Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0010324

Physical Location & Seq

Genomic Coordinates Forward (+)

52366540 .. 52370147

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG302000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTACGGATCCGATTCGGCTTCGGAGGATTTGGAGCGAACCGCTTTCCGAAAAGCCGAGAAGAAGTACAAGCTCTATTACCAAGACACTTACAGAACCCCCAAGAAGAAAAAGCAACCGAAGCCGGTGGATTTATCTGAGGTTTTGGATTTCAAGTCCATTCTGGAATCACATGATCAAAACGCTGAGCTTCCATCTGGAATCGCTCCGGTTCGGTGCGGTTTGGACCGTCCGGTTTTCTCCATAGAGAATCGCCCAGGATTTTATTTCATTCCAGGAGCACTGACTATAGAACAACAATGTCAATGGATAAAGGATTGTTTAACCAGCTTCCCACAACCTCCTAACAGAACAAATCACAATGCTTTTTATGGGCCTATAAATGATTTATTTATTGCAGCAAAGGAGAGGAAAATTTTAGTTGCAAAAGAGAATTCAAATTCTGAATGTAATCCTTCTGTCAGCAATAGAGATGCGCAAGGGTGGAAGTTCTTTGAGGAACATGAAACATCATCAAAAGGAAACTCACGCAAATCAATTTCAGCTTCAGTTCTGTTGCGGAAACTGCGTTGGAGCACCCTTGGCCTGCAATTTGAGTGGTCCAAGCGAAACTATGATGTTTCCCTTCCACATAAAAAGATCCCTGATACACTCTGTCAACTGGCTAAAAAACTGGCAGCACCTGCAATGCCCTCGAGTGAAGATTTCCAGCCTGAAGCTGCAATAGTGAACTACTTTGGCTTAGGTGATATGCTTGGGGGGCACCTGGATGACATGGAAGCTGATTGGAGTAAGCCTATTGTAAGCATGAGTTTAGGCTGCAAAGCAATATTCCTTCTGGGGGGAAAGCTTAGAGAGGATCCTCCATTAGCAATGTTCCTTCGAAGTGGTGATGTTGTACTTATGGCTGGAGAAGCAAGAGAATGCTTTCACGGTATGTGCGAGTCTTCAGCTATCTTGAAATGGTTAATGTTCTTTGTAGTTCAAGATATTAAACTGATTCTGAAGATTAATCTGTTGATGGTAAGACCAATCAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008198 GO:0009987 GO:0016070 GO:0016491 GO:0016705 GO:0016706 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035510 GO:0035511 GO:0035552 GO:0042245 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043734 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044728 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0070013 GO:0070579 GO:0070988 GO:0070989 GO:0071704 GO:0080111 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy_2

Protein Analysis

347

Amino Acids

39.26

Weight (kDa)

8.64

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_2	PF13532	167 - 313	1.6e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010324)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11780
fragaria_vesca	FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730 FvH4_4g23730
malus_domestica	MD13G1119500.v1.1
prunus_persica	Prupe.1G225500_v2.0.a1 Prupe.1G225500_v2.0.a1
pyrus_communis	pycom13g10410
rosa_chinensis	RchiOBHm_Chr4g0430211
rosa_laevigata	RLG00000006993
rosa_multiflora	Rmu_sc0001089.1_g000006 Rmu_sc0001089.1_g000007
rosa_roxburghii	Rroxscaffold_5G00372010
rosa_rugosa	Rorug04G0241700
rosa_samantha	Rh4AG298100 Rh4BG304600 Rh4CG320000 Rh4DG302000
rosa_wichuraiana	Rw4G025850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	691
Acc16I	TGCGCA	1 cut(s)	477
Acc36I	ACCTGC	1 cut(s)	691
AccB1I	GGYRCC	1 cut(s)	762
AciI	CCGC	3 cut(s)	42, 219, 559
AclWI	GGATC	5 cut(s)	3, 16, 634, 854, 867
AcsI	RAATTY	3 cut(s)	414, 433, 439
AcuI	CTGAAG	4 cut(s)	531, 735, 933, 1025
AfaI	GTAC	3 cut(s)	5, 68, 900
AfiI	CCNNNNNNNGG	1 cut(s)	841
AgsI	TTSAA	4 cut(s)	154, 438, 961, 986
AjnI	CCWGG	3 cut(s)	256, 274, 765
AluBI	AGCT	8 cut(s)	73, 190, 330, 545, 719, 782, 850, 953
AluI	AGCT	8 cut(s)	73, 190, 330, 545, 719, 782, 850, 953
Alw21I	GWGCWC	2 cut(s)	283, 578
AlwI	GGATC	5 cut(s)	3, 16, 634, 854, 867
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	374, 583
ApeKI	GCWGC	4 cut(s)	398, 677, 719, 819
ApoI	RAATTY	3 cut(s)	414, 433, 439
AseI	ATTAAT	1 cut(s)	1011
Asp700I	GAANNNNTTC	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	478
AspS9I	GGNCC	3 cut(s)	226, 374, 600
AsuHPI	GGTGA	2 cut(s)	758, 902
AsuII	TTCGAA	1 cut(s)	883
AvaI	CYCGRG	1 cut(s)	694
AvaII	GGWCC	2 cut(s)	226, 600
BaeGI	GKGCMC	1 cut(s)	765
BamHI	GGATCC	2 cut(s)	8, 859
BanI	GGYRCC	1 cut(s)	762
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	2 cut(s)	283, 578
BbvI	GCAGC	4 cut(s)	410, 689, 706, 806
BccI	CCATC	2 cut(s)	202, 1015
BcgI	CGANNNNNNTGC	2 cut(s)	675, 709
BciT130I	CCWGG	3 cut(s)	258, 276, 767
BclI	TGATCA	1 cut(s)	175
BfmI	CTRYAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	691
BisI	GCNGC	4 cut(s)	399, 678, 720, 820
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	4 cut(s)	400, 679, 721, 821
Bme1390I	CCNGG	3 cut(s)	258, 276, 767
Bme18I	GGWCC	2 cut(s)	226, 600
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	3 cut(s)	226, 374, 600
BmiI	GGNNCC	3 cut(s)	10, 764, 861
BmrFI	CCNGG	3 cut(s)	258, 276, 767
BmsI	GCATC	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	939
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	742
Bpu1102I	GCTNAGC	1 cut(s)	186
Bpu14I	TTCGAA	1 cut(s)	883
BsaJI	CCNNGG	2 cut(s)	256, 580
BsaWI	WCCGGW	2 cut(s)	208, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	841
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	666, 678
Bse3DI	GCAATG	2 cut(s)	693, 879
BseBI	CCWGG	3 cut(s)	258, 276, 767
BseDI	CCNNGG	2 cut(s)	256, 580
BseGI	GGATG	1 cut(s)	775
BseLI	CCNNNNNNNGG	1 cut(s)	841
BseMI	GCAATG	2 cut(s)	693, 879
BseMII	CTCAG	2 cut(s)	129, 177
BseNI	ACTGG	2 cut(s)	666, 678
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	4 cut(s)	410, 689, 706, 806
BshFI	GGCC	2 cut(s)	376, 585
BshNI	GGYRCC	1 cut(s)	762
BsiHKAI	GWGCWC	2 cut(s)	283, 578
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	125, 209, 233
BslI	CCNNNNNNNGG	1 cut(s)	841
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	2 cut(s)	376, 585
BsoBI	CYCGRG	1 cut(s)	694
Bsp119I	TTCGAA	1 cut(s)	883
Bsp1286I	GDGCHC	3 cut(s)	283, 578, 765
Bsp143I	GATC	4 cut(s)	8, 175, 639, 859
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	3 cut(s)	42, 219, 559
BspANI	GGCC	2 cut(s)	376, 585
BspCNI	CTCAG	2 cut(s)	130, 178
BspLI	GGNNCC	3 cut(s)	10, 764, 861
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	5 cut(s)	3, 16, 634, 854, 867
BspT104I	TTCGAA	1 cut(s)	883
BspT107I	GGYRCC	1 cut(s)	762
BsrDI	GCAATG	2 cut(s)	693, 879
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	666, 678
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	256, 580
BssMI	GATC	4 cut(s)	8, 175, 639, 859
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	3 cut(s)	258, 276, 767
Bst4CI	ACNGT	2 cut(s)	230, 935
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstBI	TTCGAA	1 cut(s)	883
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	138, 186, 742, 851
BstF5I	GGATG	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	478
BstKTI	GATC	4 cut(s)	11, 178, 642, 862
BstMBI	GATC	4 cut(s)	8, 175, 639, 859
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 565, 582, 683, 760, 914
BstNI	CCWGG	3 cut(s)	258, 276, 767
BstSCI	CCNGG	3 cut(s)	256, 274, 765
BstSFI	CTRYAG	1 cut(s)	288
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	4 cut(s)	410, 689, 706, 806
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	3 cut(s)	8, 639, 859
BstYI	RGATCY	3 cut(s)	8, 639, 859
BsuRI	GGCC	2 cut(s)	376, 585
BtsCI	GGATG	1 cut(s)	775
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	587
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	226, 374, 600
Csp6I	GTAC	3 cut(s)	4, 67, 899
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	4 cut(s)	173, 503, 775, 808
CviQI	GTAC	3 cut(s)	4, 67, 899
DdeI	CTNAG	4 cut(s)	138, 186, 742, 851
DpnI	GATC	4 cut(s)	10, 177, 641, 861
DpnII	GATC	4 cut(s)	8, 175, 639, 859
Eco130I	CCWWGG	1 cut(s)	580
Eco47I	GGWCC	2 cut(s)	226, 600
Eco57I	CTGAAG	4 cut(s)	531, 735, 933, 1025
Eco88I	CYCGRG	1 cut(s)	694
EcoRI	GAATTC	1 cut(s)	433
EcoRII	CCWGG	3 cut(s)	256, 274, 765
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	4 cut(s)	176, 506, 778, 811
FatI	CATG	4 cut(s)	172, 502, 774, 807
FbaI	TGATCA	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	399, 678, 720, 820
FokI	GGATG	1 cut(s)	782
Fsp4HI	GCNGC	4 cut(s)	399, 678, 720, 820
FspI	TGCGCA	1 cut(s)	477
GlaI	GCGC	1 cut(s)	477
GluI	GCNGC	4 cut(s)	399, 678, 720, 820
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	376, 585
HapII	CCGG	3 cut(s)	125, 209, 233
HhaI	GCGC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	176, 506, 778, 811
Hin6I	GCGC	1 cut(s)	476
HinP1I	GCGC	1 cut(s)	476
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	6 cut(s)	14, 167, 201, 250, 944, 1000
HpaII	CCGG	3 cut(s)	125, 209, 233
HphI	GGTGA	2 cut(s)	758, 902
Hpy166II	GTNNAC	2 cut(s)	659, 730
Hpy188I	TCNGA	6 cut(s)	13, 25, 50, 139, 445, 1005
Hpy188III	TCNNGA	4 cut(s)	164, 198, 958, 986
Hpy8I	GTNNAC	2 cut(s)	659, 730
HpyAV	CCTTC	4 cut(s)	465, 635, 845, 890
HpyCH4III	ACNGT	2 cut(s)	230, 935
HpyCH4V	TGCA	6 cut(s)	398, 425, 589, 686, 722, 822
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 565, 582, 683, 760, 914
HpyF3I	CTNAG	4 cut(s)	138, 186, 742, 851
Hsp92II	CATG	4 cut(s)	176, 506, 778, 811
HspAI	GCGC	1 cut(s)	476
Ksp22I	TGATCA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	8, 175, 639, 859
LmnI	GCTCC	4 cut(s)	34, 211, 278, 573
Lsp1109I	GCAGC	4 cut(s)	410, 689, 706, 806
LweI	GCATC	1 cut(s)	463
MalI	GATC	4 cut(s)	10, 177, 641, 861
MboI	GATC	4 cut(s)	8, 175, 639, 859
MboII	GAAGA	5 cut(s)	73, 118, 713, 939, 1018
MflI	RGATCY	3 cut(s)	8, 639, 859
MhlI	GDGCHC	3 cut(s)	283, 578, 765
MluCI	AATT	5 cut(s)	414, 433, 439, 537, 590
MlyI	GAGTC	1 cut(s)	953
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	8 cut(s)	19, 133, 351, 402, 490, 703, 850, 873
MroXI	GAANNNNTTC	1 cut(s)	927
MseI	TTAA	4 cut(s)	323, 968, 993, 1011
MslI	CAYNNNNRTG	1 cut(s)	768
MspI	CCGG	3 cut(s)	125, 209, 233
MspR9I	CCNGG	3 cut(s)	258, 276, 767
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	3 cut(s)	258, 276, 767
MwoI	GCNNNNNNNGC	6 cut(s)	121, 565, 582, 683, 760, 914
NdeII	GATC	4 cut(s)	8, 175, 639, 859
NlaIII	CATG	4 cut(s)	176, 506, 778, 811
NlaIV	GGNNCC	3 cut(s)	10, 764, 861
NmeAIII	GCCGAG	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	477
NspV	TTCGAA	1 cut(s)	883
PaeR7I	CTCGAG	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	939
PctI	GAATGC	1 cut(s)	929
PdmI	GAANNNNTTC	1 cut(s)	927
PfeI	GAWTC	5 cut(s)	14, 167, 201, 250, 1000
PfoI	TCCNGGA	1 cut(s)	274
PkrI	GCNGC	4 cut(s)	400, 679, 721, 821
PleI	GAGTC	1 cut(s)	952
PpsI	GAGTC	1 cut(s)	952
PshBI	ATTAAT	1 cut(s)	1011
Psp6I	CCWGG	3 cut(s)	256, 274, 765
PspGI	CCWGG	3 cut(s)	256, 274, 765
PspN4I	GGNNCC	3 cut(s)	10, 764, 861
PspPI	GGNCC	3 cut(s)	226, 374, 600
PspXI	VCTCGAGB	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	3 cut(s)	8, 639, 859
RsaI	GTAC	3 cut(s)	5, 68, 900
RsaNI	GTAC	3 cut(s)	4, 67, 899
RseI	CAYNNNNRTG	1 cut(s)	768
SaqAI	TTAA	4 cut(s)	323, 968, 993, 1011
SatI	GCNGC	4 cut(s)	399, 678, 720, 820
Sau3AI	GATC	4 cut(s)	8, 175, 639, 859
Sau96I	GGNCC	3 cut(s)	226, 374, 600
SchI	GAGTC	1 cut(s)	953
ScrFI	CCNGG	3 cut(s)	258, 276, 767
SduI	GDGCHC	3 cut(s)	283, 578, 765
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	288
Sfr274I	CTCGAG	1 cut(s)	694
SfuI	TTCGAA	1 cut(s)	883
SinI	GGWCC	2 cut(s)	226, 600
SlaI	CTCGAG	1 cut(s)	694
SmiMI	CAYNNNNRTG	1 cut(s)	768
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	5 cut(s)	414, 433, 439, 537, 590
SsiI	CCGC	3 cut(s)	42, 219, 559
SspI	AATATT	1 cut(s)	831
StyD4I	CCNGG	3 cut(s)	256, 274, 765
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	230, 935
TaqI	TCGA	2 cut(s)	695, 883
TasI	AATT	5 cut(s)	414, 433, 439, 537, 590
TatI	WGTACW	2 cut(s)	66, 898
TfiI	GAWTC	5 cut(s)	14, 167, 201, 250, 1000
Tru1I	TTAA	4 cut(s)	323, 968, 993, 1011
Tru9I	TTAA	4 cut(s)	323, 968, 993, 1011
TscAI	CASTG	1 cut(s)	288
TseI	GCWGC	4 cut(s)	398, 677, 719, 819
TspDTI	ATGAA	2 cut(s)	259, 519
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	226, 600
VspI	ATTAAT	1 cut(s)	1011
XapI	RAATTY	3 cut(s)	414, 433, 439
XhoI	CTCGAG	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.