) 548
ApaLI GTGCAC 1 cut(s) 1098
ApeKI GCWGC 3 cut(s) 458, 1757, 1769
ApoI RAATTY 5 cut(s) 69, 833, 912, 1327, 1374
AseI ATTAAT 2 cut(s) 414, 1536
AspLEI GCGC 2 cut(s) 1587, 1664
AspS9I GGNCC 6 cut(s) 356, 544, 545, 1194, 1425, 1795
AsuC2I CCSGG 2 cut(s) 196, 1079
AsuHPI GGTGA 3 cut(s) 287, 1406, 1472
AvaII GGWCC 2 cut(s) 1194, 1795
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 2 cut(s) 548, 1102
BalI TGGCCA 2 cut(s) 1552, 1781
BamHI GGATCC 1 cut(s) 1734
BanII GRGCYC 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 1102
BbvI GCAGC 3 cut(s) 445, 1756, 1769
BceAI ACGGC 3 cut(s) 1588, 1659, 1782
BciT130I CCWGG 2 cut(s) 269, 768
BciVI GTATCC 1 cut(s) 1501
BcnI CCSGG 2 cut(s) 196, 1079
BcoDI GTCTC 2 cut(s) 770, 1071
BfaI CTAG 7 cut(s) 233, 294, 900, 1134, 1163, 1242, 1518
BfuAI ACCTGC 2 cut(s) 1157, 1171
BfuI GTATCC 1 cut(s) 1501
BglI GCCNNNNNGGC 1 cut(s) 1787
BisI GCNGC 3 cut(s) 459, 1758, 1770
BlpI GCTNAGC 1 cut(s) 1368
BlsI GCNGC 3 cut(s) 460, 1759, 1771
Bme1390I CCNGG 4 cut(s) 196, 269, 768, 1079
Bme18I GGWCC 2 cut(s) 1194, 1795
BmgT120I GGNCC 6 cut(s) 356, 544, 545, 1194, 1425, 1795
BmiI GGNNCC 6 cut(s) 432, 545, 546, 1195, 1427, 1736
BmrFI CCNGG 4 cut(s) 196, 269, 768, 1079
BmsI GCATC 5 cut(s) 172, 273, 568, 1523, 1697
BpiI GAAGAC 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 464, 496
Bpu10I CCTNAGC 1 cut(s) 1581
Bpu1102I GCTNAGC 1 cut(s) 1368
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 196, 1079
BsaAI YACGTR 1 cut(s) 1742
BsaJI CCNNGG 4 cut(s) 195, 359, 405, 604
BsaWI WCCGGW 3 cut(s) 252, 433, 1803
Bsc4I CCNNNNNNNGG 3 cut(s) 129, 873, 1047
Bse1I ACTGG 1 cut(s) 684
Bse21I CCTNAGG 1 cut(s) 948
BseBI CCWGG 2 cut(s) 269, 768
BseDI CCNNGG 4 cut(s) 195, 359, 405, 604
BseGI GGATG 7 cut(s) 264, 277, 358, 514, 580, 897, 1858
BseLI CCNNNNNNNGG 3 cut(s) 129, 873, 1047
BseMII CTCAG 3 cut(s) 1359, 1776, 1829
BseNI ACTGG 1 cut(s) 684
BseRI GAGGAG 1 cut(s) 422
BseSI GKGCMC 2 cut(s) 548, 1102
BseXI GCAGC 3 cut(s) 445, 1756, 1769
Bsh1236I CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
Bsh1285I CGRYCG 1 cut(s) 1460
BshFI GGCC 7 cut(s) 194, 357, 546, 1148, 1426, 1552, 1781
BsiEI CGRYCG 1 cut(s) 1460
BsiHKAI GWGCWC 1 cut(s) 1102
BsiSI CCGG 5 cut(s) 195, 253, 434, 1079, 1804
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 3 cut(s) 129, 873, 1047
BsmAI GTCTC 2 cut(s) 770, 1071
BsmFI GGGAC 1 cut(s) 541
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 7 cut(s) 194, 357, 546, 1148, 1426, 1552, 1781
Bsp120I GGGCCC 1 cut(s) 544
Bsp1286I GDGCHC 2 cut(s) 548, 1102
Bsp1720I GCTNAGC 1 cut(s) 1368
Bsp68I TCGCGA 2 cut(s) 175, 1270
BspACI CCGC 5 cut(s) 487, 572, 1601, 1646, 1790
BspANI GGCC 7 cut(s) 194, 357, 546, 1148, 1426, 1552, 1781
BspCNI CTCAG 3 cut(s) 1360, 1777, 1828
BspFNI CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
BspLI GGNNCC 6 cut(s) 432, 545, 546, 1195, 1427, 1736
BspMI ACCTGC 2 cut(s) 1157, 1171
BspPI GGATC 8 cut(s) 77, 141, 758, 1354, 1419, 1729, 1742, 1880
BsrI ACTGG 1 cut(s) 684
BssECI CCNNGG 4 cut(s) 195, 359, 405, 604
BssT1I CCWWGG 2 cut(s) 359, 604
Bst2UI CCWGG 2 cut(s) 269, 768
Bst4CI ACNGT 5 cut(s) 12, 281, 1264, 1453, 1721
Bst6I CTCTTC 4 cut(s) 233, 438, 569, 1836
BstBAI YACGTR 1 cut(s) 1742
BstC8I GCNNGC 3 cut(s) 826, 1178, 1779
BstDEI CTNAG 8 cut(s) 495, 938, 948, 1368, 1500, 1581, 1785, 1815
BstEII GGTNACC 1 cut(s) 1224
BstF5I GGATG 7 cut(s) 264, 277, 358, 514, 580, 897, 1858
BstFNI CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
BstHHI GCGC 2 cut(s) 1587, 1664
BstMAI GTCTC 2 cut(s) 770, 1071
BstMCI CGRYCG 1 cut(s) 1460
BstMWI GCNNNNNNNGC 8 cut(s) 578, 809, 1004, 1754, 1766, 1778, 1787, 1825
BstNI CCWGG 2 cut(s) 269, 768
BstNSI RCATGY 1 cut(s) 828
BstPI GGTNACC 1 cut(s) 1224
BstSCI CCNGG 4 cut(s) 194, 267, 766, 1077
BstSLI GKGCMC 2 cut(s) 548, 1102
BstUI CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
BstV1I GCAGC 3 cut(s) 445, 1756, 1769
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 3 cut(s) 133, 1346, 1734
BstXI CCANNNNNNTGG 2 cut(s) 366, 1560
BstYI RGATCY 3 cut(s) 133, 1346, 1734
Bsu36I CCTNAGG 1 cut(s) 948
BsuI GTATCC 1 cut(s) 1501
BsuRI GGCC 7 cut(s) 194, 357, 546, 1148, 1426, 1552, 1781
BtgZI GCGATG 2 cut(s) 392, 1744
BtsCI GGATG 7 cut(s) 264, 277, 358, 514, 580, 897, 1858
BtsI GCAGTG 2 cut(s) 1553, 1823
BtsIMutI CAGTG 6 cut(s) 8, 80, 1100, 1553, 1782, 1823
BtuMI TCGCGA 2 cut(s) 175, 1270
BveI ACCTGC 2 cut(s) 1157, 1171
Cac8I GCNNGC 3 cut(s) 826, 1178, 1779
CfoI GCGC 2 cut(s) 1587, 1664
Cfr13I GGNCC 6 cut(s) 356, 544, 545, 1194, 1425, 1795
CseI GACGC 2 cut(s) 608, 1621
Csp6I GTAC 2 cut(s) 301, 1072
CviAII CATG 7 cut(s) 470, 553, 825, 1122, 1283, 1430, 1484
CviQI GTAC 2 cut(s) 301, 1072
DdeI CTNAG 8 cut(s) 495, 938, 948, 1368, 1500, 1581, 1785, 1815
DraI TTTAAA 1 cut(s) 832
EaeI YGGCCR 2 cut(s) 1550, 1779
Eam1104I CTCTTC 4 cut(s) 233, 438, 569, 1836
EarI CTCTTC 4 cut(s) 233, 438, 569, 1836
EciI GGCGGA 2 cut(s) 1590, 1661
Eco130I CCWWGG 2 cut(s) 359, 604
Eco24I GRGCYC 1 cut(s) 548
Eco47I GGWCC 2 cut(s) 1194, 1795
Eco57I CTGAAG 1 cut(s) 965
Eco81I CCTNAGG 1 cut(s) 948
Eco91I GGTNACC 1 cut(s) 1224
EcoO109I RGGNCCY 3 cut(s) 544, 545, 1194
EcoO65I GGTNACC 1 cut(s) 1224
EcoRII CCWGG 2 cut(s) 267, 766
EcoT14I CCWWGG 2 cut(s) 359, 604
EcoT38I GRGCYC 1 cut(s) 548
ErhI CCWWGG 2 cut(s) 359, 604
FaeI CATG 7 cut(s) 473, 556, 828, 1125, 1286, 1433, 1487
FaqI GGGAC 1 cut(s) 541
FatI CATG 7 cut(s) 469, 552, 824, 1121, 1282, 1429, 1483
Fnu4HI GCNGC 3 cut(s) 459, 1758, 1770
FokI GGATG 7 cut(s) 251, 284, 365, 521, 587, 904, 1865
FriOI GRGCYC 1 cut(s) 548
Fsp4HI GCNGC 3 cut(s) 459, 1758, 1770
FspBI CTAG 7 cut(s) 233, 294, 900, 1134, 1163, 1242, 1518
GlaI GCGC 2 cut(s) 1586, 1663
GluI GCNGC 3 cut(s) 459, 1758, 1770
HaeIII GGCC 7 cut(s) 194, 357, 546, 1148, 1426, 1552, 1781
HapII CCGG 5 cut(s) 195, 253, 434, 1079, 1804
HgaI GACGC 2 cut(s) 608, 1621
HhaI GCGC 2 cut(s) 1587, 1664
Hin1II CATG 7 cut(s) 473, 556, 828, 1125, 1286, 1433, 1487
Hin6I GCGC 2 cut(s) 1585, 1662
HinP1I GCGC 2 cut(s) 1585, 1662
HincII GTYRAC 1 cut(s) 944
HindII GTYRAC 1 cut(s) 944
HpaII CCGG 5 cut(s) 195, 253, 434, 1079, 1804
HphI GGTGA 3 cut(s) 287, 1406, 1472
Hpy166II GTNNAC 3 cut(s) 944, 1100, 1795
Hpy188III TCNNGA 9 cut(s) 19, 174, 294, 419, 674, 1269, 1379, 1409, 1715
Hpy8I GTNNAC 3 cut(s) 944, 1100, 1795
HpyAV CCTTC 4 cut(s) 184, 1245, 1263, 1808
HpyCH4III ACNGT 5 cut(s) 12, 281, 1264, 1453, 1721
HpyCH4IV ACGT 1 cut(s) 1741
HpyCH4V TGCA 3 cut(s) 55, 1086, 1100
HpyF10VI GCNNNNNNNGC 8 cut(s) 578, 809, 1004, 1754, 1766, 1778, 1787, 1825
HpyF3I CTNAG 8 cut(s) 495, 938, 948, 1368, 1500, 1581, 1785, 1815
HpySE526I ACGT 1 cut(s) 1741
Hsp92II CATG 7 cut(s) 473, 556, 828, 1125, 1286, 1433, 1487
HspAI GCGC 2 cut(s) 1585, 1662
LmnI GCTCC 2 cut(s) 142, 436
Lsp1109I GCAGC 3 cut(s) 445, 1756, 1769
LweI GCATC 5 cut(s) 172, 273, 568, 1523, 1697
MaeI CTAG 7 cut(s) 233, 294, 900, 1134, 1163, 1242, 1518
MaeII ACGT 1 cut(s) 1741
MaeIII GTNAC 4 cut(s) 6, 275, 1224, 1742
MfeI CAATTG 1 cut(s) 1389
MflI RGATCY 3 cut(s) 133, 1346, 1734
MhlI GDGCHC 2 cut(s) 548, 1102
MlsI TGGCCA 2 cut(s) 1552, 1781
MluNI TGGCCA 2 cut(s) 1552, 1781
MlyI GAGTC 4 cut(s) 772, 889, 1410, 1807
MmeI TCCRAC 1 cut(s) 420
Mox20I TGGCCA 2 cut(s) 1552, 1781
MscI TGGCCA 2 cut(s) 1552, 1781
MseI TTAA 8 cut(s) 414, 786, 831, 1061, 1188, 1293, 1536, 1569
MslI CAYNNNNRTG 1 cut(s) 1482
Msp20I TGGCCA 2 cut(s) 1552, 1781
MspI CCGG 5 cut(s) 195, 253, 434, 1079, 1804
MspR9I CCNGG 4 cut(s) 196, 269, 768, 1079
MunI CAATTG 1 cut(s) 1389
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 2 cut(s) 269, 768
MvnI CGCG 6 cut(s) 175, 377, 619, 1270, 1664, 1748
MwoI GCNNNNNNNGC 8 cut(s) 578, 809, 1004, 1754, 1766, 1778, 1787, 1825
NciI CCSGG 2 cut(s) 196, 1079
NlaIII CATG 7 cut(s) 473, 556, 828, 1125, 1286, 1433, 1487
NlaIV GGNNCC 6 cut(s) 432, 545, 546, 1195, 1427, 1736
NmuCI GTSAC 2 cut(s) 6, 275
NruI TCGCGA 2 cut(s) 175, 1270
NspI RCATGY 1 cut(s) 828
PaeI GCATGC 1 cut(s) 828
PctI GAATGC 1 cut(s) 124
PfeI GAWTC 9 cut(s) 200, 213, 256, 526, 863, 976, 1474, 1690, 1696
PfoI TCCNGGA 3 cut(s) 267, 766, 1077
PkrI GCNGC 3 cut(s) 460, 1759, 1771
Ple19I CGATCG 1 cut(s) 1460
PleI GAGTC 4 cut(s) 772, 889, 1410, 1807
PpsI GAGTC 4 cut(s) 772, 889, 1410, 1807
Ppu21I YACGTR 1 cut(s) 1742
PpuMI RGGWCCY 1 cut(s) 1194
PshBI ATTAAT 2 cut(s) 414, 1536
Psp5II RGGWCCY 1 cut(s) 1194
Psp6I CCWGG 2 cut(s) 267, 766
PspEI GGTNACC 1 cut(s) 1224
PspGI CCWGG 2 cut(s) 267, 766
PspN4I GGNNCC 6 cut(s) 432, 545, 546, 1195, 1427, 1736
PspOMI GGGCCC 1 cut(s) 544
PspPI GGNCC 6 cut(s) 356, 544, 545, 1194, 1425, 1795
PspPPI RGGWCCY 1 cut(s) 1194
PsuI RGATCY 3 cut(s) 133, 1346, 1734
PvuI CGATCG 1 cut(s) 1460
RruI TCGCGA 2 cut(s) 175, 1270
RsaI GTAC 2 cut(s) 302, 1073
RsaNI GTAC 2 cut(s) 301, 1072
RseI CAYNNNNRTG 1 cut(s) 1482
SaqAI TTAA 8 cut(s) 414, 786, 831, 1061, 1188, 1293, 1536, 1569
SatI GCNGC 3 cut(s) 459, 1758, 1770
Sau96I GGNCC 6 cut(s) 356, 544, 545, 1194, 1425, 1795
SchI GAGTC 4 cut(s) 772, 889, 1410, 1807
ScrFI CCNGG 4 cut(s) 196, 269, 768, 1079
SduI GDGCHC 2 cut(s) 548, 1102
SfaNI GCATC 5 cut(s) 172, 273, 568, 1523, 1697
SinI GGWCC 2 cut(s) 1194, 1795
SmiMI CAYNNNNRTG 1 cut(s) 1482
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SphI GCATGC 1 cut(s) 828
SsiI CCGC 5 cut(s) 487, 572, 1601, 1646, 1790
SspI AATATT 1 cut(s) 158
SspMI CTAG 7 cut(s) 233, 294, 900, 1134, 1163, 1242, 1518
StyD4I CCNGG 4 cut(s) 194, 267, 766, 1077
StyI CCWWGG 2 cut(s) 359, 604
TaaI ACNGT 5 cut(s) 12, 281, 1264, 1453, 1721
TaiI ACGT 1 cut(s) 1744
TaqI TCGA 4 cut(s) 247, 750, 1414, 1723
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 9 cut(s) 200, 213, 256, 526, 863, 976, 1474, 1690, 1696
Tru1I TTAA 8 cut(s) 414, 786, 831, 1061, 1188, 1293, 1536, 1569
Tru9I TTAA 8 cut(s) 414, 786, 831, 1061, 1188, 1293, 1536, 1569
TscAI CASTG 6 cut(s) 15, 80, 1107, 1560, 1789, 1830
TseFI GTSAC 2 cut(s) 6, 275
TseI GCWGC 3 cut(s) 458, 1757, 1769
Tsp45I GTSAC 2 cut(s) 6, 275
TspDTI ATGAA 4 cut(s) 126, 905, 1110, 1466
TspRI CASTG 6 cut(s) 15, 80, 1107, 1560, 1789, 1830
VneI GTGCAC 1 cut(s) 1098
VpaK11BI GGWCC 2 cut(s) 1194, 1795
VspI ATTAAT 2 cut(s) 414, 1536
XapI RAATTY 5 cut(s) 69, 833, 912, 1327, 1374
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 1 cut(s) 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 1789
XspI CTAG 7 cut(s) 233, 294, 900, 1134, 1163, 1242, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.