Rmu_sc0005217.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005217.1
OG0000194
Physical Location & Seq
Forward (+)
24706 .. 26961
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005217.1_g000006.1.cds

Sequence Viewer

Length: 864 bp
atgccatttaagcatagaggagatattgctagggcactgatgtacatggcggtatgttatggatattgtcaaacagatggaggcccagttcttcacctttcagattctccaaaaatttgggcacgttggcaagtgagagatgggaatgatatcctgattgatgacccatggctacctagagctgctccatttcggttattacctattcagggaggcaaagatgcgggttggaaggtcagtaatctgatgaataatgagggcagctggaatgaaactttagtccggcaagtttgtcatgttgatgatatccccttcattttgtctattcctttgagtaatcgaagggttaaagatcgttgggtgtggcattttgactccaaagggattttttcagttaagagtgcttatagactattgatggaggaggagatggtgcaagagactcctttgcacacacaagatctatggaagaaactatggtctaccaaggtcccagcctttgtttataatttgtggggtatttggaaggagagaaataatagggtgtgggataataagaatatggaggtgaaccagggtaaggaccagggtggagggagccggcgagtagttccttggaaacctcccagtgcagggtgggtgaagattaatgttgatggtgctttctacaaagatacctatactggggaacaggttgaggctttagcagggagggaggcagtctcacttgctattcagcgaggtctctctccagctacctttgagaccgattctcttactctttttcatgctactaagcagagaatcattccccatacttcctttattggtcgtgtgtatgatgacattacctttcatctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

287

Amino Acids

33.03

Weight (kDa)

8.87

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
AccI GTMKAC 1 cut(s) 482
AciI CCGC 2 cut(s) 50, 224
AcsI RAATTY 1 cut(s) 114
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 5 cut(s) 209, 580, 632, 633, 684
AjnI CCWGG 2 cut(s) 573, 585
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 182, 264, 755
AluI AGCT 3 cut(s) 182, 264, 755
Alw26I GTCTC 4 cut(s) 434, 727, 749, 758
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 2 cut(s) 182, 261
ApoI RAATTY 1 cut(s) 114
AseI ATTAAT 1 cut(s) 648
AspS9I GGNCC 3 cut(s) 83, 490, 583
AsuHPI GGTGA 3 cut(s) 86, 580, 652
AvaII GGWCC 2 cut(s) 490, 583
BaeGI GKGCMC 2 cut(s) 37, 124
BbvI GCAGC 2 cut(s) 169, 273
BccI CCATC 5 cut(s) 71, 134, 412, 424, 650
BciT130I CCWGG 2 cut(s) 575, 587
BcoDI GTCTC 4 cut(s) 434, 727, 749, 758
BfaI CTAG 2 cut(s) 30, 177
BglII AGATCT 1 cut(s) 460
BisI GCNGC 2 cut(s) 183, 262
BlsI GCNGC 2 cut(s) 184, 263
Bme1390I CCNGG 2 cut(s) 575, 587
Bme18I GGWCC 2 cut(s) 490, 583
BmgT120I GGNCC 3 cut(s) 83, 490, 583
BmiI GGNNCC 2 cut(s) 492, 599
BmrFI CCNGG 2 cut(s) 575, 587
BmrI ACTGGG 3 cut(s) 80, 621, 693
BmsI GCATC 1 cut(s) 211
BmuI ACTGGG 3 cut(s) 80, 621, 693
BplI GAGNNNNNCTC 2 cut(s) 707, 739
BpmI CTGGAG 1 cut(s) 735
BsaI GGTCTC 2 cut(s) 749, 758
BsaJI CCNNGG 5 cut(s) 167, 486, 574, 586, 614
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 5 cut(s) 209, 580, 632, 633, 684
Bse118I RCCGGY 1 cut(s) 600
Bse1I ACTGG 3 cut(s) 86, 627, 688
BseBI CCWGG 2 cut(s) 575, 587
BseDI CCNNGG 5 cut(s) 167, 486, 574, 586, 614
BseLI CCNNNNNNNGG 5 cut(s) 209, 580, 632, 633, 684
BseNI ACTGG 3 cut(s) 86, 627, 688
BseRI GAGGAG 3 cut(s) 33, 437, 440
BseSI GKGCMC 2 cut(s) 37, 124
BseXI GCAGC 2 cut(s) 169, 273
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 1 cut(s) 651
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 283, 601
BslFI GGGAC 1 cut(s) 476
BslI CCNNNNNNNGG 5 cut(s) 209, 580, 632, 633, 684
BsmAI GTCTC 4 cut(s) 434, 727, 749, 758
BsmFI GGGAC 1 cut(s) 476
BsnI GGCC 1 cut(s) 84
Bso31I GGTCTC 2 cut(s) 749, 758
Bsp1286I GDGCHC 2 cut(s) 37, 124
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 352, 460
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 2 cut(s) 50, 224
BspANI GGCC 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 492, 599
BspTNI GGTCTC 2 cut(s) 749, 758
BsrFI RCCGGY 1 cut(s) 600
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 3 cut(s) 86, 627, 688
BssAI RCCGGY 1 cut(s) 600
BssECI CCNNGG 5 cut(s) 167, 486, 574, 586, 614
BssMI GATC 2 cut(s) 352, 460
BssT1I CCWWGG 3 cut(s) 167, 486, 614
Bst2UI CCWGG 2 cut(s) 575, 587
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 1 cut(s) 602
BstDEI CTNAG 1 cut(s) 795
BstDSI CCRYGG 1 cut(s) 167
BstKTI GATC 2 cut(s) 355, 463
BstMAI GTCTC 4 cut(s) 434, 727, 749, 758
BstMBI GATC 2 cut(s) 352, 460
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 2 cut(s) 575, 587
BstSCI CCNGG 2 cut(s) 573, 585
BstSLI GKGCMC 2 cut(s) 37, 124
BstV1I GCAGC 2 cut(s) 169, 273
BstX2I RGATCY 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 117
BstYI RGATCY 1 cut(s) 460
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 167
BtsIMutI CAGTG 2 cut(s) 35, 634
Cac8I GCNNGC 1 cut(s) 602
Cfr10I RCCGGY 1 cut(s) 600
Cfr13I GGNCC 3 cut(s) 83, 490, 583
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 46, 168, 296, 788
CviJI RGCY 8 cut(s) 84, 172, 182, 264, 497, 600, 701, 755
CviKI_1 RGCY 8 cut(s) 84, 172, 182, 264, 497, 600, 701, 755
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 795
DpnI GATC 2 cut(s) 354, 462
DpnII GATC 2 cut(s) 352, 460
Eco130I CCWWGG 3 cut(s) 167, 486, 614
Eco31I GGTCTC 2 cut(s) 749, 758
Eco32I GATATC 2 cut(s) 151, 307
Eco47I GGWCC 2 cut(s) 490, 583
EcoO109I RGGNCCY 1 cut(s) 490
EcoRII CCWGG 2 cut(s) 573, 585
EcoRV GATATC 2 cut(s) 151, 307
EcoT14I CCWWGG 3 cut(s) 167, 486, 614
ErhI CCWWGG 3 cut(s) 167, 486, 614
FaeI CATG 4 cut(s) 49, 171, 299, 791
FaqI GGGAC 1 cut(s) 476
FatI CATG 4 cut(s) 45, 167, 295, 787
FauI CCCGC 1 cut(s) 217
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 2 cut(s) 183, 262
Fsp4HI GCNGC 2 cut(s) 183, 262
FspBI CTAG 2 cut(s) 30, 177
GluI GCNGC 2 cut(s) 183, 262
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 735
HaeIII GGCC 1 cut(s) 84
HapII CCGG 2 cut(s) 283, 601
Hin1II CATG 4 cut(s) 49, 171, 299, 791
HinfI GANTC 5 cut(s) 104, 374, 442, 770, 804
HpaII CCGG 2 cut(s) 283, 601
HphI GGTGA 3 cut(s) 86, 580, 652
Hpy166II GTNNAC 2 cut(s) 483, 571
Hpy188I TCNGA 2 cut(s) 103, 246
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 483, 571
HpyAV CCTTC 4 cut(s) 226, 322, 336, 520
HpyCH4IV ACGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 436, 451, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 1 cut(s) 795
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 4 cut(s) 49, 171, 299, 791
KroI GCCGGC 1 cut(s) 600
KroNI GCCGGC 1 cut(s) 602
Kzo9I GATC 2 cut(s) 352, 460
LmnI GCTCC 2 cut(s) 190, 597
Lsp1109I GCAGC 2 cut(s) 169, 273
LweI GCATC 1 cut(s) 211
MaeI CTAG 2 cut(s) 30, 177
MaeII ACGT 1 cut(s) 124
MalI GATC 2 cut(s) 354, 462
MboI GATC 2 cut(s) 352, 460
MboII GAAGA 3 cut(s) 83, 481, 655
MflI RGATCY 1 cut(s) 460
MhlI GDGCHC 2 cut(s) 37, 124
MluCI AATT 2 cut(s) 114, 508
MlyI GAGTC 2 cut(s) 368, 436
MmeI TCCRAC 1 cut(s) 209
MroNI GCCGGC 1 cut(s) 600
MseI TTAA 4 cut(s) 9, 348, 396, 648
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 2 cut(s) 283, 601
MspR9I CCNGG 2 cut(s) 575, 587
MvaI CCWGG 2 cut(s) 575, 587
MwoI GCNNNNNNNGC 1 cut(s) 10
NaeI GCCGGC 1 cut(s) 602
NcoI CCATGG 1 cut(s) 167
NdeII GATC 2 cut(s) 352, 460
NgoMIV GCCGGC 1 cut(s) 600
NlaIII CATG 4 cut(s) 49, 171, 299, 791
NlaIV GGNNCC 2 cut(s) 492, 599
PdiI GCCGGC 1 cut(s) 602
PfeI GAWTC 3 cut(s) 104, 770, 804
PkrI GCNGC 2 cut(s) 184, 263
PleI GAGTC 2 cut(s) 368, 436
PpsI GAGTC 2 cut(s) 368, 436
PpuMI RGGWCCY 1 cut(s) 490
PshBI ATTAAT 1 cut(s) 648
PsiI TTATAA 1 cut(s) 507
Psp5II RGGWCCY 1 cut(s) 490
Psp6I CCWGG 2 cut(s) 573, 585
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 2 cut(s) 573, 585
PspN4I GGNNCC 2 cut(s) 492, 599
PspPI GGNCC 3 cut(s) 83, 490, 583
PspPPI RGGWCCY 1 cut(s) 490
PsuI RGATCY 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 264
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 300
SaqAI TTAA 4 cut(s) 9, 348, 396, 648
SatI GCNGC 2 cut(s) 183, 262
Sau3AI GATC 2 cut(s) 352, 460
Sau96I GGNCC 3 cut(s) 83, 490, 583
SchI GAGTC 2 cut(s) 368, 436
ScrFI CCNGG 2 cut(s) 575, 587
SduI GDGCHC 2 cut(s) 37, 124
SfaNI GCATC 1 cut(s) 211
SinI GGWCC 2 cut(s) 490, 583
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 114, 508
SsiI CCGC 2 cut(s) 50, 224
SspMI CTAG 2 cut(s) 30, 177
StyD4I CCNGG 2 cut(s) 573, 585
StyI CCWWGG 3 cut(s) 167, 486, 614
TaiI ACGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 340
TaqII GACCGA 1 cut(s) 782
TasI AATT 2 cut(s) 114, 508
TatI WGTACW 1 cut(s) 42
TfiI GAWTC 3 cut(s) 104, 770, 804
Tru1I TTAA 4 cut(s) 9, 348, 396, 648
Tru9I TTAA 4 cut(s) 9, 348, 396, 648
TscAI CASTG 2 cut(s) 42, 634
TseI GCWGC 2 cut(s) 182, 261
TspDTI ATGAA 5 cut(s) 263, 285, 304, 776, 845
TspRI CASTG 2 cut(s) 42, 634
VpaK11BI GGWCC 2 cut(s) 490, 583
VspI ATTAAT 1 cut(s) 648
XapI RAATTY 1 cut(s) 114
XmiI GTMKAC 1 cut(s) 482
XspI CTAG 2 cut(s) 30, 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.