Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

13081539 .. 13084899

Gene Structure 3361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1068400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGAAGTACGAGCCTCAAAATGGACAGCATTGTAGATTCTCTAAATAGTGCATACCAAGAGTTTGTTGTTGCAGCAGCTAATGTGCTTGAATCCAAGGAAACTTCTGGTGGTCAGAAAACAGCAGCCACAGATGCTGCTCTTGAGAATTTTAAGCAGAAGTGGGAACTTTTCAGAGTCACTTGTGATCAAGCGGAGGAGTTTGTGGAGTCCGTGAAGCAAAGAATTGGATCAGAGTGCCTGGTGGATGAGGCAACTGGTTTGGTGGCTGGGAAGACTGGGCAAACTGCAACTGGTCTGCCACCCATTAGTGCGGTTCGGTTGGAACAGATGAGTAAAGCAGTTCGATGGCTGGTTATAGAACTTCAACATGGCTCTGGAACTGCTGCTGGTGCAGCACATTCTCATCCTTCAACTCCTTTTGATAGTAGATTCTCTGAAGATTCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.08

Weight (kDa)

4.91

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	194, 314
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	148
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	92, 368, 414
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	2 cut(s)	80, 449
AluI	AGCT	2 cut(s)	80, 449
AlwI	GGATC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	137
ApeKI	GCWGC	6 cut(s)	74, 77, 125, 137, 386, 395
ApoI	RAATTY	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	281
BbvI	GCAGC	6 cut(s)	86, 89, 124, 137, 373, 407
BccI	CCATC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	242
BclI	TGATCA	1 cut(s)	187
BisI	GCNGC	6 cut(s)	75, 78, 126, 138, 387, 396
BlsI	GCNGC	6 cut(s)	76, 79, 127, 139, 388, 397
Bme1390I	CCNGG	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	262, 283, 298
BseBI	CCWGG	1 cut(s)	242
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	253, 406
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseNI	ACTGG	3 cut(s)	262, 283, 298
BseRI	GAGGAG	1 cut(s)	212
BseXI	GCAGC	6 cut(s)	86, 89, 124, 137, 373, 407
BseYI	CCCAGC	1 cut(s)	269
BsgI	GTGCAG	1 cut(s)	414
BslI	CCNNNNNNNGG	1 cut(s)	22
Bsp143I	GATC	2 cut(s)	187, 230
BspACI	CCGC	2 cut(s)	194, 314
BspPI	GGATC	1 cut(s)	238
BsrI	ACTGG	3 cut(s)	262, 283, 298
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	187, 230
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	253, 406
BstKTI	GATC	2 cut(s)	190, 233
BstMBI	GATC	2 cut(s)	187, 230
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 392, 395
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	240
BstV1I	GCAGC	6 cut(s)	86, 89, 124, 137, 373, 407
BstV2I	GAAGAC	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	253, 406
CaiI	CAGNNNCTG	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	7 cut(s)	15, 80, 128, 269, 352, 375, 449
CviKI_1	RGCY	7 cut(s)	15, 80, 128, 269, 352, 375, 449
CviQI	GTAC	1 cut(s)	9
DpnI	GATC	2 cut(s)	189, 232
DpnII	GATC	2 cut(s)	187, 230
Eco130I	CCWWGG	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	1 cut(s)	374
FaiI	YATR	3 cut(s)	55, 359, 372
FatI	CATG	1 cut(s)	370
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	6 cut(s)	75, 78, 126, 138, 387, 396
FokI	GGATG	2 cut(s)	260, 393
Fsp4HI	GCNGC	6 cut(s)	75, 78, 126, 138, 387, 396
GluI	GCNGC	6 cut(s)	75, 78, 126, 138, 387, 396
GsaI	CCCAGC	1 cut(s)	273
Hin1II	CATG	1 cut(s)	374
HinfI	GANTC	6 cut(s)	38, 92, 177, 209, 432, 443
Hpy188I	TCNGA	4 cut(s)	117, 176, 235, 439
Hpy188III	TCNNGA	2 cut(s)	143, 378
HpyAV	CCTTC	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	53, 74, 290, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 392, 395
Hsp92II	CATG	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	187, 230
Lsp1109I	GCAGC	6 cut(s)	86, 89, 124, 137, 373, 407
LweI	GCATC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	189, 232
MboI	GATC	2 cut(s)	187, 230
MboII	GAAGA	2 cut(s)	286, 452
MluCI	AATT	2 cut(s)	148, 225
MlyI	GAGTC	2 cut(s)	186, 218
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	3 cut(s)	26, 190, 244
MseI	TTAA	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	242
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	134, 392, 395
NdeII	GATC	2 cut(s)	187, 230
NlaIII	CATG	1 cut(s)	374
NmuCI	GTSAC	1 cut(s)	178
PfeI	GAWTC	4 cut(s)	38, 92, 432, 443
PkrI	GCNGC	6 cut(s)	76, 79, 127, 139, 388, 397
PleI	GAGTC	2 cut(s)	185, 217
PpsI	GAGTC	2 cut(s)	185, 217
Psp6I	CCWGG	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	240
PstNI	CAGNNNCTG	1 cut(s)	137
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	6 cut(s)	75, 78, 126, 138, 387, 396
Sau3AI	GATC	2 cut(s)	187, 230
SchI	GAGTC	2 cut(s)	186, 218
ScrFI	CCNGG	1 cut(s)	242
SetI	ASST	2 cut(s)	82, 451
SfaNI	GCATC	1 cut(s)	124
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	148, 225
SsiI	CCGC	2 cut(s)	194, 314
StyD4I	CCNGG	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	96
TaqI	TCGA	1 cut(s)	346
TasI	AATT	2 cut(s)	148, 225
TfiI	GAWTC	4 cut(s)	38, 92, 432, 443
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	6 cut(s)	74, 77, 125, 137, 386, 395
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	202
XapI	RAATTY	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.