Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Reverse (-)

7367275 .. 7371338

Gene Structure 4064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g08450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACAACATTGTGGATTCTCTAAACAATGCATACCAAGAGTTTGTTGTTGCAGCAGCTAATGTGCTCGAAGCCAAGGAAACTTCTGGGGGCCAAAAAACAACCGCCACAGACACTGCTCTAGAGAGCTTTAAGCAGAAGTGGGAACTTTTCAGAGTGACTTGTGATCAAGCAGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATTGGCTCAGAGTGTCTGGTGGATGAGGCAACCGGCCCTGTGGTAGGGAAGTCTGGGCAGACTACCACAACTGGTCTCCCACCCATCAGTGCAGTTCGATTGGAACAGATGAGTAAAGCTGTTCGATGGCTTGTGATAGAACTTCAACATGGTTCTGGTACAGCCTCTGGTTCAGCACATTCTCATCAATCAGCTCCTTTTGATGCTAGATTCTCTGAAGATTCAGCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.56

Weight (kDa)

4.79

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	364
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	1 cut(s)	350
AluBI	AGCT	5 cut(s)	59, 129, 323, 398, 431
AluI	AGCT	5 cut(s)	59, 129, 323, 398, 431
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	284
AlwNI	CAGNNNCTG	2 cut(s)	116, 371
AoxI	GGCC	2 cut(s)	91, 238
ApeKI	GCWGC	2 cut(s)	53, 56
AspS9I	GGNCC	2 cut(s)	91, 239
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	65, 68
BccI	CCATC	2 cut(s)	296, 324
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	2 cut(s)	122, 411
BisI	GCNGC	2 cut(s)	54, 57
BlsI	GCNGC	2 cut(s)	55, 58
BmgT120I	GGNCC	2 cut(s)	91, 239
BmiI	GGNNCC	1 cut(s)	92
BmsI	GCATC	1 cut(s)	397
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse118I	RCCGGY	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	65, 68
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	93, 240
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	93, 240
Bso31I	GGTCTC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	2 cut(s)	93, 240
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	75
BstDEI	CTNAG	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	232
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	65, 68
BsuRI	GGCC	2 cut(s)	93, 240
BtsCI	GGATG	1 cut(s)	232
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 298
CaiI	CAGNNNCTG	2 cut(s)	116, 371
Cfr10I	RCCGGY	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	91, 239
Csp6I	GTAC	1 cut(s)	363
CviAII	CATG	1 cut(s)	353
CviQI	GTAC	1 cut(s)	363
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	34
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	1 cut(s)	356
FaiI	YATR	3 cut(s)	34, 354, 436
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	54, 57
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	2 cut(s)	54, 57
FspBI	CTAG	2 cut(s)	122, 411
GluI	GCNGC	2 cut(s)	54, 57
HaeIII	GGCC	2 cut(s)	93, 240
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	1 cut(s)	356
HinfI	GANTC	4 cut(s)	17, 188, 414, 425
HpaII	CCGG	1 cut(s)	237
Hpy188I	TCNGA	3 cut(s)	155, 214, 421
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	32, 53, 296
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	403, 436
LpnPI	CCDG	8 cut(s)	72, 206, 243, 250, 255, 261, 345, 357
Lsp1109I	GCAGC	2 cut(s)	65, 68
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	2 cut(s)	122, 411
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	3 cut(s)	169, 223, 379
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	1 cut(s)	132
MspI	CCGG	1 cut(s)	237
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	17, 414, 425
PkrI	GCNGC	2 cut(s)	55, 58
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	2 cut(s)	91, 239
PstNI	CAGNNNCTG	2 cut(s)	116, 371
RsaI	GTAC	1 cut(s)	364
RsaNI	GTAC	1 cut(s)	363
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	54, 57
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	91, 239
SchI	GAGTC	1 cut(s)	197
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	61, 131, 325, 400, 433
SfaNI	GCATC	1 cut(s)	397
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	2 cut(s)	122, 411
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	3 cut(s)	69, 301, 328
TfiI	GAWTC	3 cut(s)	17, 414, 425
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	2 cut(s)	121, 298
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	53, 56
Tsp45I	GTSAC	1 cut(s)	157
TspRI	CASTG	2 cut(s)	121, 298
XagI	CCTNNNNNAGG	1 cut(s)	246
XbaI	TCTAGA	1 cut(s)	121
XspI	CTAG	2 cut(s)	122, 411
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.