Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000176

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Reverse (-)

474305 .. 479241

Gene Structure 4937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_176G00431190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCAAAAGTGCTTGTGTCACTCGAACGGCTCGGGGCGGCACGGATGGTGGCGCGATCTTGCTAGTGCTGAACCAAGCCTCCATCTTGAGATTCTTCTTGCCGGTGGACTCCTCGGTGATGACTGCTTGGTCTGCAAGATGGACAACATTGTGGATTCTCTAAACAACGCATACCAAGAGTTTGTCGTTGCTGCAGCTAATGTGCTCGAGGCCAAGGAAACTTCTGGCGGCCAAAAAACAACAGCCACGGATACTGCTCTAGAGAGCTTTAAGCAGAAGTGGGAACTTTTCAGAGTGACTTGTGATCAAGCAGAGGAGTTTGTGGAGTCTGTGAAGCAACGGATTGGCTCAGAGTGTCTGGTGGATGAGGCAACCGGCCCTGTGGTAGGGAAGTCTGGGCAGACTACGACAACTGGTCTCCCGCCAATCAGTGCAGTTCGATTGGAACAGATGAGTAAAGCTGTTCGTTGGCTTGTCATAGAACTTCAACATGGTTCTGGAACAGCTGCTGGTTCAGCACACTCTCATCAATCAGCTCCCTTCGATGCTAGATTCTCTGAAGATTCAGCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.52

Weight (kDa)

5.09

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccII	CGCG	1 cut(s)	54
AciI	CCGC	3 cut(s)	37, 228, 422
AcoI	YGGCCR	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	488
AhdI	GACNNNNNGTC	1 cut(s)	414
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	6 cut(s)	197, 267, 461, 506, 536, 569
AluI	AGCT	6 cut(s)	197, 267, 461, 506, 536, 569
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	422
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	2 cut(s)	31, 206
AoxI	GGCC	3 cut(s)	210, 229, 376
ApeKI	GCWGC	3 cut(s)	191, 194, 506
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	31, 206
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	178, 206, 493
BccI	CCATC	3 cut(s)	39, 90, 133
BceAI	ACGGC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	244
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	3 cut(s)	63, 260, 549
BfmI	CTRYAG	1 cut(s)	192
BfuI	GTATCC	1 cut(s)	244
BisI	GCNGC	5 cut(s)	38, 192, 195, 229, 507
BlsI	GCNGC	5 cut(s)	39, 193, 196, 230, 508
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmeT110I	CYCGRG	2 cut(s)	31, 206
BmgT120I	GGNCC	1 cut(s)	377
BmsI	GCATC	1 cut(s)	535
BpuEI	CTTGAG	1 cut(s)	107
BsaI	GGTCTC	1 cut(s)	422
BsaJI	CCNNGG	3 cut(s)	112, 213, 246
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse118I	RCCGGY	2 cut(s)	101, 374
Bse1I	ACTGG	1 cut(s)	418
BseDI	CCNNGG	3 cut(s)	112, 213, 246
BseGI	GGATG	2 cut(s)	50, 370
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	2 cut(s)	101, 329
BseXI	GCAGC	3 cut(s)	178, 206, 493
BsgI	GTGCAG	1 cut(s)	453
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	212, 231, 378
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	2 cut(s)	31, 206
BsiSI	CCGG	2 cut(s)	102, 375
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	422
BsnI	GGCC	3 cut(s)	212, 231, 378
Bso31I	GGTCTC	1 cut(s)	422
BsoBI	CYCGRG	2 cut(s)	31, 206
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	2 cut(s)	55, 304
BspACI	CCGC	3 cut(s)	37, 228, 422
BspANI	GGCC	3 cut(s)	212, 231, 378
BspCNI	CTCAG	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	422
BsrFI	RCCGGY	2 cut(s)	101, 374
BsrI	ACTGG	1 cut(s)	418
BssAI	RCCGGY	2 cut(s)	101, 374
BssECI	CCNNGG	3 cut(s)	112, 213, 246
BssMI	GATC	2 cut(s)	55, 304
BssT1I	CCWWGG	1 cut(s)	213
BstDEI	CTNAG	1 cut(s)	349
BstDSI	CCRYGG	1 cut(s)	246
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	50, 370
BstFNI	CGCG	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	2 cut(s)	58, 307
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	2 cut(s)	55, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 515
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	178, 206, 493
BsuI	GTATCC	1 cut(s)	244
BsuRI	GGCC	3 cut(s)	212, 231, 378
BtgI	CCRYGG	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	50, 370
BtsIMutI	CAGTG	1 cut(s)	436
CaiI	CAGNNNCTG	1 cut(s)	509
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	2 cut(s)	101, 374
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	1 cut(s)	491
DdeI	CTNAG	1 cut(s)	349
DpnI	GATC	2 cut(s)	57, 306
DpnII	GATC	2 cut(s)	55, 304
DrdI	GACNNNNNNGTC	1 cut(s)	128
DriI	GACNNNNNGTC	1 cut(s)	414
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	422
Eco88I	CYCGRG	2 cut(s)	31, 206
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	213
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	494
FaiI	YATR	4 cut(s)	172, 479, 492, 574
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	5 cut(s)	38, 192, 195, 229, 507
FokI	GGATG	2 cut(s)	57, 377
Fsp4HI	GCNGC	5 cut(s)	38, 192, 195, 229, 507
FspBI	CTAG	3 cut(s)	63, 260, 549
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	5 cut(s)	38, 192, 195, 229, 507
HaeIII	GGCC	3 cut(s)	212, 231, 378
HapII	CCGG	2 cut(s)	102, 375
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HinfI	GANTC	6 cut(s)	91, 108, 155, 326, 552, 563
HpaII	CCGG	2 cut(s)	102, 375
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	107
Hpy188I	TCNGA	3 cut(s)	293, 352, 559
Hpy188III	TCNNGA	3 cut(s)	86, 260, 498
Hpy8I	GTNNAC	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	550
HpyCH4V	TGCA	4 cut(s)	4, 135, 194, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 515
HpyF3I	CTNAG	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	55, 304
LmnI	GCTCC	2 cut(s)	541, 574
LpnPI	CCDG	9 cut(s)	115, 210, 344, 381, 388, 393, 399, 483, 495
Lsp1109I	GCAGC	3 cut(s)	178, 206, 493
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	3 cut(s)	63, 260, 549
MaeIII	GTNAC	2 cut(s)	17, 295
MalI	GATC	2 cut(s)	57, 306
MboI	GATC	2 cut(s)	55, 304
MboII	GAAGA	2 cut(s)	86, 572
MhlI	GDGCHC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	102, 335
MnlI	CCTC	5 cut(s)	89, 122, 202, 307, 361
MseI	TTAA	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	506
MspI	CCGG	2 cut(s)	102, 375
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	132, 515
NdeII	GATC	2 cut(s)	55, 304
NlaIII	CATG	1 cut(s)	494
NmuCI	GTSAC	2 cut(s)	17, 295
PaeR7I	CTCGAG	1 cut(s)	206
PfeI	GAWTC	4 cut(s)	91, 155, 552, 563
PkrI	GCNGC	5 cut(s)	39, 193, 196, 230, 508
PleI	GAGTC	2 cut(s)	102, 334
PpsI	GAGTC	2 cut(s)	102, 334
PspPI	GGNCC	1 cut(s)	377
PspXI	VCTCGAGB	1 cut(s)	206
PstI	CTGCAG	1 cut(s)	196
PstNI	CAGNNNCTG	1 cut(s)	509
PvuII	CAGCTG	1 cut(s)	506
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	5 cut(s)	38, 192, 195, 229, 507
Sau3AI	GATC	2 cut(s)	55, 304
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	102, 335
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	199, 269, 463, 508, 538, 571
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	86, 206
SmoI	CTYRAG	2 cut(s)	86, 206
SsiI	CCGC	3 cut(s)	37, 228, 422
SspMI	CTAG	3 cut(s)	63, 260, 549
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	4 cut(s)	23, 207, 439, 543
TauI	GCSGC	2 cut(s)	40, 231
TfiI	GAWTC	4 cut(s)	91, 155, 552, 563
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	2 cut(s)	17, 295
TseI	GCWGC	3 cut(s)	191, 194, 506
Tsp45I	GTSAC	2 cut(s)	17, 295
TspGWI	ACGGA	3 cut(s)	57, 263, 355
TspRI	CASTG	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	384
XbaI	TCTAGA	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	206
XspI	CTAG	3 cut(s)	63, 260, 549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.