Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Reverse (-)

3976839 .. 3979237

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGTACGAATCGGCGAACGTCTCCGACGACGCAGATCGTACGGCTTTCCGGCGAGCAGAGAAAAAATACAAACTTTACTATGAACAGGATTCTAAGTTCTCTAGAAAGAAGAAGCTACCAAAACCAATTGATTTGTCTGAGTTACTTGATTTCAATTTGATTTCACAAAATTTCAACAATGACGGTGTTTTGCCAGACGGAATTAGGGTTTCGAAAGTTGATTCTTCTCCTGTGTTCTGCATCGATAATCGCCCTGGTTTTTACTTTATACCTGATGCATTGAGTTTAAAGGAGCAATGTAAATGGATTAAAGAGAGCTTGACGAGTTTTCCGCAGCCTCCGAATAGAACAAACCACAATGCAATTTACGGTCCTATTGATGATTTGTTTGATTCAGCTAAAGAAAACAAGGTATTGGTTCAGGATGATCTTACCAACAACAAGTGGAAGTTCTATGAAGAAGTAGATATTGAAAAAGCAACACGAAGTAGTTGCAAATCAGTTTCAGCTTCAGTTCTTTTGAGGAAGCTTCGATGGAGCACTCTCGGTTTACAGTTCGATTGGTCCAAGCGTAACTATGATGTTTCTCTCCCTCATAACAACATCCCTGACGCACTCTGTCAACTAGCTAAGACACATGCCGCCATTGCAATGCCTGACGGAGAGGAATTTCGTCCAGAGGGGGCTATTGTAAACTATTTTGGCATAGGTGATACCCTTGGAGGCCACCTTGATGATATGGAAGCTGACTGGAGTAAACCCATAGTAAGCATGAGCTTGGGATGTAAAGCTATTTTCCTCTTAGGCGGAAAATCAAAAGACGATCCTCCTCATGCTATGTATCTCAGAAGTGGAGATGTTGTACTAATGGCTGGAGAAGCCAGAGAATGCTTTCACGGTATACCCCGTATCTTTACGGGTGAAGAAAATGCGGATATTGGTGCACTTGAATCAGAATTGTCCCATGAGAGTGGACATTTTTTCGCAGAGTATATCAAAACTTCGAGGATCAACATAAACATCAGGCAAGTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

345

Amino Acids

39.02

Weight (kDa)

5.58

Isoelectric Point (pI)

47.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	150 - 342	2.6e-37	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	901
AciI	CCGC	4 cut(s)	332, 642, 807, 932
AclWI	GGATC	2 cut(s)	818, 1016
AcsI	RAATTY	2 cut(s)	169, 668
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	3 cut(s)	5, 40, 864
AgsI	TTSAA	4 cut(s)	154, 175, 473, 950
AjnI	CCWGG	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	80, 112
AluBI	AGCT	9 cut(s)	115, 318, 398, 509, 529, 629, 746, 777, 791
AluI	AGCT	9 cut(s)	115, 318, 398, 509, 529, 629, 746, 777, 791
Alw21I	GWGCWC	2 cut(s)	542, 946
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	942
AlwI	GGATC	2 cut(s)	818, 1016
AoxI	GGCC	1 cut(s)	724
ApaLI	GTGCAC	1 cut(s)	942
ApeKI	GCWGC	1 cut(s)	334
ApoI	RAATTY	2 cut(s)	169, 668
Asp700I	GAANNNNTTC	1 cut(s)	891
AspS9I	GGNCC	2 cut(s)	371, 564
AsuHPI	GGTGA	2 cut(s)	722, 932
AsuII	TTCGAA	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	371, 564
BaeGI	GKGCMC	1 cut(s)	946
Bbv12I	GWGCWC	2 cut(s)	542, 946
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	1 cut(s)	528
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	2 cut(s)	102, 626
BisI	GCNGC	2 cut(s)	335, 642
BlsI	GCNGC	2 cut(s)	336, 643
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	2 cut(s)	371, 564
BmgT120I	GGNCC	2 cut(s)	371, 564
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	249, 265
BpmI	CTGGAG	2 cut(s)	772, 894
Bpu14I	TTCGAA	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	253, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bse1I	ACTGG	1 cut(s)	755
Bse3DI	GCAATG	3 cut(s)	302, 645, 657
BseBI	CCWGG	1 cut(s)	255
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	2 cut(s)	253, 718
BseGI	GGATG	3 cut(s)	430, 603, 788
BseMI	GCAATG	3 cut(s)	302, 645, 657
BseMII	CTCAG	2 cut(s)	129, 859
BseNI	ACTGG	1 cut(s)	755
BseRI	GAGGAG	1 cut(s)	819
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	1 cut(s)	346
BshFI	GGCC	1 cut(s)	726
BshVI	ATCGAT	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	542, 946
BsiSI	CCGG	1 cut(s)	49
BsiWI	CGTACG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	946
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	946
BsmI	GAATGC	1 cut(s)	893
BsnI	GGCC	1 cut(s)	726
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	542, 946
Bsp143I	GATC	4 cut(s)	34, 427, 823, 1008
BspACI	CCGC	4 cut(s)	332, 642, 807, 932
BspANI	GGCC	1 cut(s)	726
BspCNI	CTCAG	2 cut(s)	130, 858
BspDI	ATCGAT	1 cut(s)	243
BspPI	GGATC	2 cut(s)	818, 1016
BspT104I	TTCGAA	1 cut(s)	212
BsrDI	GCAATG	3 cut(s)	302, 645, 657
BsrI	ACTGG	1 cut(s)	755
BssECI	CCNNGG	2 cut(s)	253, 718
BssMI	GATC	4 cut(s)	34, 427, 823, 1008
BssNAI	GTATAC	1 cut(s)	902
BssT1I	CCWWGG	1 cut(s)	718
Bst1107I	GTATAC	1 cut(s)	902
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	4 cut(s)	185, 371, 555, 899
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	54
BstDEI	CTNAG	5 cut(s)	93, 138, 630, 802, 845
BstF5I	GGATG	3 cut(s)	430, 603, 788
BstKTI	GATC	4 cut(s)	37, 430, 826, 1011
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	34, 427, 823, 1008
BstMWI	GCNNNNNNNGC	2 cut(s)	647, 878
BstNI	CCWGG	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	946
BstV1I	GCAGC	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	971
BstZ17I	GTATAC	1 cut(s)	902
Bsu15I	ATCGAT	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	726
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	430, 603, 788
Cac8I	GCNNGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	371, 564
ClaI	ATCGAT	1 cut(s)	243
CseI	GACGC	2 cut(s)	38, 620
Csp6I	GTAC	3 cut(s)	4, 39, 863
CviAII	CATG	4 cut(s)	638, 772, 833, 965
CviQI	GTAC	3 cut(s)	4, 39, 863
DdeI	CTNAG	5 cut(s)	93, 138, 630, 802, 845
DpnI	GATC	4 cut(s)	36, 429, 825, 1010
DpnII	GATC	4 cut(s)	34, 427, 823, 1008
DraI	TTTAAA	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	1 cut(s)	718
Eco47I	GGWCC	2 cut(s)	371, 564
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	641, 775, 836, 968
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	4 cut(s)	637, 771, 832, 964
FblI	GTMKAC	1 cut(s)	901
Fnu4HI	GCNGC	2 cut(s)	335, 642
FokI	GGATG	3 cut(s)	437, 590, 795
Fsp4HI	GCNGC	2 cut(s)	335, 642
FspBI	CTAG	2 cut(s)	102, 626
GluI	GCNGC	2 cut(s)	335, 642
GsuI	CTGGAG	2 cut(s)	772, 894
HaeIII	GGCC	1 cut(s)	726
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	2 cut(s)	38, 620
Hin1II	CATG	4 cut(s)	641, 775, 836, 968
HincII	GTYRAC	1 cut(s)	623
HindII	GTYRAC	1 cut(s)	623
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	5 cut(s)	8, 89, 221, 392, 950
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	722, 932
Hpy166II	GTNNAC	7 cut(s)	551, 623, 694, 758, 902, 944, 974
Hpy188I	TCNGA	6 cut(s)	25, 139, 342, 848, 955, 1037
Hpy188III	TCNNGA	3 cut(s)	102, 422, 677
Hpy8I	GTNNAC	7 cut(s)	551, 623, 694, 758, 902, 944, 974
Hpy99I	CGWCG	2 cut(s)	29, 32
HpyCH4III	ACNGT	4 cut(s)	185, 371, 555, 899
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	6 cut(s)	240, 278, 362, 495, 650, 944
HpyF10VI	GCNNNNNNNGC	2 cut(s)	647, 878
HpyF3I	CTNAG	5 cut(s)	93, 138, 630, 802, 845
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	4 cut(s)	641, 775, 836, 968
Kzo9I	GATC	4 cut(s)	34, 427, 823, 1008
LmnI	GCTCC	2 cut(s)	292, 537
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	249, 265
MaeI	CTAG	2 cut(s)	102, 626
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	141, 572
MalI	GATC	4 cut(s)	36, 429, 825, 1010
MboI	GATC	4 cut(s)	34, 427, 823, 1008
MboII	GAAGA	4 cut(s)	121, 216, 470, 935
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	2 cut(s)	542, 946
MluCI	AATT	7 cut(s)	126, 154, 169, 201, 363, 668, 956
MmeI	TCCRAC	1 cut(s)	48
Mph1103I	ATGCAT	1 cut(s)	280
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	2 cut(s)	287, 309
MslI	CAYNNNNRTG	3 cut(s)	650, 732, 969
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	255
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	893
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	647, 878
NdeII	GATC	4 cut(s)	34, 427, 823, 1008
NlaIII	CATG	4 cut(s)	641, 775, 836, 968
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	893
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	5 cut(s)	8, 89, 221, 392, 950
Pfl23II	CGTACG	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	336, 643
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspLI	CGTACG	1 cut(s)	38
PspPI	GGNCC	2 cut(s)	371, 564
RsaI	GTAC	3 cut(s)	5, 40, 864
RsaNI	GTAC	3 cut(s)	4, 39, 863
RseI	CAYNNNNRTG	3 cut(s)	650, 732, 969
SaqAI	TTAA	2 cut(s)	287, 309
SatI	GCNGC	2 cut(s)	335, 642
Sau3AI	GATC	4 cut(s)	34, 427, 823, 1008
Sau96I	GGNCC	2 cut(s)	371, 564
ScrFI	CCNGG	1 cut(s)	255
SduI	GDGCHC	2 cut(s)	542, 946
SfaNI	GCATC	2 cut(s)	249, 265
SfuI	TTCGAA	1 cut(s)	212
SinI	GGWCC	2 cut(s)	371, 564
SmiMI	CAYNNNNRTG	3 cut(s)	650, 732, 969
Sse9I	AATT	7 cut(s)	126, 154, 169, 201, 363, 668, 956
SsiI	CCGC	4 cut(s)	332, 642, 807, 932
SspMI	CTAG	2 cut(s)	102, 626
StyD4I	CCNGG	1 cut(s)	253
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	4 cut(s)	185, 371, 555, 899
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	5 cut(s)	212, 243, 532, 558, 1004
TasI	AATT	7 cut(s)	126, 154, 169, 201, 363, 668, 956
TatI	WGTACW	1 cut(s)	862
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	5 cut(s)	8, 89, 221, 392, 950
Tru1I	TTAA	2 cut(s)	287, 309
Tru9I	TTAA	2 cut(s)	287, 309
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	96, 471
TspGWI	ACGGA	2 cut(s)	213, 675
VneI	GTGCAC	1 cut(s)	942
VpaK11BI	GGWCC	2 cut(s)	371, 564
XapI	RAATTY	2 cut(s)	169, 668
XbaI	TCTAGA	1 cut(s)	101
XceI	RCATGY	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	901
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	2 cut(s)	102, 626
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.