Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

19527841 .. 19528143

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G011080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGACAACATTGTGGATTCTCTAAACAACGCATACCAAGAGTTTGTTGTTGCTGCAGCTAATGTGCTCGAGGCCAAGGAAACTTCTGGCGGCCAAAAAACAACAGCCACGGATACTGCTCTAGAGAGCTTTCAGCAGAAGTGGGAACTCTTCAGAGTGACTTGTGATCAAGCAGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATTGGCTCAGAGTGTCTGGTGGATGAGGCAACCGGCCCTGTGGTAGGGAAGTCTGGGCAGACTACGACAACTGGTCTCCCACCAATCAGTGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

10.7

Weight (kDa)

4.28

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	90
AcoI	YGGCCR	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	248
AhdI	GACNNNNNGTC	1 cut(s)	276
AluBI	AGCT	2 cut(s)	59, 129
AluI	AGCT	2 cut(s)	59, 129
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	284
Ama87I	CYCGRG	1 cut(s)	68
AoxI	GGCC	3 cut(s)	72, 91, 238
ApeKI	GCWGC	2 cut(s)	53, 56
AspS9I	GGNCC	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	40, 68
BciVI	GTATCC	1 cut(s)	106
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	3 cut(s)	54, 57, 91
BlsI	GCNGC	3 cut(s)	55, 58, 92
BmeRI	GACNNNNNGTC	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	2 cut(s)	75, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	75, 108
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	40, 68
BshFI	GGCC	3 cut(s)	74, 93, 240
BsiHKAI	GWGCWC	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	74, 93, 240
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	90
BspANI	GGCC	3 cut(s)	74, 93, 240
BspCNI	CTCAG	1 cut(s)	224
BspMAI	CTGCAG	1 cut(s)	58
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	2 cut(s)	75, 108
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
Bst6I	CTCTTC	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	211
BstDSI	CCRYGG	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	166
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	2 cut(s)	40, 68
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	74, 93, 240
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	239
CviJI	RGCY	7 cut(s)	59, 74, 93, 107, 129, 210, 240
CviKI_1	RGCY	7 cut(s)	59, 74, 93, 107, 129, 210, 240
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	155
Eam1105I	GACNNNNNGTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	68
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	3 cut(s)	54, 57, 91
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	3 cut(s)	54, 57, 91
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	3 cut(s)	54, 57, 91
HaeIII	GGCC	3 cut(s)	74, 93, 240
HapII	CCGG	1 cut(s)	237
HinfI	GANTC	2 cut(s)	17, 188
HpaII	CCGG	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	155, 214
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	56, 296
HpyF3I	CTNAG	1 cut(s)	211
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	72, 206, 243, 250, 255, 261
Lsp1109I	GCAGC	2 cut(s)	40, 68
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	64, 169, 223
MspI	CCGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	166
NmuCI	GTSAC	1 cut(s)	157
PaeR7I	CTCGAG	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	55, 58, 92
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	239
PspXI	VCTCGAGB	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	58
SatI	GCNGC	3 cut(s)	54, 57, 91
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	2 cut(s)	61, 131
SfcI	CTRYAG	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	69
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	298
XagI	CCTNNNNNAGG	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	121
XhoI	CTCGAG	1 cut(s)	68
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.