Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001089.1

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

15774 .. 16567

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001089.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcttggggggcacctggatgacatggaagctgattggagtaagcctattgtaagcatgagtttaggctgcaaagcaatattccttctgggaggaaagcttagagaggatcctccattagcaatgttccttcgaagtggtgatgttgtacttatggctggagaagcaagagaatgctttcacggcgtgcctcggatattcacagacacagaaaatgctgaaattgtgcctcttgagcagcagttctcacacgaggatgattcaagttttttagaatacatccaaacttcaagaatcaacatcaacattagacaagtattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

107

Amino Acids

12.04

Weight (kDa)

4.65

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	12
AclWI	GGATC	2 cut(s)	104, 117
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	264, 291
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	2 cut(s)	32, 100
AluI	AGCT	2 cut(s)	32, 100
AlwI	GGATC	2 cut(s)	104, 117
ApeKI	GCWGC	2 cut(s)	69, 238
Asp700I	GAANNNNTTC	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	15
BamHI	GGATCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	12
BauI	CACGAG	1 cut(s)	251
BbvI	GCAGC	2 cut(s)	56, 250
BceAI	ACGGC	1 cut(s)	199
BciT130I	CCWGG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	70, 239
BlsI	GCNGC	2 cut(s)	71, 240
Bme1390I	CCNGG	1 cut(s)	17
BmiI	GGNNCC	2 cut(s)	14, 111
BmrFI	CCNGG	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	180
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	191
BseGI	GGATG	3 cut(s)	25, 262, 279
BseMI	GCAATG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	2 cut(s)	56, 250
BshNI	GGYRCC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	14, 111
BspPI	GGATC	2 cut(s)	104, 117
BspT104I	TTCGAA	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	251
Bst2BI	CACGAG	1 cut(s)	251
Bst2UI	CCWGG	1 cut(s)	17
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	25, 262, 279
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 164, 183, 235
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	56, 250
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BtsCI	GGATG	3 cut(s)	25, 262, 279
Cac8I	GCNNGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	25, 58
CviJI	RGCY	5 cut(s)	32, 46, 69, 100, 158
CviKI_1	RGCY	5 cut(s)	32, 46, 69, 100, 158
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
DraIII	CACNNNGTG	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	15
FaeI	CATG	2 cut(s)	28, 61
FaiI	YATR	3 cut(s)	26, 59, 155
FatI	CATG	2 cut(s)	24, 57
Fnu4HI	GCNGC	2 cut(s)	70, 239
FokI	GGATG	3 cut(s)	32, 266, 269
Fsp4HI	GCNGC	2 cut(s)	70, 239
GluI	GCNGC	2 cut(s)	70, 239
GsuI	CTGGAG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	28, 61
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	260, 294
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	195, 323
Hpy188III	TCNNGA	2 cut(s)	233, 291
HpyAV	CCTTC	2 cut(s)	95, 140
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 164, 183, 235
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	28, 61
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	4 cut(s)	2, 29, 74, 144
Lsp1109I	GCAGC	2 cut(s)	56, 250
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	1 cut(s)	222
MnlI	CCTC	6 cut(s)	86, 100, 123, 201, 240, 247
MroXI	GAANNNNTTC	1 cut(s)	177
MslI	CAYNNNNRTG	2 cut(s)	18, 255
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	4 cut(s)	10, 164, 183, 235
NdeII	GATC	1 cut(s)	109
NlaIII	CATG	2 cut(s)	28, 61
NlaIV	GGNNCC	2 cut(s)	14, 111
NspV	TTCGAA	1 cut(s)	133
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	260, 294
PkrI	GCNGC	2 cut(s)	71, 240
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	14, 111
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	2 cut(s)	18, 255
SatI	GCNGC	2 cut(s)	70, 239
Sau3AI	GATC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	3 cut(s)	18, 34, 102
SfuI	TTCGAA	1 cut(s)	133
SmiMI	CAYNNNNRTG	2 cut(s)	18, 255
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	1 cut(s)	222
SspI	AATATT	1 cut(s)	81
StyD4I	CCNGG	1 cut(s)	15
TaqI	TCGA	1 cut(s)	133
TasI	AATT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	260, 294
TseI	GCWGC	2 cut(s)	69, 238
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.