Rmu_ssc0000395.1_g000031

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000395.1
OG0000194
Physical Location & Seq
Forward (+)
130418 .. 131344
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000395.1_g000031.1.cds

Sequence Viewer

Length: 927 bp
atggttggaaatcagagtggctgtctcaagcagggaaaagaagtgcttatcaaagcagtagctactgcaatccctgcttacccaatgtcttgtttccgaatgcctgttactctttgcagggctataaactcggatattgcaaagttctgttggggtcataatgagaactctgataaaattcactggcaagcatggaataagttgtgcaaatcaaaggatgagggaggtatgaactttagagaccttgaaacgttcaaacttgctttgttagcaaaacagtgctggagaattcaaaataatcctcaagctctctgggttcgcatccttaaagctctttattttcattattgttccttctttcaagcagaagtgggttcaagatcctcttgggcttggagcagtatattggccggaagagatacaattgtgaatggtgctcgttggcaagttaataatggcagatccatccaagtttgggaggatagatggattcccaatattccagatggtcgtttgcatccttttccaactagtaacagattcactgcactttcggtcaatgaagttattgatgaggacacaaactcttggaagatagatcatattgaaccattcattcttgccattgaagcatcctccattaaggccatccgtattggtgatccagctgttgatgatagattaatttggccccatgagaaatctggtcaatttactatgaaatcatgctatcatcatttatatagcccctctattcctcctcctaaagcctcctcccatcgagtggacaagaaagtttggaagattatttggagcattaacactctaccgaaaattaaacagtacttcttgtggagggctgtctccaattctttgtccaccaattacaatattttcaagagaaaattgatcaaatctccattatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

308

Amino Acids

35.47

Weight (kDa)

9.58

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000194)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34320 AT4G29090 AT5G42965
fragaria_vesca FvH4_1g19471 FvH4_1g29471 FvH4_1g29601 FvH4_2g04611 FvH4_2g05763 FvH4_2g11451 FvH4_2g11841 FvH4_3g10391 FvH4_3g21491 FvH4_3g21492 FvH4_3g32111 FvH4_3g35051 FvH4_4g06793 FvH4_5g08844 FvH4_5g15942 FvH4_5g18751 FvH4_5g27367 FvH4_6g11612 FvH4_6g20242 FvH4_6g27671 FvH4_6g31921 FvH4_7g32463
malus_domestica MD06G1107000.v1.1 MD07G1135800.v1.1 MD08G1205700.v1.1
prunus_persica Prupe.1G202000_v2.0.a1 Prupe.2G049100_v2.0.a1 Prupe.2G060500_v2.0.a1 Prupe.3G120300_v2.0.a1 Prupe.3G135000_v2.0.a1 Prupe.6G087800_v2.0.a1 Prupe.6G158500_v2.0.a1 Prupe.6G353900_v2.0.a1 Prupe.7G008600_v2.0.a1 Prupe.8G090500_v2.0.a1
pyrus_communis pycom01g21690 pycom02g19910 pycom04g18080 pycom07g08600 pycom07g18710 pycom07g26560 pycom08g03130 pycom08g13950 pycom09g06380 pycom10g13390 pycom10g22280 pycom11g04440 pycom11g10940 pycom12g04710 pycom13g08790 pycom15g31740 pycom17g14740 pycom17g24980
rosa_chinensis RchiOBHm_Chr1g0327801 RchiOBHm_Chr1g0347181 RchiOBHm_Chr1g0348821 RchiOBHm_Chr2g0157831 RchiOBHm_Chr5g0040851 RchiOBHm_Chr6g0249781 RchiOBHm_Chr7g0208461 RchiOBHm_Chr7g0210911 RchiOBHm_Chr7g0219141
rosa_laevigata RLG00000034326
rosa_multiflora Rmu_co8140276.1_g000001 Rmu_co8282095.1_g000001 Rmu_co8303311.1_g000001 Rmu_co8314215.1_g000001 Rmu_co8345435.1_g000001 Rmu_co8461745.1_g000001 Rmu_sc0000315.1_g000040 Rmu_sc0000487.1_g000014 Rmu_sc0000690.1_g000002 Rmu_sc0000808.1_g000001 Rmu_sc0000938.1_g000009 Rmu_sc0001260.1_g000002 Rmu_sc0001534.1_g000008 Rmu_sc0001669.1_g000003 Rmu_sc0001685.1_g000050 Rmu_sc0001838.1_g000007 Rmu_sc0002193.1_g000025 Rmu_sc0002308.1_g000058 Rmu_sc0002322.1_g000018 Rmu_sc0002529.1_g000008 Rmu_sc0002531.1_g000043 Rmu_sc0002754.1_g000022 Rmu_sc0002902.1_g000055 Rmu_sc0003627.1_g000005 Rmu_sc0003743.1_g000003 Rmu_sc0003765.1_g000016 Rmu_sc0003941.1_g000020 Rmu_sc0004038.1_g000011 Rmu_sc0004329.1_g000010 Rmu_sc0004476.1_g000002 Rmu_sc0004904.1_g000022 Rmu_sc0004988.1_g000017 Rmu_sc0005217.1_g000006 Rmu_sc0005257.1_g000010 Rmu_sc0005285.1_g000008 Rmu_sc0005687.1_g000001 Rmu_sc0006380.1_g000020 Rmu_sc0006922.1_g000004 Rmu_sc0007398.1_g000007 Rmu_sc0008279.1_g000019 Rmu_sc0009139.1_g000004 Rmu_sc0009158.1_g000001 Rmu_sc0010099.1_g000002 Rmu_sc0019043.1_g000001 Rmu_sc0022037.1_g000001 Rmu_sc0023291.1_g000001 Rmu_sc0031928.1_g000001 Rmu_sc0034436.1_g000002 Rmu_ssc0000126.1_g000001 Rmu_ssc0000151.1_g000016 Rmu_ssc0000152.1_g000009 Rmu_ssc0000395.1_g000031
rosa_roxburghii Rroxscaffold_1G00056570 Rroxscaffold_1G00058460 Rroxscaffold_2G00106120 Rroxscaffold_2G00106260 Rroxscaffold_6G00399080
rosa_rugosa Rorug02G0173300 Rorug02G0225600 Rorug03G0083300 Rorug03G0104900 Rorug04G0256500 Rorug05G0342600 Rorug06G0006200 Rorug06G0095200 Rorug06G0095600 Rorug06G0111500 Rorug07G0001200 Rorug07G0183100 Rorug07G0183100 Rorug07G0209000
rosa_samantha Rh2DG065400 Rh3DG315900 Rh4AG106100 Rh4BG362100 Rh4CG030200 Rh4DG239000 Rh4DG294000 Rh6DG304800 Rh7DG149500
rosa_wichuraiana Rw1G018070 Rw1G021220 Rw1G021820 Rw1G026430 Rw2G050800 Rw3G023330 Rw6G010050 Rw6G010440 Rw7G031930 Rw7G033860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 784
AclI AACGTT 1 cut(s) 251
AclWI GGATC 3 cut(s) 375, 456, 656
AcoI YGGCCR 1 cut(s) 408
AcsI RAATTY 2 cut(s) 177, 288
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 2 cut(s) 475, 784
AgsI TTSAA 8 cut(s) 248, 256, 293, 362, 378, 608, 629, 898
AhlI ACTAGT 1 cut(s) 530
AluBI AGCT 4 cut(s) 62, 308, 332, 668
AluI AGCT 4 cut(s) 62, 308, 332, 668
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 3 cut(s) 29, 234, 868
AlwI GGATC 3 cut(s) 375, 456, 656
AoxI GGCC 3 cut(s) 408, 645, 689
ApoI RAATTY 2 cut(s) 177, 288
AseI ATTAAT 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 690
AsuHPI GGTGA 1 cut(s) 671
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
Bbv12I GWGCWC 1 cut(s) 439
BccI CCATC 5 cut(s) 473, 480, 500, 656, 786
BclI TGATCA 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 29, 234, 868
BcuI ACTAGT 1 cut(s) 530
BfaI CTAG 1 cut(s) 531
BmcAI AGTACT 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 690
BmiI GGNNCC 1 cut(s) 692
BmsI GCATC 3 cut(s) 330, 526, 641
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 2 cut(s) 11, 288
BsaI GGTCTC 1 cut(s) 234
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 784
Bse1I ACTGG 1 cut(s) 188
BseGI GGATG 6 cut(s) 223, 321, 465, 517, 632, 648
BseLI CCNNNNNNNGG 2 cut(s) 475, 784
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 2 cut(s) 750, 763
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 3 cut(s) 410, 647, 691
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 1 cut(s) 411
BslI CCNNNNNNNGG 2 cut(s) 475, 784
BsmAI GTCTC 3 cut(s) 29, 234, 868
BsmI GAATGC 1 cut(s) 105
BsnI GGCC 3 cut(s) 410, 647, 691
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 5 cut(s) 380, 461, 598, 661, 909
BspANI GGCC 3 cut(s) 410, 647, 691
BspLI GGNNCC 1 cut(s) 692
BspPI GGATC 3 cut(s) 375, 456, 656
BspTNI GGTCTC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 188
BssMI GATC 5 cut(s) 380, 461, 598, 661, 909
Bst4CI ACNGT 2 cut(s) 279, 843
Bst6I CTCTTC 1 cut(s) 409
BstAPI GCANNNNNTGC 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 189
BstF5I GGATG 6 cut(s) 223, 321, 465, 517, 632, 648
BstKTI GATC 5 cut(s) 383, 464, 601, 664, 912
BstMAI GTCTC 3 cut(s) 29, 234, 868
BstMBI GATC 5 cut(s) 380, 461, 598, 661, 909
BstMWI GCNNNNNNNGC 3 cut(s) 74, 269, 629
BstX2I RGATCY 2 cut(s) 380, 461
BstYI RGATCY 2 cut(s) 380, 461
BsuRI GGCC 3 cut(s) 410, 647, 691
BtsCI GGATG 6 cut(s) 223, 321, 465, 517, 632, 648
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 3 cut(s) 181, 284, 543
Cac8I GCNNGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 690
Csp6I GTAC 1 cut(s) 844
CviAII CATG 3 cut(s) 192, 695, 726
CviQI GTAC 1 cut(s) 844
DpnI GATC 5 cut(s) 382, 463, 600, 663, 911
DpnII GATC 5 cut(s) 380, 461, 598, 661, 909
EaeI YGGCCR 1 cut(s) 408
Eam1104I CTCTTC 1 cut(s) 409
EarI CTCTTC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 234
EcoRI GAATTC 1 cut(s) 288
FaeI CATG 3 cut(s) 195, 698, 729
FalI AAGNNNNNCTT 4 cut(s) 30, 62, 370, 402
FatI CATG 3 cut(s) 191, 694, 725
FbaI TGATCA 1 cut(s) 909
FokI GGATG 6 cut(s) 230, 308, 452, 504, 619, 635
FspBI CTAG 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 3 cut(s) 410, 647, 691
HapII CCGG 1 cut(s) 411
Hin1II CATG 3 cut(s) 195, 698, 729
HinfI GANTC 2 cut(s) 490, 540
HpaII CCGG 1 cut(s) 411
HphI GGTGA 1 cut(s) 671
Hpy166II GTNNAC 2 cut(s) 787, 879
Hpy188I TCNGA 4 cut(s) 15, 98, 133, 172
Hpy188III TCNNGA 3 cut(s) 378, 503, 898
Hpy8I GTNNAC 2 cut(s) 787, 879
HpyAV CCTTC 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 279, 843
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 6 cut(s) 68, 117, 140, 207, 517, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 269, 629
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 3 cut(s) 195, 698, 729
Ksp22I TGATCA 1 cut(s) 909
Kzo9I GATC 5 cut(s) 380, 461, 598, 661, 909
LmnI GCTCC 2 cut(s) 396, 813
LweI GCATC 3 cut(s) 330, 526, 641
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 106, 533
MalI GATC 5 cut(s) 382, 463, 600, 663, 911
MboI GATC 5 cut(s) 380, 461, 598, 661, 909
MboII GAAGA 3 cut(s) 426, 604, 814
MfeI CAATTG 1 cut(s) 423
MflI RGATCY 2 cut(s) 380, 461
MhlI GDGCHC 1 cut(s) 439
MluCI AATT 9 cut(s) 177, 288, 423, 684, 710, 834, 868, 883, 905
MmeI TCCRAC 1 cut(s) 551
MseI TTAA 6 cut(s) 327, 450, 642, 683, 819, 837
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 1 cut(s) 411
MunI CAATTG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 74, 269, 629
NdeII GATC 5 cut(s) 380, 461, 598, 661, 909
NlaIII CATG 3 cut(s) 195, 698, 729
NlaIV GGNNCC 1 cut(s) 692
PctI GAATGC 1 cut(s) 105
PfeI GAWTC 2 cut(s) 490, 540
PflMI CCANNNNNTGG 1 cut(s) 784
PshBI ATTAAT 1 cut(s) 683
Psp1406I AACGTT 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 692
PspPI GGNCC 1 cut(s) 690
PsuI RGATCY 2 cut(s) 380, 461
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
SaqAI TTAA 6 cut(s) 327, 450, 642, 683, 819, 837
Sau3AI GATC 5 cut(s) 380, 461, 598, 661, 909
Sau96I GGNCC 1 cut(s) 690
ScaI AGTACT 1 cut(s) 845
SduI GDGCHC 1 cut(s) 439
SetI ASST 7 cut(s) 64, 229, 246, 254, 310, 334, 670
SfaNI GCATC 3 cut(s) 330, 526, 641
SmlI CTYRAG 2 cut(s) 26, 303
SmoI CTYRAG 2 cut(s) 26, 303
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 9 cut(s) 177, 288, 423, 684, 710, 834, 868, 883, 905
SspI AATATT 2 cut(s) 499, 892
SspMI CTAG 1 cut(s) 531
TaaI ACNGT 2 cut(s) 279, 843
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 781
TaqII GACCGA 1 cut(s) 544
TasI AATT 9 cut(s) 177, 288, 423, 684, 710, 834, 868, 883, 905
TatI WGTACW 1 cut(s) 843
TfiI GAWTC 2 cut(s) 490, 540
Tru1I TTAA 6 cut(s) 327, 450, 642, 683, 819, 837
Tru9I TTAA 6 cut(s) 327, 450, 642, 683, 819, 837
TscAI CASTG 3 cut(s) 188, 284, 550
TspDTI ATGAA 5 cut(s) 245, 332, 576, 604, 734
TspGWI ACGGA 1 cut(s) 641
TspRI CASTG 3 cut(s) 188, 284, 550
Van91I CCANNNNNTGG 1 cut(s) 784
VspI ATTAAT 1 cut(s) 683
XapI RAATTY 2 cut(s) 177, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 701
XspI CTAG 1 cut(s) 531
ZrmI AGTACT 1 cut(s) 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.