Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012475

Physical Location & Seq

Genomic Coordinates Forward (+)

13174644 .. 13177260

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G100500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACAACATAGTAGATTCTCTAAACAATGCATACCAAGAGTTCGTTGTTGCAGCAGCTAATGTGCTCGAAGCCAAGGAAACTTCTGGCGCCCAGAAAACAGCAGCCACAGATGCTGCTCTTGAGAATTTTAAGCAGAAGTGGGAGCTTTTCAGAGTCACTTGTGATCAAGCGGAGGAGTTTGTGGAGTCTGTGAAGCAAAGGATTGGCTCAGAGTGCCTGGTGGACGAGGCAACTGGCTTGGTGGCTGGGAAGTCTGGGCAAACCGCAACTGGTCTTCCACCCATTAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCTGTTCGATGTCTTGTCATAGAACTTCAAAATGGTTCTGGAACTGCTGCTGGTTCAGCACATTCTCATCTGTCAACTCCTTTTGATGGCAGATTCTCTGAAGATTCAGCTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0009636 GO:0010035 GO:0016592 GO:0022622 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0070013 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.31

Weight (kDa)

4.69

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012475)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11760
fragaria_vesca	FvH4_2g08450
malus_domestica	MD05G1068400.v1.1 MD10G1078600.v1.1
prunus_persica	Prupe.5G020100_v2.0.a1 Prupe.8G100500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0263731 RchiOBHm_Chr6g0264001
rosa_laevigata	RLG00000014318
rosa_roxburghii	Rroxscaffold_176G00431190 Rroxscaffold_7G00204000
rosa_rugosa	Rorug06G0006100 Rorug06G0006200
rosa_samantha	Rh6AG125500 Rh6BG121800 Rh6CG120100 Rh6DG107900
rosa_wichuraiana	Rw6G010910 Rw6G011080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	173, 267
AcsI	RAATTY	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	90
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	59, 148, 320, 428
AluI	AGCT	4 cut(s)	59, 148, 320, 428
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	1 cut(s)	116
ApeKI	GCWGC	5 cut(s)	53, 56, 104, 116, 365
ApoI	RAATTY	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	5 cut(s)	65, 68, 103, 116, 352
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	166
BfoI	RGCGCY	1 cut(s)	93
BisI	GCNGC	5 cut(s)	54, 57, 105, 117, 366
BlsI	GCNGC	5 cut(s)	55, 58, 106, 118, 367
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	103
BpiI	GAAGAC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	143
BsaHI	GRCGYC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	241, 277
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	241, 277
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	5 cut(s)	65, 68, 103, 116, 352
BseYI	CCCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	2 cut(s)	173, 267
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	2 cut(s)	241, 277
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	90
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	221
BstACI	GRCGYC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 216, 374
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	5 cut(s)	65, 68, 103, 116, 352
BstV2I	GAAGAC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	92
CviJI	RGCY	9 cut(s)	59, 74, 107, 148, 210, 240, 248, 320, 428
CviKI_1	RGCY	9 cut(s)	59, 74, 107, 148, 210, 240, 248, 320, 428
DdeI	CTNAG	1 cut(s)	211
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	34
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	75
FaiI	YATR	3 cut(s)	11, 34, 338
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	54, 57, 105, 117, 366
Fsp4HI	GCNGC	5 cut(s)	54, 57, 105, 117, 366
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	5 cut(s)	54, 57, 105, 117, 366
GsaI	CCCAGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	93
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	90
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HinfI	GANTC	5 cut(s)	17, 156, 188, 411, 422
Hpy166II	GTNNAC	2 cut(s)	226, 393
Hpy188I	TCNGA	3 cut(s)	155, 214, 418
Hpy188III	TCNNGA	2 cut(s)	122, 357
Hpy8I	GTNNAC	2 cut(s)	226, 393
HpyCH4V	TGCA	3 cut(s)	32, 53, 293
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 216, 374
HpyF3I	CTNAG	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	90
HspAI	GCGC	1 cut(s)	90
KasI	GGCGCC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	5 cut(s)	65, 68, 103, 116, 352
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	2 cut(s)	269, 431
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	127
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	2 cut(s)	165, 197
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	169, 223
Mph1103I	ATGCAT	1 cut(s)	34
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	113, 216, 374
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	34
PfeI	GAWTC	3 cut(s)	17, 411, 422
PkrI	GCNGC	5 cut(s)	55, 58, 106, 118, 367
PleI	GAGTC	2 cut(s)	164, 196
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	2 cut(s)	164, 196
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	5 cut(s)	54, 57, 105, 117, 366
Sau3AI	GATC	1 cut(s)	166
SchI	GAGTC	2 cut(s)	165, 197
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	4 cut(s)	61, 150, 322, 430
SfaNI	GCATC	1 cut(s)	103
SfoI	GGCGCC	1 cut(s)	91
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	173, 267
SspDI	GGCGCC	1 cut(s)	89
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	75
TaqI	TCGA	2 cut(s)	69, 325
TasI	AATT	1 cut(s)	127
TfiI	GAWTC	3 cut(s)	17, 411, 422
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	5 cut(s)	53, 56, 104, 116, 365
Tsp45I	GTSAC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	127
Zsp2I	ATGCAT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.