Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

51280123 .. 51281722

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014318

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGACAACATTGTGGATTCTCTAAACAGCGCATACCAAGAGTTTGTTGTTGCTGCAGCTAATGTGCTCGAGGCCAAGGAAACTTCTGGCGGCCAAAAAACAACAGCCACGGATACTGCTCTAGAGAGCTTTAAGCAGAAGTGGGAACTTTTCAGAGTGACTTGTGATCAAGCAGAGGAGTTTGTGGAGTCTGTGAAGCAACGGATTGGCTCAGAGTGTCTGGTGGATGAGGCAACCGGCCCTGTGAACTTCAACATGGTTCTGGAACAGCTGCTGTATCAGCACACTCTCATCAATCAGCTCCTTTTGATGCTAGATTCTCTGAAGATTCAGCTCCATAGATTTCATCTTTGGAACATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.82

Weight (kDa)

4.82

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	253
AluBI	AGCT	5 cut(s)	59, 129, 271, 301, 334
AluI	AGCT	5 cut(s)	59, 129, 271, 301, 334
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	72, 91, 238
ApeKI	GCWGC	3 cut(s)	53, 56, 271
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	40, 68, 258
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	166
BfaI	CTAG	2 cut(s)	122, 314
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	4 cut(s)	54, 57, 91, 272
BlsI	GCNGC	4 cut(s)	55, 58, 92, 273
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	239
BmsI	GCATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	75, 108
Bse118I	RCCGGY	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	75, 108
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	3 cut(s)	40, 68, 258
BshFI	GGCC	3 cut(s)	74, 93, 240
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	237
BsnI	GGCC	3 cut(s)	74, 93, 240
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	74, 93, 240
BspCNI	CTCAG	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	236
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	75, 108
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	40, 68, 258
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	74, 93, 240
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	232
CaiI	CAGNNNCTG	1 cut(s)	274
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	239
CviAII	CATG	1 cut(s)	256
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	344
Eco88I	CYCGRG	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	259
FaiI	YATR	3 cut(s)	34, 257, 339
FatI	CATG	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	4 cut(s)	54, 57, 91, 272
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	54, 57, 91, 272
FspBI	CTAG	2 cut(s)	122, 314
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	54, 57, 91, 272
HaeIII	GGCC	3 cut(s)	74, 93, 240
HapII	CCGG	1 cut(s)	237
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	4 cut(s)	17, 188, 317, 328
HpaII	CCGG	1 cut(s)	237
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	155, 214, 324
Hpy188III	TCNNGA	2 cut(s)	122, 263
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	306, 339
LpnPI	CCDG	6 cut(s)	72, 206, 248, 250, 255, 346
Lsp1109I	GCAGC	3 cut(s)	40, 68, 258
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	2 cut(s)	122, 314
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	64, 169, 223
MseI	TTAA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	259
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	3 cut(s)	17, 317, 328
PkrI	GCNGC	4 cut(s)	55, 58, 92, 273
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	58
PstNI	CAGNNNCTG	1 cut(s)	274
PvuII	CAGCTG	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	54, 57, 91, 272
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	61, 131, 273, 303, 336, 365
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	122, 314
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	69
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	3 cut(s)	17, 317, 328
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	3 cut(s)	53, 56, 271
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	335
TspGWI	ACGGA	2 cut(s)	125, 217
XbaI	TCTAGA	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	2 cut(s)	122, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.